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BioC experimental data: CHECK report for geneLenDataBase on zin2

This page was generated on 2016-10-08 19:29:10 -0700 (Sat, 08 Oct 2016).

Package 107/293HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
geneLenDataBase 1.8.0
Nadia Davidson , Anthony Hawkins
Snapshot Date: 2016-10-08 07:15:25 -0700 (Sat, 08 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_3/experiment/pkgs/geneLenDataBase
Last Changed Rev: 3760 / Revision: 3935
Last Changed Date: 2016-05-03 14:35:06 -0700 (Tue, 03 May 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK [ WARNINGS ]UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  WARNINGS  OK 

Summary

Package: geneLenDataBase
Version: 1.8.0
Command: /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings geneLenDataBase_1.8.0.tar.gz
StartedAt: 2016-10-08 09:32:37 -0700 (Sat, 08 Oct 2016)
EndedAt: 2016-10-08 09:37:11 -0700 (Sat, 08 Oct 2016)
EllapsedTime: 274.3 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: geneLenDataBase.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings geneLenDataBase_1.8.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.3-data-experiment/meat/geneLenDataBase.Rcheck’
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘geneLenDataBase/DESCRIPTION’ ... OK
* this is package ‘geneLenDataBase’ version ‘1.8.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geneLenDataBase’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 100.3Mb
  sub-directories of 1Mb or more:
    data  99.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
':::' call which should be '::': ‘GenomicFeatures:::supportedUCSCtables’
  See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: ‘GenomicFeatures:::.UCSC_TXNAME2GENEID_MAPDEFS’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'anoCar1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'aplCal1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'braFlo1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeJap1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.nscanPasaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGeneOld3.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'loxAfr3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'petMar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'priPac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

See section 'Cross-references' in the 'Writing R Extensions' manual.

* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.3-data-experiment/meat/geneLenDataBase.Rcheck/00check.log’
for details.


geneLenDataBase.Rcheck/00install.out:

