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BioC experimental data: CHECK report for gageData on moscato2

This page was generated on 2016-10-08 19:30:50 -0700 (Sat, 08 Oct 2016).

Package 103/293HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gageData 2.10.0
Weijun Luo
Snapshot Date: 2016-10-08 07:15:25 -0700 (Sat, 08 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_3/experiment/pkgs/gageData
Last Changed Rev: 3760 / Revision: 3935
Last Changed Date: 2016-05-03 14:35:06 -0700 (Tue, 03 May 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK 

Summary

Package: gageData
Version: 2.10.0
Command: rm -rf gageData.buildbin-libdir gageData.Rcheck && mkdir gageData.buildbin-libdir gageData.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=gageData.buildbin-libdir gageData_2.10.0.tar.gz >gageData.Rcheck\00install.out 2>&1 && cp gageData.Rcheck\00install.out gageData-install.out && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=gageData.buildbin-libdir --install="check:gageData-install.out" --force-multiarch --no-vignettes --timings gageData_2.10.0.tar.gz
StartedAt: 2016-10-08 12:06:40 -0700 (Sat, 08 Oct 2016)
EndedAt: 2016-10-08 12:08:41 -0700 (Sat, 08 Oct 2016)
EllapsedTime: 120.7 seconds
RetCode: 0
Status:  OK  
CheckDir: gageData.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   rm -rf gageData.buildbin-libdir gageData.Rcheck && mkdir gageData.buildbin-libdir gageData.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=gageData.buildbin-libdir gageData_2.10.0.tar.gz >gageData.Rcheck\00install.out 2>&1 && cp gageData.Rcheck\00install.out gageData-install.out  && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=gageData.buildbin-libdir --install="check:gageData-install.out" --force-multiarch --no-vignettes --timings gageData_2.10.0.tar.gz
###
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* using log directory 'E:/biocbld/bbs-3.3-data-experiment/meat/gageData.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'gageData/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'gageData' version '2.10.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'gageData' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 10.7Mb
  sub-directories of 1Mb or more:
    data  10.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
               user system elapsed
hnrnp.cnts    11.55   0.05   11.65
bmp6           3.45   0.01   34.73
gse16873.full  1.80   0.04    8.48
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
            user system elapsed
hnrnp.cnts 12.34   0.12   12.47
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'E:/biocbld/bbs-3.3-data-experiment/meat/gageData.Rcheck/00check.log'
for details.


gageData.Rcheck/00install.out:


install for i386

* installing *source* package 'gageData' ...
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'gageData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'gageData' as gageData_2.10.0.zip
* DONE (gageData)

gageData.Rcheck/examples_i386/gageData-Ex.timings:

nameusersystemelapsed
bmp6 3.45 0.0134.73
genesets3.240.023.67
gse16873.full1.800.048.48
hnrnp.cnts11.55 0.0511.65
sc.gene0.020.020.03

gageData.Rcheck/examples_x64/gageData-Ex.timings:

nameusersystemelapsed
bmp63.560.014.23
genesets3.510.023.53
gse16873.full1.570.001.57
hnrnp.cnts12.34 0.1212.47
sc.gene0.030.000.03