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BioC experimental data: CHECK report for ChAMPdata on zin2

This page was generated on 2016-10-08 19:29:38 -0700 (Sat, 08 Oct 2016).

Package 39/293HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ChAMPdata 1.10.0
Yuan Tian, Tiffany Morris
Snapshot Date: 2016-10-08 07:15:25 -0700 (Sat, 08 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_3/experiment/pkgs/ChAMPdata
Last Changed Rev: 3760 / Revision: 3935
Last Changed Date: 2016-05-03 14:35:06 -0700 (Tue, 03 May 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK [ OK ]UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 

Summary

Package: ChAMPdata
Version: 1.10.0
Command: /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings ChAMPdata_1.10.0.tar.gz
StartedAt: 2016-10-08 09:12:25 -0700 (Sat, 08 Oct 2016)
EndedAt: 2016-10-08 09:15:05 -0700 (Sat, 08 Oct 2016)
EllapsedTime: 160.5 seconds
RetCode: 0
Status:  OK 
CheckDir: ChAMPdata.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings ChAMPdata_1.10.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.3-data-experiment/meat/ChAMPdata.Rcheck’
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ChAMPdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ChAMPdata’ version ‘1.10.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ChAMPdata’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 394.0Mb
  sub-directories of 1Mb or more:
    data     270.3Mb
    extdata  123.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                    user system elapsed
ChAMPdata-package 32.811  0.515  33.361
testDataSet       10.414  0.040  10.460
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.3-data-experiment/meat/ChAMPdata.Rcheck/00check.log’
for details.


ChAMPdata.Rcheck/00install.out:

* installing *source* package ‘ChAMPdata’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (ChAMPdata)

ChAMPdata.Rcheck/ChAMPdata-Ex.timings:

nameusersystemelapsed
CellTypeMeans27K0.1200.0000.119
CellTypeMeans450K0.0020.0000.002
ChAMPdata-package32.811 0.51533.361
EPICSimData3.3080.0723.385
bloodCtl0.0020.0000.002
illumina450Gr1.9750.0081.983
illuminaEPICGr3.2550.0203.277
multi.hit1.2730.0081.281
probe.features0.9380.0080.947
probe.features.epic0.6630.0080.671
probeInfoALL.epic.lv0.6730.0040.678
probeInfoALL.lv0.5090.0000.509
snp.hit0.8670.0040.871
testDataSet10.414 0.04010.460