* installing *source* package ‘geneLenDataBase’ ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (geneLenDataBase)

geneLenDataBase.Rcheck/geneLenDataBase-Ex.timings:

nameusersystemelapsed
anoCar1.ensGene.LENGTH0.0830.0000.083
anoCar1.genscan.LENGTH0.0550.0160.071
anoCar1.xenoRefGene.LENGTH1.2590.0001.258
anoGam1.ensGene.LENGTH0.0700.0200.089
anoGam1.geneid.LENGTH0.0490.0240.073
anoGam1.genscan.LENGTH0.0420.0240.066
apiMel1.genscan.LENGTH0.0580.0200.079
apiMel2.ensGene.LENGTH0.1050.0280.133
apiMel2.geneid.LENGTH0.0550.0200.075
apiMel2.genscan.LENGTH0.0420.0080.050
aplCal1.xenoRefGene.LENGTH0.5210.0000.520
bosTau2.geneSymbol.LENGTH0.0650.0080.073
bosTau2.geneid.LENGTH0.5030.0000.502
bosTau2.genscan.LENGTH0.0930.0120.105
bosTau2.refGene.LENGTH0.0620.0040.066
bosTau2.sgpGene.LENGTH0.1110.0000.111
bosTau3.ensGene.LENGTH0.1370.0200.158
bosTau3.geneSymbol.LENGTH0.0410.0120.053
bosTau3.geneid.LENGTH0.1710.0040.178
bosTau3.genscan.LENGTH0.0890.0000.089
bosTau3.refGene.LENGTH0.0510.0120.063
bosTau3.sgpGene.LENGTH0.1220.0160.138
bosTau4.ensGene.LENGTH0.2000.0240.223
bosTau4.geneSymbol.LENGTH0.0420.0160.067
bosTau4.genscan.LENGTH0.1030.0120.115
bosTau4.nscanGene.LENGTH0.0310.0160.048
bosTau4.refGene.LENGTH0.0270.0240.051
braFlo1.xenoRefGene.LENGTH0.5840.0040.589
caeJap1.xenoRefGene.LENGTH0.6940.0000.693
caePb1.xenoRefGene.LENGTH0.5720.0000.571
caePb2.xenoRefGene.LENGTH0.5430.0040.547
caeRem2.xenoRefGene.LENGTH0.4480.0000.447
caeRem3.xenoRefGene.LENGTH0.4820.0000.483
calJac1.genscan.LENGTH0.0800.0240.107
calJac1.nscanGene.LENGTH0.1010.0000.101
calJac1.xenoRefGene.LENGTH0.9370.0000.936
canFam1.ensGene.LENGTH0.4070.0040.411
canFam1.geneSymbol.LENGTH0.0080.0000.008
canFam1.genscan.LENGTH0.0600.0040.064
canFam1.nscanGene.LENGTH0.0630.0000.063
canFam1.refGene.LENGTH0.0070.0000.007
canFam1.xenoRefGene.LENGTH0.7220.0000.722
canFam2.ensGene.LENGTH0.4470.0080.458
canFam2.geneSymbol.LENGTH0.0050.0040.009
canFam2.genscan.LENGTH0.0670.0000.068
canFam2.nscanGene.LENGTH0.0710.0040.075
canFam2.refGene.LENGTH0.0090.0000.009
canFam2.xenoRefGene.LENGTH0.7590.0000.759
cavPor3.ensGene.LENGTH0.1840.0160.199
cavPor3.genscan.LENGTH0.1020.0000.103
cavPor3.nscanGene.LENGTH0.0690.0080.076
cavPor3.xenoRefGene.LENGTH1.1640.0041.168
cb1.xenoRefGene.LENGTH0.5180.0000.518
cb3.xenoRefGene.LENGTH0.3950.0080.403
ce2.geneSymbol.LENGTH0.0660.0440.110
ce2.geneid.LENGTH0.0610.0000.061
ce2.refGene.LENGTH0.0800.0280.106
ce4.geneSymbol.LENGTH0.0660.0360.103
ce4.refGene.LENGTH0.0750.0240.099
ce4.xenoRefGene.LENGTH0.1180.0000.118
ce6.ensGene.LENGTH0.1100.0040.114
ce6.geneSymbol.LENGTH0.090.020.11
