| Back to the "Multiple platform build/check report" | A B [C] D E F G H I J K L M N O P Q R S T U V W X Y Z |
This page was generated on 2016-04-23 10:21:44 -0700 (Sat, 23 Apr 2016).
| Package 217/1103 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||
| ComplexHeatmap 1.6.0 Zuguang Gu
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | WARNINGS |  | |||||
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | OK | OK | [ WARNINGS ] | OK | | |||||
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | WARNINGS | OK | |
| Package: ComplexHeatmap |
| Version: 1.6.0 |
| Command: rm -rf ComplexHeatmap.buildbin-libdir ComplexHeatmap.Rcheck && mkdir ComplexHeatmap.buildbin-libdir ComplexHeatmap.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ComplexHeatmap.buildbin-libdir ComplexHeatmap_1.6.0.tar.gz >ComplexHeatmap.Rcheck\00install.out 2>&1 && cp ComplexHeatmap.Rcheck\00install.out ComplexHeatmap-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=ComplexHeatmap.buildbin-libdir --install="check:ComplexHeatmap-install.out" --force-multiarch --no-vignettes --timings ComplexHeatmap_1.6.0.tar.gz |
| StartedAt: 2016-04-23 01:05:01 -0700 (Sat, 23 Apr 2016) |
| EndedAt: 2016-04-23 01:08:18 -0700 (Sat, 23 Apr 2016) |
| EllapsedTime: 197.4 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: ComplexHeatmap.Rcheck |
| Warnings: 1 |
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###
### Running command:
###
### rm -rf ComplexHeatmap.buildbin-libdir ComplexHeatmap.Rcheck && mkdir ComplexHeatmap.buildbin-libdir ComplexHeatmap.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ComplexHeatmap.buildbin-libdir ComplexHeatmap_1.6.0.tar.gz >ComplexHeatmap.Rcheck\00install.out 2>&1 && cp ComplexHeatmap.Rcheck\00install.out ComplexHeatmap-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=ComplexHeatmap.buildbin-libdir --install="check:ComplexHeatmap-install.out" --force-multiarch --no-vignettes --timings ComplexHeatmap_1.6.0.tar.gz
###
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* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/ComplexHeatmap.Rcheck'
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ComplexHeatmap/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ComplexHeatmap' version '1.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ComplexHeatmap' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Codoc mismatches from documentation object 'ht_global_opt':
ht_global_opt
Code: function(..., RESET = FALSE, READ.ONLY = NULL, LOCAL = FALSE)
Docs: function(..., RESET = FALSE, READ.ONLY = NULL)
Argument names in code not in docs:
LOCAL
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [44s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
Heatmap 12.98 0 13.46
add.AdditiveUnit 5.85 0 5.85
** running examples for arch 'x64' ... [52s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
Heatmap 15.57 0.03 15.66
densityHeatmap 5.56 0.02 5.68
add.AdditiveUnit 5.26 0.01 5.27
HeatmapList-class 5.03 0.00 5.02
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'test-all.R' [2s]
[2s] OK
** running tests for arch 'x64' ...
Running 'test-all.R' [1s]
[2s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING
See
'D:/biocbld/bbs-3.2-bioc/meat/ComplexHeatmap.Rcheck/00check.log'
for details.
ComplexHeatmap.Rcheck/00install.out:
install for i386 * installing *source* package 'ComplexHeatmap' ... ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded install for x64 * installing *source* package 'ComplexHeatmap' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'ComplexHeatmap' as ComplexHeatmap_1.6.0.zip * DONE (ComplexHeatmap)
ComplexHeatmap.Rcheck/examples_i386/ComplexHeatmap-Ex.timings:
| name | user | system | elapsed | |
| AdditiveUnit-class | 0 | 0 | 0 | |
| AdditiveUnit | 0 | 0 | 0 | |
| ColorMapping-class | 0 | 0 | 0 | |
| ColorMapping | 0.05 | 0.00 | 0.05 | |
| ComplexHeatmap-package | 0 | 0 | 0 | |
| Heatmap-class | 0.02 | 0.00 | 0.02 | |
| Heatmap | 12.98 | 0.00 | 13.46 | |
