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BioC experimental data: CHECK report for GSBenchMark on moscato2

This page was generated on 2016-10-08 19:31:40 -0700 (Sat, 08 Oct 2016).

Package 117/293HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GSBenchMark 0.106.0
Bahman Afsari
Snapshot Date: 2016-10-08 07:15:25 -0700 (Sat, 08 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_3/experiment/pkgs/GSBenchMark
Last Changed Rev: 3760 / Revision: 3935
Last Changed Date: 2016-05-03 14:35:06 -0700 (Tue, 03 May 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK 

Summary

Package: GSBenchMark
Version: 0.106.0
Command: rm -rf GSBenchMark.buildbin-libdir GSBenchMark.Rcheck && mkdir GSBenchMark.buildbin-libdir GSBenchMark.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GSBenchMark.buildbin-libdir GSBenchMark_0.106.0.tar.gz >GSBenchMark.Rcheck\00install.out 2>&1 && cp GSBenchMark.Rcheck\00install.out GSBenchMark-install.out && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=GSBenchMark.buildbin-libdir --install="check:GSBenchMark-install.out" --force-multiarch --no-vignettes --timings GSBenchMark_0.106.0.tar.gz
StartedAt: 2016-10-08 12:20:39 -0700 (Sat, 08 Oct 2016)
EndedAt: 2016-10-08 12:22:07 -0700 (Sat, 08 Oct 2016)
EllapsedTime: 88.6 seconds
RetCode: 0
Status:  OK  
CheckDir: GSBenchMark.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   rm -rf GSBenchMark.buildbin-libdir GSBenchMark.Rcheck && mkdir GSBenchMark.buildbin-libdir GSBenchMark.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GSBenchMark.buildbin-libdir GSBenchMark_0.106.0.tar.gz >GSBenchMark.Rcheck\00install.out 2>&1 && cp GSBenchMark.Rcheck\00install.out GSBenchMark-install.out  && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=GSBenchMark.buildbin-libdir --install="check:GSBenchMark-install.out" --force-multiarch --no-vignettes --timings GSBenchMark_0.106.0.tar.gz
###
##############################################################################
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* using log directory 'E:/biocbld/bbs-3.3-data-experiment/meat/GSBenchMark.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GSBenchMark/DESCRIPTION' ... OK
* this is package 'GSBenchMark' version '0.106.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'GSBenchMark' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 42.0Mb
  sub-directories of 1Mb or more:
    data  41.8Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'E:/biocbld/bbs-3.3-data-experiment/meat/GSBenchMark.Rcheck/00check.log'
for details.


GSBenchMark.Rcheck/00install.out:


install for i386

* installing *source* package 'GSBenchMark' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'GSBenchMark' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GSBenchMark' as GSBenchMark_0.106.0.zip
* DONE (GSBenchMark)

GSBenchMark.Rcheck/examples_i386/GSBenchMark-Ex.timings:

nameusersystemelapsed
GSBenchMarkDatasets0.360.030.39
bipolar_GDS21900.280.020.30
breast_GDS8070.280.030.31
diracpathways0.000.030.03
exprsdata0.440.020.45
leukemia_GSEA0.280.010.30
logexprsdata0.470.000.47
marfan_GDS29600.140.030.17
melanoma_GDS27350.420.000.42
parkinsons_GDS25190.630.020.64
phenotypes0.440.010.45
prostate_GDS2545_m_nf0.260.000.27
prostate_GDS2545_m_p0.530.000.53
prostate_GDS2545_p_nf0.460.020.47
sarcoma_data0.790.010.81
squamous_GDS25200.310.000.31

GSBenchMark.Rcheck/examples_x64/GSBenchMark-Ex.timings:

nameusersystemelapsed
GSBenchMarkDatasets0.490.000.48
bipolar_GDS21900.280.010.30
breast_GDS8070.280.000.28
diracpathways0.000.030.03
exprsdata0.390.020.41
leukemia_GSEA0.270.010.28
logexprsdata0.390.020.41
marfan_GDS29600.140.000.14
melanoma_GDS27350.340.050.39
parkinsons_GDS25190.580.030.60
phenotypes0.400.010.43
prostate_GDS2545_m_nf0.250.000.24
prostate_GDS2545_m_p0.450.020.47
prostate_GDS2545_p_nf0.390.000.39
sarcoma_data0.670.050.72
squamous_GDS25200.250.010.27