ce6.refGene.LENGTH0.0860.0200.106
ce6.xenoRefGene.LENGTH0.0870.0000.087
ci1.geneSymbol.LENGTH0.0070.0000.008
ci1.refGene.LENGTH0.0070.0000.007
ci1.xenoRefGene.LENGTH0.2060.0000.205
ci2.ensGene.LENGTH0.0680.0040.072
ci2.geneSymbol.LENGTH0.0050.0000.008
ci2.refGene.LENGTH0.0080.0000.007
ci2.xenoRefGene.LENGTH0.3870.0040.398
danRer3.ensGene.LENGTH0.1450.0160.159
danRer3.geneSymbol.LENGTH0.0680.0240.094
danRer3.refGene.LENGTH0.0590.0280.087
danRer4.ensGene.LENGTH0.2040.0080.212
danRer4.geneSymbol.LENGTH0.0630.0320.095
danRer4.genscan.LENGTH0.0690.0080.076
danRer4.nscanGene.LENGTH0.1070.0200.128
danRer4.refGene.LENGTH0.0760.0200.096
danRer5.ensGene.LENGTH0.1460.0000.145
danRer5.geneSymbol.LENGTH0.0700.0080.079
danRer5.refGene.LENGTH0.3890.0160.404
danRer5.vegaGene.LENGTH0.050.020.07
danRer5.vegaPseudoGene.LENGTH0.0040.0000.004
danRer6.ensGene.LENGTH0.1560.0080.164
danRer6.geneSymbol.LENGTH0.0490.0280.078
danRer6.refGene.LENGTH0.0610.0170.077
danRer6.xenoRefGene.LENGTH0.5810.0000.580
dm1.geneSymbol.LENGTH0.0760.0230.100
dm1.genscan.LENGTH0.0270.0110.040
dm1.refGene.LENGTH0.0770.0160.092
dm2.geneSymbol.LENGTH0.0570.0400.101
dm2.geneid.LENGTH0.0590.0040.063
dm2.genscan.LENGTH0.0310.0070.051
dm2.nscanGene.LENGTH0.0530.0000.055
dm2.refGene.LENGTH0.0800.0160.096
dm3.geneSymbol.LENGTH0.0700.0000.069
dm3.nscanPasaGene.LENGTH0.1210.0240.145
dm3.refGene.LENGTH0.0710.0000.072
dp2.genscan.LENGTH0.0350.0120.175
dp2.xenoRefGene.LENGTH0.2240.0040.228
dp3.geneid.LENGTH0.0560.0120.069
dp3.genscan.LENGTH0.0230.0240.047
dp3.xenoRefGene.LENGTH0.1310.0280.159
droAna1.geneid.LENGTH0.0800.0040.083
droAna1.genscan.LENGTH0.0270.0000.027
droAna1.xenoRefGene.LENGTH0.2450.0040.249
droAna2.genscan.LENGTH0.0870.0000.087
droAna2.xenoRefGene.LENGTH0.3380.0080.346
droEre1.genscan.LENGTH0.0380.0080.046
droEre1.xenoRefGene.LENGTH0.3200.0080.329
droGri1.genscan.LENGTH0.0370.0240.060
droGri1.xenoRefGene.LENGTH0.3610.0040.366
droMoj1.geneid.LENGTH0.1360.0080.144
droMoj1.genscan.LENGTH0.0640.0000.065
droMoj1.xenoRefGene.LENGTH0.3390.0080.346
droMoj2.genscan.LENGTH0.1720.0160.189
droMoj2.xenoRefGene.LENGTH0.2910.0120.303
droPer1.genscan.LENGTH0.0440.0160.060
droPer1.xenoRefGene.LENGTH0.320.000.32
droSec1.genscan.LENGTH0.0310.0160.048
droSec1.xenoRefGene.LENGTH0.3480.0000.348
droSim1.geneid.LENGTH0.0460.0200.065
droSim1.genscan.LENGTH0.0240.0160.040
droSim1.xenoRefGene.LENGTH0.2270.0080.236
droVir1.geneid.LENGTH0.1520.0040.157
droVir1.genscan.LENGTH0.0460.0200.067
droVir1.xenoRefGene.LENGTH0.6290.0040.633
droVir2.genscan.LENGTH0.0400.0120.053
droVir2.xenoRefGene.LENGTH0.3470.0080.355
droYak1.geneid.LENGTH0.0450.0280.073
