clusterProfiler 2.4.3
Guangchuang Yu
| Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/clusterProfiler | | Last Changed Rev: 112674 / Revision: 116712 | | Last Changed Date: 2016-01-18 18:09:31 -0800 (Mon, 18 Jan 2016) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | OK | |  |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | OK | OK | [ ERROR ] | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### rm -rf clusterProfiler.buildbin-libdir clusterProfiler.Rcheck && mkdir clusterProfiler.buildbin-libdir clusterProfiler.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=clusterProfiler.buildbin-libdir clusterProfiler_2.4.3.tar.gz >clusterProfiler.Rcheck\00install.out 2>&1 && cp clusterProfiler.Rcheck\00install.out clusterProfiler-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=clusterProfiler.buildbin-libdir --install="check:clusterProfiler-install.out" --force-multiarch --no-vignettes --timings clusterProfiler_2.4.3.tar.gz
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* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/clusterProfiler.Rcheck'
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'clusterProfiler/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'clusterProfiler' version '2.4.3'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.svnignore
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'clusterProfiler' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... ERROR
Running examples in 'clusterProfiler-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: compareCluster
> ### Title: Compare gene clusters functional profile
> ### Aliases: compareCluster
> ### Keywords: manip
>
> ### ** Examples
>
> data(gcSample)
> xx <- compareCluster(gcSample, fun="enrichKEGG",
+ organism="human", pvalueCutoff=0.05)
Error in curl::curl_fetch_memory(url, handle = handle) :
Failure when receiving data from the peer
Calls: compareCluster ... request_fetch -> request_fetch.write_memory -> <Anonymous> -> .Call
Execution halted
** running examples for arch 'x64' ... ERROR
Running examples in 'clusterProfiler-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: compareCluster
> ### Title: Compare gene clusters functional profile
> ### Aliases: compareCluster
> ### Keywords: manip
>
> ### ** Examples
>
> data(gcSample)
> xx <- compareCluster(gcSample, fun="enrichKEGG",
+ organism="human", pvalueCutoff=0.05)
Error in curl::curl_fetch_memory(url, handle = handle) :
Failure when receiving data from the peer
Calls: compareCluster ... request_fetch -> request_fetch.write_memory -> <Anonymous> -> .Call
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 ERRORs, 1 NOTE
See
'D:/biocbld/bbs-3.2-bioc/meat/clusterProfiler.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'clusterProfiler' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'clusterProfiler' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'clusterProfiler' as clusterProfiler_2.4.3.zip
* DONE (clusterProfiler)