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This page was generated on 2016-04-23 10:19:54 -0700 (Sat, 23 Apr 2016).
| Package 145/1103 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||
| ccrepe 1.6.0 Emma Schwager
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | ERROR | ||||||
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | NotNeeded | OK | [ ERROR ] | OK | ||||||
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | ERROR | OK |
| Package: ccrepe |
| Version: 1.6.0 |
| Command: rm -rf ccrepe.buildbin-libdir ccrepe.Rcheck && mkdir ccrepe.buildbin-libdir ccrepe.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ccrepe.buildbin-libdir ccrepe_1.6.0.tar.gz >ccrepe.Rcheck\00install.out 2>&1 && cp ccrepe.Rcheck\00install.out ccrepe-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=ccrepe.buildbin-libdir --install="check:ccrepe-install.out" --force-multiarch --no-vignettes --timings ccrepe_1.6.0.tar.gz |
| StartedAt: 2016-04-23 00:23:09 -0700 (Sat, 23 Apr 2016) |
| EndedAt: 2016-04-23 00:23:56 -0700 (Sat, 23 Apr 2016) |
| EllapsedTime: 46.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: ccrepe.Rcheck |
| Warnings: NA |
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### Running command:
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### rm -rf ccrepe.buildbin-libdir ccrepe.Rcheck && mkdir ccrepe.buildbin-libdir ccrepe.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ccrepe.buildbin-libdir ccrepe_1.6.0.tar.gz >ccrepe.Rcheck\00install.out 2>&1 && cp ccrepe.Rcheck\00install.out ccrepe-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=ccrepe.buildbin-libdir --install="check:ccrepe-install.out" --force-multiarch --no-vignettes --timings ccrepe_1.6.0.tar.gz
###
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* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/ccrepe.Rcheck'
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ccrepe/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ccrepe' version '1.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ccrepe' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
qc_filter: no visible binding for global variable 'x'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [0s] OK
** running examples for arch 'x64' ... [1s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'runTests.R' [3s]
Warning message:
running command '"D:/biocbld/BBS-3˜1.2-B/R/bin/i386/R" CMD BATCH --vanilla "runTests.R" "runTests.Rout"' had status 1
ERROR
Running the tests in 'tests/runTests.R' failed.
Last 13 lines of output:
ccrepe RUnit Tests - 2 test functions, 1 error, 0 failures
ERROR in D:/biocbld/bbs-3.2-bioc/meat/ccrepe.buildbin-libdir/ccrepe/unitTests/test_ccrepe.R: Error while sourcing D:/biocbld/bbs-3.2-bioc/meat/ccrepe.buildbin-libdir/ccrepe/unitTests/test_ccrepe.R : Error in match.arg(type, c("success", "failure", "error", "skip", "warning")) :
'arg' must be NULL or a character vector
Test files with failing tests
test_ccrepe.R
D:/biocbld/bbs-3.2-bioc/meat/ccrepe.buildbin-libdir/ccrepe/unitTests/test_ccrepe.R
Error in BiocGenerics:::testPackage("ccrepe") :
unit tests failed for package ccrepe
Execution halted
** running tests for arch 'x64' ...
Running 'runTests.R' [2s]
Warning message:
running command '"D:/biocbld/BBS-3˜1.2-B/R/bin/x64/R" CMD BATCH --vanilla "runTests.R" "runTests.Rout"' had status 1
ERROR
Running the tests in 'tests/runTests.R' failed.
