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BioC experimental data: CHECK report for KEGGandMetacoreDzPathwaysGEO on zin1

This page was generated on 2016-04-23 10:55:00 -0700 (Sat, 23 Apr 2016).

Package 138/257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
KEGGandMetacoreDzPathwaysGEO 0.104.0
Gaurav Bhatti
Snapshot Date: 2016-04-20 09:20:20 -0700 (Wed, 20 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_2/experiment/pkgs/KEGGandMetacoreDzPathwaysGEO
Last Changed Rev: 3460 / Revision: 3730
Last Changed Date: 2015-10-13 13:14:23 -0700 (Tue, 13 Oct 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: KEGGandMetacoreDzPathwaysGEO
Version: 0.104.0
Command: /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings KEGGandMetacoreDzPathwaysGEO_0.104.0.tar.gz
StartedAt: 2016-04-20 11:37:35 -0700 (Wed, 20 Apr 2016)
EndedAt: 2016-04-20 11:38:18 -0700 (Wed, 20 Apr 2016)
EllapsedTime: 43.0 seconds
RetCode: 0
Status:  OK 
CheckDir: KEGGandMetacoreDzPathwaysGEO.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings KEGGandMetacoreDzPathwaysGEO_0.104.0.tar.gz
###
##############################################################################
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* using log directory ‘/home/biocbuild/bbs-3.2-data-experiment/meat/KEGGandMetacoreDzPathwaysGEO.Rcheck’
* using R version 3.2.4 Revised (2016-03-16 r70336)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘KEGGandMetacoreDzPathwaysGEO/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘KEGGandMetacoreDzPathwaysGEO’ version ‘0.104.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘KEGGandMetacoreDzPathwaysGEO’ can be installed ... [1s/2s] OK
* checking installed package size ... NOTE
  installed size is 98.8Mb
  sub-directories of 1Mb or more:
    data  98.5Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [13s/13s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.2-data-experiment/meat/KEGGandMetacoreDzPathwaysGEO.Rcheck/00check.log’
for details.


KEGGandMetacoreDzPathwaysGEO.Rcheck/00install.out:

* installing *source* package ‘KEGGandMetacoreDzPathwaysGEO’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (KEGGandMetacoreDzPathwaysGEO)

KEGGandMetacoreDzPathwaysGEO.Rcheck/KEGGandMetacoreDzPathwaysGEO-Ex.timings:

nameusersystemelapsed
GSE11450.3720.0040.376
GSE119063.2520.0163.273
GSE14924_CD40.3130.0080.513
GSE14924_CD80.3110.0040.315
GSE167590.3790.0080.388
GSE194200.2890.0000.289
GSE201640.0910.0030.096
GSE227800.240.000.24
GSE238780.8560.0070.865
GSE24739_G00.4580.0010.458
GSE24739_G10.4610.0000.461
GSE301530.6300.0030.634
GSE326760.7520.0120.765
GSE38666_epithelia0.3630.0040.371
GSE38666_stroma0.2280.0000.229
GSE41830.3040.0120.315
GSE420571.0920.0081.101
GSE73050.7840.0080.793
KEGGandMetacoreDzPathwaysGEO-package0.6720.0000.671