Back to Workflows build report for BioC 3.20

This page was generated on 2024-07-02 16:30 -0400 (Tue, 02 Jul 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" 4693
palomino6Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4413
lconwaymacOS 12.7.1 Montereyx86_644.4.1 RC (2024-06-06 r86719) -- "Race for Your Life" 4407
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 26/30HostnameOS / ArchINSTALLBUILD
simpleSingleCell 1.29.0  (landing page)
Aaron Lun
Snapshot Date: 2024-07-02 12:45 -0400 (Tue, 02 Jul 2024)
git_url: https://git.bioconductor.org/packages/simpleSingleCell
git_branch: devel
git_last_commit: b9b62a5
git_last_commit_date: 2024-04-30 10:13:41 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK  UNNEEDED, same version is already published
palomino6Windows Server 2022 Datacenter / x64... NOT SUPPORTED ...
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  


BUILD results for simpleSingleCell on lconway

To the developers/maintainers of the simpleSingleCell package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: simpleSingleCell
Version: 1.29.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data simpleSingleCell
StartedAt: 2024-07-02 13:08:34 -0400 (Tue, 02 Jul 2024)
EndedAt: 2024-07-02 13:08:51 -0400 (Tue, 02 Jul 2024)
EllapsedTime: 17.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data simpleSingleCell
###
##############################################################################
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* checking for file ‘simpleSingleCell/DESCRIPTION’ ... OK
* preparing ‘simpleSingleCell’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘batch.Rmd’ using rmarkdown
--- finished re-building ‘batch.Rmd’

--- re-building ‘bigdata.Rmd’ using rmarkdown
--- finished re-building ‘bigdata.Rmd’

--- re-building ‘de.Rmd’ using rmarkdown
--- finished re-building ‘de.Rmd’

--- re-building ‘doublets.Rmd’ using rmarkdown
--- finished re-building ‘doublets.Rmd’

--- re-building ‘intro.Rmd’ using rmarkdown
--- finished re-building ‘intro.Rmd’

--- re-building ‘misc.Rmd’ using rmarkdown

Quitting from lines 51-78 [unnamed-chunk-1] (misc.Rmd)
Error: processing vignette 'misc.Rmd' failed with diagnostics:
package or namespace load failed for 'readxl' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/readxl/libs/readxl.so':
  dlopen(/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/readxl/libs/readxl.so, 0x0006): Symbol not found: (_iconv)
  Referenced from: '/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/readxl/libs/readxl.so'
  Expected in: '/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/lib/libR.dylib'
--- failed re-building ‘misc.Rmd’

--- re-building ‘multibatch.Rmd’ using rmarkdown
--- finished re-building ‘multibatch.Rmd’

--- re-building ‘qc.Rmd’ using rmarkdown
--- finished re-building ‘qc.Rmd’

--- re-building ‘reads.Rmd’ using rmarkdown
--- finished re-building ‘reads.Rmd’

--- re-building ‘spike.Rmd’ using rmarkdown
--- finished re-building ‘spike.Rmd’

--- re-building ‘tenx.Rmd’ using rmarkdown
--- finished re-building ‘tenx.Rmd’

--- re-building ‘umis.Rmd’ using rmarkdown
--- finished re-building ‘umis.Rmd’

--- re-building ‘var.Rmd’ using rmarkdown
--- finished re-building ‘var.Rmd’

SUMMARY: processing the following file failed:
  ‘misc.Rmd’

Error: Vignette re-building failed.
Execution halted