Last 13 lines of output:
ccrepe RUnit Tests - 2 test functions, 1 error, 0 failures
ERROR in D:/biocbld/bbs-3.2-bioc/meat/ccrepe.buildbin-libdir/ccrepe/unitTests/test_ccrepe.R: Error while sourcing D:/biocbld/bbs-3.2-bioc/meat/ccrepe.buildbin-libdir/ccrepe/unitTests/test_ccrepe.R : Error in match.arg(type, c("success", "failure", "error", "skip", "warning")) :
'arg' must be NULL or a character vector
Test files with failing tests
test_ccrepe.R
D:/biocbld/bbs-3.2-bioc/meat/ccrepe.buildbin-libdir/ccrepe/unitTests/test_ccrepe.R
Error in BiocGenerics:::testPackage("ccrepe") :
unit tests failed for package ccrepe
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 ERRORs, 1 NOTE
See
'D:/biocbld/bbs-3.2-bioc/meat/ccrepe.Rcheck/00check.log'
for details.
runTests.Rout.fail:
R version 3.2.4 (2016-03-10) -- "Very Secure Dishes"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("ccrepe")
Error in match.arg(type, c("success", "failure", "error", "skip", "warning")) :
'arg' must be NULL or a character vector
In addition: Warning message:
package 'testthat' was built under R version 3.2.5
RUNIT TEST PROTOCOL -- Sat Apr 23 00:23:46 2016
***********************************************
Number of test functions: 2
Number of errors: 1
Number of failures: 0
1 Test Suite :
ccrepe RUnit Tests - 2 test functions, 1 error, 0 failures
ERROR in D:/biocbld/bbs-3.2-bioc/meat/ccrepe.buildbin-libdir/ccrepe/unitTests/test_ccrepe.R: Error while sourcing D:/biocbld/bbs-3.2-bioc/meat/ccrepe.buildbin-libdir/ccrepe/unitTests/test_ccrepe.R : Error in match.arg(type, c("success", "failure", "error", "skip", "warning")) :
'arg' must be NULL or a character vector
Test files with failing tests
test_ccrepe.R
D:/biocbld/bbs-3.2-bioc/meat/ccrepe.buildbin-libdir/ccrepe/unitTests/test_ccrepe.R
Error in BiocGenerics:::testPackage("ccrepe") :
unit tests failed for package ccrepe
Execution halted
runTests.Rout.fail:
R version 3.2.4 (2016-03-10) -- "Very Secure Dishes"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("ccrepe")
Error in match.arg(type, c("success", "failure", "error", "skip", "warning")) :
'arg' must be NULL or a character vector
In addition: Warning message:
package 'testthat' was built under R version 3.2.5
RUNIT TEST PROTOCOL -- Sat Apr 23 00:23:49 2016
***********************************************
Number of test functions: 2
Number of errors: 1
Number of failures: 0
1 Test Suite :
ccrepe RUnit Tests - 2 test functions, 1 error, 0 failures
ERROR in D:/biocbld/bbs-3.2-bioc/meat/ccrepe.buildbin-libdir/ccrepe/unitTests/test_ccrepe.R: Error while sourcing D:/biocbld/bbs-3.2-bioc/meat/ccrepe.buildbin-libdir/ccrepe/unitTests/test_ccrepe.R : Error in match.arg(type, c("success", "failure", "error", "skip", "warning")) :
'arg' must be NULL or a character vector
Test files with failing tests
test_ccrepe.R
D:/biocbld/bbs-3.2-bioc/meat/ccrepe.buildbin-libdir/ccrepe/unitTests/test_ccrepe.R
Error in BiocGenerics:::testPackage("ccrepe") :
unit tests failed for package ccrepe
Execution halted
ccrepe.Rcheck/00install.out:
install for i386 * installing *source* package 'ccrepe' ... ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded install for x64 * installing *source* package 'ccrepe' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'ccrepe' as ccrepe_1.6.0.zip * DONE (ccrepe)
ccrepe.Rcheck/examples_i386/ccrepe-Ex.timings:
| name | user | system | elapsed | |
| ccrepe | 0.06 | 0.00 | 0.06 | |
| nc.score | 0 | 0 | 0 | |
ccrepe.Rcheck/examples_x64/ccrepe-Ex.timings:
| name | user | system | elapsed | |
| ccrepe | 0.08 | 0.00 | 0.08 | |
| nc.score | 0 | 0 | 0 | |