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BioC experimental data: CHECK report for GSBenchMark on zin2

This page was generated on 2016-10-08 19:29:47 -0700 (Sat, 08 Oct 2016).

Package 117/293HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GSBenchMark 0.106.0
Bahman Afsari
Snapshot Date: 2016-10-08 07:15:25 -0700 (Sat, 08 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_3/experiment/pkgs/GSBenchMark
Last Changed Rev: 3760 / Revision: 3935
Last Changed Date: 2016-05-03 14:35:06 -0700 (Tue, 03 May 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK [ OK ]UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 

Summary

Package: GSBenchMark
Version: 0.106.0
Command: /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings GSBenchMark_0.106.0.tar.gz
StartedAt: 2016-10-08 09:37:07 -0700 (Sat, 08 Oct 2016)
EndedAt: 2016-10-08 09:37:29 -0700 (Sat, 08 Oct 2016)
EllapsedTime: 21.5 seconds
RetCode: 0
Status:  OK 
CheckDir: GSBenchMark.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings GSBenchMark_0.106.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.3-data-experiment/meat/GSBenchMark.Rcheck’
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GSBenchMark/DESCRIPTION’ ... OK
* this is package ‘GSBenchMark’ version ‘0.106.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘GSBenchMark’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 42.0Mb
  sub-directories of 1Mb or more:
    data  41.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.3-data-experiment/meat/GSBenchMark.Rcheck/00check.log’
for details.


GSBenchMark.Rcheck/00install.out:

* installing *source* package ‘GSBenchMark’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (GSBenchMark)

GSBenchMark.Rcheck/GSBenchMark-Ex.timings:

nameusersystemelapsed
GSBenchMarkDatasets0.3340.0030.338
bipolar_GDS21900.2890.0050.293
breast_GDS8070.2890.0000.289
diracpathways0.0030.0110.015
exprsdata0.3870.0030.392
leukemia_GSEA0.2640.0040.269
logexprsdata0.4300.0030.434
marfan_GDS29600.1390.0030.143
melanoma_GDS27350.3660.0030.369
parkinsons_GDS25190.5690.0120.581
phenotypes0.4200.0000.421
prostate_GDS2545_m_nf0.2120.0000.213
prostate_GDS2545_m_p0.4360.0040.448
prostate_GDS2545_p_nf0.4040.0120.416
sarcoma_data0.7240.0040.727
squamous_GDS25200.2370.0120.249