Back to Workflows build report for BioC 3.20

This page was generated on 2024-07-02 16:30 -0400 (Tue, 02 Jul 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" 4693
palomino6Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4413
lconwaymacOS 12.7.1 Montereyx86_644.4.1 RC (2024-06-06 r86719) -- "Race for Your Life" 4407
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 8/30HostnameOS / ArchINSTALLBUILD
cytofWorkflow 1.29.0  (landing page)
Mark D. Robinson
Snapshot Date: 2024-07-02 12:45 -0400 (Tue, 02 Jul 2024)
git_url: https://git.bioconductor.org/packages/cytofWorkflow
git_branch: devel
git_last_commit: c2fcb05
git_last_commit_date: 2024-04-30 10:13:00 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK  UNNEEDED, same version is already published
palomino6Windows Server 2022 Datacenter / x64  OK    OK  
lconwaymacOS 12.7.1 Monterey / x86_64  ERROR    ERROR  


INSTALL results for cytofWorkflow on lconway

To the developers/maintainers of the cytofWorkflow package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: cytofWorkflow
Version: 1.29.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL cytofWorkflow
StartedAt: 2024-07-02 13:00:21 -0400 (Tue, 02 Jul 2024)
EndedAt: 2024-07-02 13:00:23 -0400 (Tue, 02 Jul 2024)
EllapsedTime: 1.4 seconds
RetCode: 1
Status:   ERROR  

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL cytofWorkflow
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’
* installing *source* package ‘cytofWorkflow’ ...
** using staged installation
** help
No man pages found in package  ‘cytofWorkflow’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘readxl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/readxl/libs/readxl.so':
  dlopen(/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/readxl/libs/readxl.so, 0x0006): Symbol not found: (_iconv)
  Referenced from: '/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/readxl/libs/readxl.so'
  Expected in: '/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/lib/libR.dylib'
Error : package ‘readxl’ could not be loaded
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/cytofWorkflow’