############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.11.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbChebi.Rcheck' * using R version 4.4.0 RC (2024-04-16 r86468 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * using options '--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error' * checking for file 'biodbChebi/DESCRIPTION' ... OK * this is package 'biodbChebi' version '1.11.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'biodbChebi' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... SKIPPED * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... SKIPPED * checking examples ... SKIPPED * checking for unstated dependencies in 'longtests' ... OK * checking tests in 'longtests' ... Running 'testthat.R' ERROR Running the tests in 'longtests/testthat.R' failed. Last 13 lines of output: 12. └─self$getEntryContentFromDb(ch.missing.ids) 13. └─private$doGetEntryContentFromDb(entry.id) 14. └─private$doGetEntryContentOneByOne(id) 15. └─scheduler$sendRequest(requests[[i]]) 16. └─cch$saveContentToFile(...) 17. └─private$doSaveContentToFile(...) 18. └─biodb:::saveContentsToFiles(file.paths, content) 19. └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files) 20. └─biodb (local) ``(dots[[1L]][[1L]], dots[[2L]][[1L]]) 21. └─base::cat(cnt, file = f) 22. └─base::file(file, ifelse(append, "a", "w")) [ FAIL 1 | WARN 1 | SKIP 0 | PASS 1100 ] Error: Test failures Execution halted * DONE Status: 1 ERROR See 'F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbChebi.Rcheck/00check.log' for details.