droYak1.genscan.LENGTH0.0380.0080.046
droYak1.xenoRefGene.LENGTH0.2310.0000.231
droYak2.genscan.LENGTH0.0270.0160.043
droYak2.xenoRefGene.LENGTH0.2980.0080.307
equCab1.geneSymbol.LENGTH0.0070.0000.008
equCab1.geneid.LENGTH0.0780.0200.099
equCab1.nscanGene.LENGTH0.0650.0240.089
equCab1.refGene.LENGTH0.0040.0040.007
equCab1.sgpGene.LENGTH0.0690.0080.078
equCab2.ensGene.LENGTH0.1210.0000.121
equCab2.geneSymbol.LENGTH0.0110.0000.011
equCab2.nscanGene.LENGTH0.0690.0120.081
equCab2.refGene.LENGTH0.0050.0080.011
equCab2.xenoRefGene.LENGTH0.6600.0000.662
felCat3.ensGene.LENGTH0.1710.0040.174
felCat3.geneSymbol.LENGTH0.0010.0040.006
felCat3.geneid.LENGTH1.0430.0041.048
felCat3.genscan.LENGTH0.1230.0040.127
felCat3.nscanGene.LENGTH0.0980.0120.110
felCat3.refGene.LENGTH0.0050.0000.005
felCat3.sgpGene.LENGTH0.1430.0040.147
felCat3.xenoRefGene.LENGTH1.6990.0001.700
fr1.ensGene.LENGTH0.0780.0120.089
fr1.genscan.LENGTH0.0580.0040.062
fr2.ensGene.LENGTH0.1350.0120.147
galGal2.ensGene.LENGTH0.0550.0000.055
galGal2.geneSymbol.LENGTH0.0120.0120.024
galGal2.geneid.LENGTH0.0420.0160.058
galGal2.genscan.LENGTH0.0520.0240.076
galGal2.refGene.LENGTH0.0150.0080.023
galGal2.sgpGene.LENGTH0.0470.0240.071
galGal3.ensGene.LENGTH0.0790.0040.083
galGal3.geneSymbol.LENGTH0.0150.0080.024
galGal3.genscan.LENGTH0.0620.0120.073
galGal3.nscanGene.LENGTH0.0740.0000.073
galGal3.refGene.LENGTH0.0230.0000.023
galGal3.xenoRefGene.LENGTH0.5150.0000.516
gasAcu1.ensGene.LENGTH0.1080.0080.117
gasAcu1.nscanGene.LENGTH0.0930.0280.121
hg16.acembly.LENGTH0.4360.0000.436
hg16.ensGene.LENGTH0.2530.0080.261
hg16.exoniphy.LENGTH0.5440.0000.544
hg16.geneSymbol.LENGTH0.1050.0070.114
hg16.geneid.LENGTH0.0630.0150.079
hg16.genscan.LENGTH0.0650.0080.073
hg16.knownGene.LENGTH0.1260.0200.146
hg16.refGene.LENGTH0.1010.0110.112
hg16.sgpGene.LENGTH0.0590.0040.063
hg17.acembly.LENGTH0.4750.0040.479
hg17.acescan.LENGTH0.0140.0010.014
hg17.ccdsGene.LENGTH0.0180.0160.034
hg17.ensGene.LENGTH0.1270.0240.151
hg17.exoniphy.LENGTH0.4580.0000.459
hg17.geneSymbol.LENGTH0.1010.0030.104
hg17.geneid.LENGTH0.0760.0040.081
hg17.genscan.LENGTH0.0630.0040.067
hg17.knownGene.LENGTH0.1110.0200.131
hg17.refGene.LENGTH0.0960.0000.097
hg17.sgpGene.LENGTH0.0730.0080.080
hg17.vegaGene.LENGTH0.0410.0160.057
hg17.vegaPseudoGene.LENGTH0.0170.0080.025
hg17.xenoRefGene.LENGTH0.2970.0000.297
hg18.acembly.LENGTH0.5920.0000.593
hg18.acescan.LENGTH0.0150.0000.015
hg18.ccdsGene.LENGTH0.0330.0160.049
hg18.ensGene.LENGTH0.5870.0000.587
hg18.exoniphy.LENGTH0.4020.0000.405
hg18.geneSymbol.LENGTH0.1140.0040.117
hg18.geneid.LENGTH0.0820.0040.087
