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BioC experimental data: CHECK report for facopy.annot on zin1

This page was generated on 2016-04-23 10:55:02 -0700 (Sat, 23 Apr 2016).

Package 80/257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
facopy.annot 0.104.0
David Mosen-Ansorena
Snapshot Date: 2016-04-20 09:20:20 -0700 (Wed, 20 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_2/experiment/pkgs/facopy.annot
Last Changed Rev: 3460 / Revision: 3730
Last Changed Date: 2015-10-13 13:14:23 -0700 (Tue, 13 Oct 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: facopy.annot
Version: 0.104.0
Command: /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings facopy.annot_0.104.0.tar.gz
StartedAt: 2016-04-20 11:22:56 -0700 (Wed, 20 Apr 2016)
EndedAt: 2016-04-20 11:23:20 -0700 (Wed, 20 Apr 2016)
EllapsedTime: 24.5 seconds
RetCode: 0
Status:  OK 
CheckDir: facopy.annot.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings facopy.annot_0.104.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.2-data-experiment/meat/facopy.annot.Rcheck’
* using R version 3.2.4 Revised (2016-03-16 r70336)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘facopy.annot/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘facopy.annot’ version ‘0.104.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘facopy.annot’ can be installed ... [2s/2s] OK
* checking installed package size ... NOTE
  installed size is  6.2Mb
  sub-directories of 1Mb or more:
    data   5.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [3s/3s] OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.2-data-experiment/meat/facopy.annot.Rcheck/00check.log’
for details.


facopy.annot.Rcheck/00install.out:

* installing *source* package ‘facopy.annot’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (facopy.annot)

facopy.annot.Rcheck/facopy.annot-Ex.timings:

nameusersystemelapsed
hg18_armLimits0.0210.0000.020
hg18_db_gsk_bladder0.0150.0000.014
hg18_db_gsk_blood0.020.000.02
hg18_db_gsk_bone0.0120.0000.012
hg18_db_gsk_brain0.0160.0000.016
hg18_db_gsk_breast0.0190.0000.019
hg18_db_gsk_cervix0.0140.0000.015
hg18_db_gsk_cns0.0190.0000.018
hg18_db_gsk_colon0.0130.0030.018
hg18_db_gsk_connective_tissue0.0130.0000.013
hg18_db_gsk_esophagus0.0140.0000.014
hg18_db_gsk_eye0.0040.0000.003
hg18_db_gsk_kidney0.0140.0000.014
hg18_db_gsk_liver0.0180.0000.018
hg18_db_gsk_lung0.0210.0000.021
hg18_db_gsk_muscle0.0120.0000.012
hg18_db_gsk_ovary0.0160.0000.015
hg18_db_gsk_pancreas0.0140.0000.013
hg18_db_gsk_pharynx0.0110.0000.011
hg18_db_gsk_placenta0.0130.0000.014
hg18_db_gsk_prostate0.0150.0000.015
hg18_db_gsk_rectum0.0110.0000.011
hg18_db_gsk_sarcoma0.0090.0000.009
hg18_db_gsk_stomach0.0130.0000.013
hg18_db_gsk_synovium0.0030.0000.003
hg18_db_gsk_thyroid0.0100.0030.014
hg18_db_gsk_uterus0.0150.0000.015
hg18_db_nci600.0230.0000.023
hg18_db_tcga_blca0.0210.0000.021
hg18_db_tcga_brca0.0220.0000.022
hg18_db_tcga_cesc0.020.000.02
hg18_db_tcga_coad0.020.000.02
hg18_db_tcga_gbm0.0370.0000.037
hg18_db_tcga_hnsc0.020.000.02
hg18_db_tcga_kirc0.0200.0000.021
hg18_db_tcga_kirp0.0190.0000.019
hg18_db_tcga_lgg0.0190.0000.019
hg18_db_tcga_lihc0.020.000.02
hg18_db_tcga_luad0.0210.0000.020
hg18_db_tcga_lusc0.0190.0000.019
hg18_db_tcga_ov0.020.000.02
hg18_db_tcga_prad0.0170.0000.017
hg18_db_tcga_read0.0170.0040.021
hg18_db_tcga_stad0.0200.0000.021
hg18_db_tcga_thca0.0160.0000.016
hg18_db_tcga_ucec0.020.000.02
hg18_feature_cancergene0.0010.0030.005
hg18_feature_ensembl0.1440.0000.144
hg18_feature_lincRNA0.0200.0000.019
hg18_feature_mirnas0.0060.0000.005
hg18_feature_oncogene0.0050.0000.005
hg18_feature_tumorsupressor0.0010.0030.004
hg19_armLimits0.0020.0010.003
hg19_db_gsk_bladder0.0160.0000.016
hg19_db_gsk_blood0.0240.0000.024
hg19_db_gsk_bone0.0120.0000.012
hg19_db_gsk_brain0.0150.0000.016
hg19_db_gsk_breast0.0170.0000.020
hg19_db_gsk_cervix0.0170.0010.017
hg19_db_gsk_cns0.0170.0000.017
hg19_db_gsk_colon0.0170.0000.018
hg19_db_gsk_connective_tissue0.0140.0000.013
hg19_db_gsk_esophagus0.0150.0000.016
hg19_db_gsk_eye0.0040.0000.004
hg19_db_gsk_kidney0.0140.0000.014
hg19_db_gsk_liver0.0170.0000.018
hg19_db_gsk_lung0.0250.0000.024
hg19_db_gsk_muscle0.0120.0000.013
hg19_db_gsk_ovary0.0150.0000.014
hg19_db_gsk_pancreas0.0140.0000.015
hg19_db_gsk_pharynx0.0120.0000.011
hg19_db_gsk_placenta0.0150.0000.015
hg19_db_gsk_prostate0.0160.0000.016
hg19_db_gsk_rectum0.0120.0000.011
hg19_db_gsk_sarcoma0.0080.0000.009
hg19_db_gsk_stomach0.0140.0000.013
hg19_db_gsk_synovium0.0050.0000.006
hg19_db_gsk_thyroid0.0100.0030.014
hg19_db_gsk_uterus0.0140.0010.014
hg19_db_nci600.0220.0000.022
hg19_db_tcga_blca0.0240.0000.025
hg19_db_tcga_brca0.0230.0000.022
hg19_db_tcga_cesc0.0240.0000.032
hg19_db_tcga_coad0.0230.0000.027
hg19_db_tcga_gbm0.0250.0000.024
hg19_db_tcga_hnsc0.0230.0000.023
hg19_db_tcga_kirc0.0200.0030.024
hg19_db_tcga_kirp0.0240.0000.024
hg19_db_tcga_lgg0.0210.0000.020
hg19_db_tcga_lihc0.0240.0000.025
hg19_db_tcga_luad0.0270.0000.028
hg19_db_tcga_lusc0.0220.0000.022
hg19_db_tcga_ov0.0200.0000.024
hg19_db_tcga_prad0.0220.0000.029
hg19_db_tcga_read0.0220.0000.027
hg19_db_tcga_stad0.0250.0000.025
hg19_db_tcga_thca0.0180.0000.018
hg19_db_tcga_ucec0.0220.0000.022
hg19_feature_cancergene0.0060.0000.006
hg19_feature_ensembl0.3710.0000.378
hg19_feature_lincRNA0.0210.0000.021
hg19_feature_mirnas0.010.000.01
hg19_feature_oncogene0.0050.0000.004
hg19_feature_tumorsupressor0.0040.0000.004
mm8_armLimits0.0030.0000.003
mm8_feature_ensembl0.3060.0080.313
mm8_feature_mirnas0.0080.0000.008