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BioC experimental data: BUILD report for CCl4 on moscato2

This page was generated on 2016-10-08 19:30:32 -0700 (Sat, 08 Oct 2016).

Package 33/293HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CCl4 1.10.0
Audrey Kauffmann
Snapshot Date: 2016-10-08 07:15:25 -0700 (Sat, 08 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_3/experiment/pkgs/CCl4
Last Changed Rev: 3760 / Revision: 3935
Last Changed Date: 2016-05-03 14:35:06 -0700 (Tue, 03 May 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  ERROR  skipped 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded [ ERROR ] skipped  skipped 

Summary

Package: CCl4
Version: 1.10.0
Command: chmod a+r CCl4 -R && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CCl4
StartedAt: 2016-10-08 08:28:36 -0700 (Sat, 08 Oct 2016)
EndedAt: 2016-10-08 08:29:48 -0700 (Sat, 08 Oct 2016)
EllapsedTime: 72.0 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   chmod a+r CCl4 -R && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CCl4
###
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* checking for file 'CCl4/DESCRIPTION' ... OK
* preparing 'CCl4':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"E:/biocbld/bbs-3.3-bioc/R/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
 ERROR
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.


Attaching package: 'limma'

The following object is masked from 'package:BiocGenerics':

    plotMA

Warning in file(file, "r") :
  cannot open file 'E:/biocbld/bbs-3.3-data-experiment/tmpdir/Rtmp4uTf0d/Rinste3c5fdb5c0b/CCl4/extdata/251316214320_auto_478-629.gpr': No such file or directory

Error: processing vignette 'CCl4.Rnw' failed with diagnostics:
 chunk 3 (label = RGList) 
Error in file(file, "r") : cannot open the connection
Execution halted