hg18.genscan.LENGTH0.0560.0080.068
hg18.knownGene.LENGTH0.1530.0080.161
hg18.knownGeneOld3.LENGTH0.0750.0080.083
hg18.refGene.LENGTH0.0940.0040.098
hg18.sgpGene.LENGTH0.0850.0040.089
hg18.sibGene.LENGTH0.4420.0000.442
hg18.xenoRefGene.LENGTH0.8690.0200.889
hg19.ccdsGene.LENGTH0.0510.0120.063
hg19.ensGene.LENGTH0.3100.0040.314
hg19.exoniphy.LENGTH0.3920.0000.392
hg19.geneSymbol.LENGTH0.1080.0080.116
hg19.knownGene.LENGTH0.1690.0240.193
hg19.nscanGene.LENGTH0.2210.0000.221
hg19.refGene.LENGTH0.0990.0080.107
hg19.xenoRefGene.LENGTH0.3940.0040.398
loxAfr3.xenoRefGene.LENGTH0.9140.0000.916
mm7.ensGene.LENGTH0.1340.0000.134
mm7.geneSymbol.LENGTH0.1110.0000.111
mm7.geneid.LENGTH0.2270.0120.240
mm7.genscan.LENGTH0.0660.0040.069
mm7.knownGene.LENGTH0.0990.0000.099
mm7.refGene.LENGTH0.090.000.09
mm7.sgpGene.LENGTH0.0810.0160.098
mm7.xenoRefGene.LENGTH0.3620.0000.362
mm8.ccdsGene.LENGTH0.0170.0160.033
mm8.ensGene.LENGTH0.1450.0120.160
mm8.geneSymbol.LENGTH0.0920.0000.092
mm8.geneid.LENGTH0.0860.0240.110
mm8.genscan.LENGTH0.0670.0040.072
mm8.knownGene.LENGTH0.1100.0080.118
mm8.nscanGene.LENGTH0.0750.0000.075
mm8.refGene.LENGTH0.1050.0000.104
mm8.sgpGene.LENGTH0.1820.0080.192
mm8.sibGene.LENGTH0.6490.0000.654
mm8.xenoRefGene.LENGTH0.3380.0160.353
mm9.acembly.LENGTH0.3390.0000.339
mm9.ccdsGene.LENGTH0.0300.0120.042
mm9.ensGene.LENGTH0.2480.0200.268
mm9.exoniphy.LENGTH0.5530.0000.553
mm9.geneSymbol.LENGTH0.0910.0000.090
mm9.geneid.LENGTH0.1010.0080.109
mm9.genscan.LENGTH0.4220.0000.421
mm9.knownGene.LENGTH0.1160.0120.128
mm9.nscanGene.LENGTH0.060.000.06
mm9.refGene.LENGTH0.0980.0000.098
mm9.sgpGene.LENGTH0.0930.0080.100
mm9.xenoRefGene.LENGTH0.4640.0080.472
monDom1.genscan.LENGTH0.0770.0000.077
monDom4.ensGene.LENGTH0.0670.0160.083
monDom4.geneSymbol.LENGTH0.0040.0040.005
monDom4.genscan.LENGTH0.0490.0280.078
monDom4.nscanGene.LENGTH0.0580.0240.083
monDom4.refGene.LENGTH0.0050.0000.005
monDom4.xenoRefGene.LENGTH0.5090.0000.508
monDom5.ensGene.LENGTH0.1290.0000.129
monDom5.geneSymbol.LENGTH0.0060.0000.006
monDom5.genscan.LENGTH0.0610.0000.061
monDom5.nscanGene.LENGTH0.1130.0000.113
monDom5.refGene.LENGTH0.0050.0000.006
monDom5.xenoRefGene.LENGTH0.7810.0000.780
ornAna1.ensGene.LENGTH0.1160.0080.123
ornAna1.geneSymbol.LENGTH0.0030.0000.004
ornAna1.refGene.LENGTH0.0040.0000.003
ornAna1.xenoRefGene.LENGTH0.7580.0000.757
oryLat2.ensGene.LENGTH0.1070.0080.115
oryLat2.geneSymbol.LENGTH0.0060.0000.006
oryLat2.refGene.LENGTH0.0060.0000.005
oryLat2.xenoRefGene.LENGTH0.5540.0000.554
panTro1.ensGene.LENGTH0.1580.0080.166
panTro1.geneid.LENGTH0.0550.0200.075
panTro1.genscan.LENGTH0.0650.0000.064
panTro1.xenoRefGene.LENGTH0.1410.0120.154
panTro2.ensGene.LENGTH0.2410.0080.248
panTro2.geneSymbol.LENGTH0.1310.0000.131
panTro2.genscan.LENGTH0.0710.0000.071
panTro2.nscanGene.LENGTH0.0650.0000.065
panTro2.refGene.LENGTH0.1190.0080.127
panTro2.xenoRefGene.LENGTH0.9220.0000.922
petMar1.xenoRefGene.LENGTH0.3170.0200.336
ponAbe2.ensGene.LENGTH0.0820.0280.110
ponAbe2.geneSymbol.LENGTH0.0160.0040.020
ponAbe2.genscan.LENGTH0.0680.0000.068
ponAbe2.nscanGene.LENGTH0.0690.0000.069
ponAbe2.refGene.LENGTH0.0160.0040.019
ponAbe2.xenoRefGene.LENGTH0.6870.0040.690
priPac1.xenoRefGene.LENGTH0.380.000.38
rheMac2.ensGene.LENGTH0.2100.0040.215
rheMac2.geneSymbol.LENGTH0.0030.0040.007
rheMac2.geneid.LENGTH0.0700.0080.077
rheMac2.nscanGene.LENGTH0.0590.0000.060
rheMac2.refGene.LENGTH0.0070.0000.007
rheMac2.sgpGene.LENGTH0.0700.0080.078
rheMac2.xenoRefGene.LENGTH0.4820.0040.485
rn3.ensGene.LENGTH0.1470.0240.171
rn3.geneSymbol.LENGTH0.0560.0240.080
rn3.geneid.LENGTH0.0530.0000.052
rn3.genscan.LENGTH0.0670.0000.067
rn3.knownGene.LENGTH0.0290.0040.036
rn3.nscanGene.LENGTH0.060.000.06
rn3.refGene.LENGTH0.0720.0080.080
rn3.sgpGene.LENGTH0.0560.0040.060
rn3.xenoRefGene.LENGTH0.9050.0040.908
rn4.ensGene.LENGTH0.1300.0040.134
rn4.geneSymbol.LENGTH0.0610.0160.076
rn4.geneid.LENGTH0.1020.0040.106
rn4.genscan.LENGTH0.0690.0000.069
rn4.knownGene.LENGTH0.0220.0160.038
rn4.nscanGene.LENGTH0.0690.0200.089
rn4.refGene.LENGTH0.0650.0160.081
rn4.sgpGene.LENGTH0.0830.0120.095
rn4.xenoRefGene.LENGTH0.3060.0000.306
sacCer1.ensGene.LENGTH0.0150.0120.027
sacCer2.ensGene.LENGTH0.0150.0120.027
strPur1.geneSymbol.LENGTH0.0030.0040.006
strPur1.genscan.LENGTH0.1330.0000.132
strPur1.refGene.LENGTH0.0030.0040.007
strPur1.xenoRefGene.LENGTH0.5480.0000.548
strPur2.geneSymbol.LENGTH0.0030.0000.006
strPur2.genscan.LENGTH0.0990.0000.100
strPur2.refGene.LENGTH0.0060.0000.006
strPur2.xenoRefGene.LENGTH0.6620.0000.662
supportedGeneIDs0.0090.0000.010
supportedGenomes0.1210.0000.355
taeGut1.ensGene.LENGTH0.0630.0040.067
taeGut1.geneSymbol.LENGTH0.0000.0040.004
taeGut1.genscan.LENGTH0.0430.0080.051
taeGut1.nscanGene.LENGTH0.0270.0160.043
taeGut1.refGene.LENGTH0.0040.0000.003
taeGut1.xenoRefGene.LENGTH0.5310.0000.532
tetNig1.ensGene.LENGTH0.1060.0160.122
tetNig1.geneid.LENGTH0.0800.0080.087
tetNig1.genscan.LENGTH0.0710.0160.087
tetNig1.nscanGene.LENGTH0.1470.0080.155
tetNig2.ensGene.LENGTH0.0890.0080.097
unfactor0.0030.0040.007
xenTro1.genscan.LENGTH0.0970.0000.097
xenTro2.ensGene.LENGTH0.1190.0040.123
xenTro2.geneSymbol.LENGTH0.0390.0120.051
xenTro2.genscan.LENGTH0.2210.0200.241
xenTro2.refGene.LENGTH0.0310.0160.047