| HeatmapAnnotation-class | 0 | 0 | 0 | |
| HeatmapAnnotation | 0.06 | 0.00 | 0.06 | |
| HeatmapList-class | 4.34 | 0.00 | 4.67 | |
| HeatmapList | 0 | 0 | 0 | |
| SingleAnnotation-class | 0 | 0 | 0 | |
| SingleAnnotation | 0.10 | 0.02 | 0.12 | |
| add.AdditiveUnit | 5.85 | 0.00 | 5.85 | |
| add_heatmap-Heatmap-method | 1.03 | 0.00 | 1.03 | |
| add_heatmap-HeatmapAnnotation-method | 0.37 | 0.00 | 0.37 | |
| add_heatmap-HeatmapList-method | 2.06 | 0.00 | 2.06 | |
| add_heatmap-dispatch | 0 | 0 | 0 | |
| anno_barplot | 0.02 | 0.00 | 0.02 | |
| anno_boxplot | 0.03 | 0.00 | 0.03 | |
| anno_density | 0.23 | 0.00 | 0.24 | |
| anno_histogram | 0.05 | 0.00 | 0.04 | |
| anno_points | 0 | 0 | 0 | |
| anno_text | 0.31 | 0.00 | 0.31 | |
| annotation_legend_size-HeatmapList-method | 0.02 | 0.00 | 0.02 | |
| color_mapping_legend-ColorMapping-method | 0.2 | 0.0 | 0.2 | |
| columnAnnotation | 0.02 | 0.00 | 0.01 | |
| column_anno_barplot | 0 | 0 | 0 | |
| column_anno_boxplot | 0 | 0 | 0 | |
| column_anno_density | 0 | 0 | 0 | |
| column_anno_histogram | 0 | 0 | 0 | |
| column_anno_points | 0 | 0 | 0 | |
| column_anno_text | 0 | 0 | 0 | |
| column_dend-Heatmap-method | 0 | 0 | 0 | |
| column_dend-HeatmapList-method | 0 | 0 | 0 | |
| column_dend-dispatch | 0 | 0 | 0 | |
| column_order-Heatmap-method | 0 | 0 | 0 | |
| column_order-HeatmapList-method | 0 | 0 | 0 | |
| column_order-dispatch | 0 | 0 | 0 | |
| component_height-Heatmap-method | 0 | 0 | 0 | |
| component_height-HeatmapList-method | 0 | 0 | 0 | |
| component_height-dispatch | 0 | 0 | 0 | |
| component_width-Heatmap-method | 0 | 0 | 0 | |
| component_width-HeatmapList-method | 0 | 0 | 0 | |
| component_width-dispatch | 0 | 0 | 0 | |
| decorate_annotation | 0.64 | 0.00 | 0.64 | |
| decorate_column_dend | 0 | 0 | 0 | |
| decorate_column_names | 0 | 0 | 0 | |
| decorate_column_title | 0 | 0 | 0 | |
| decorate_dend | 0.33 | 0.00 | 0.32 | |
| decorate_dimnames | 0.37 | 0.00 | 0.38 | |
| decorate_heatmap_body | 0.30 | 0.00 | 0.29 | |
| decorate_row_dend | 0 | 0 | 0 | |
| decorate_row_names | 0 | 0 | 0 | |
| decorate_row_title | 0 | 0 | 0 | |
| decorate_title | 0.44 | 0.00 | 0.44 | |
| densityHeatmap | 4.04 | 0.00 | 4.22 | |
| dist2 | 0.02 | 0.00 | 0.02 | |
| draw-Heatmap-method | 0.37 | 0.00 | 0.48 | |
| draw-HeatmapAnnotation-method | 0.17 | 0.00 | 0.17 | |
| draw-HeatmapList-method | 1.87 | 0.00 | 1.88 | |
| draw-SingleAnnotation-method | 0.19 | 0.00 | 0.18 | |
| draw-dispatch | 0 | 0 | 0 | |
| draw_annotation-Heatmap-method | 0 | 0 | 0 | |
| draw_annotation_legend-HeatmapList-method | 0 | 0 | 0 | |
| draw_dend-Heatmap-method | 0 | 0 | 0 | |
| draw_dimnames-Heatmap-method | 0 | 0 | 0 | |
| draw_heatmap_body-Heatmap-method | 0 | 0 | 0 | |
| draw_heatmap_legend-HeatmapList-method | 0 | 0 | 0 | |
| draw_heatmap_list-HeatmapList-method | 0 | 0 | 0 | |
| draw_title-Heatmap-method | 0 | 0 | 0 | |
| draw_title-HeatmapList-method | 0 | 0 | 0 | |
| draw_title-dispatch | 0 | 0 | 0 | |
| enhanced_basicplot | 1.54 | 0.02 | 1.56 | |
| get_color_mapping_list-HeatmapAnnotation-method | 0 | 0 | 0 | |
| get_color_mapping_param_list-HeatmapAnnotation-method | 0 | 0 | 0 | |
| grid.dendrogram | 0.02 | 0.00 | 0.02 | |
| heatmap_legend_size-HeatmapList-method | 0 | 0 | 0 | |
| ht_global_opt | 0 | 0 | 0 | |
| is_abs_unit | 0 | 0 | 0 | |
| make_column_cluster-Heatmap-method | 0 | 0 | 0 | |
| make_layout-Heatmap-method | 0 | 0 | 0 | |
| make_layout-HeatmapList-method | 0 | 0 | 0 | |
| make_layout-dispatch | 0 | 0 | 0 | |
| make_row_cluster-Heatmap-method | 0 | 0 | 0 | |
| map_to_colors-ColorMapping-method | 0.03 | 0.00 | 0.03 | |
| max_text_height | 0.02 | 0.00 | 0.01 | |
| max_text_width | 0 | 0 | 0 | |
| oncoPrint | 0 | 0 | 0 | |
| plotDataFrame | 3.26 | 0.00 | 3.26 | |
| prepare-Heatmap-method | 0 | 0 | 0 | |
| rowAnnotation | 0.02 | 0.00 | 0.01 | |
| row_anno_barplot | 0 | 0 | 0 | |
| row_anno_boxplot | 0.02 | 0.00 | 0.02 | |
| row_anno_density | 0 | 0 | 0 | |
| row_anno_histogram | 0 | 0 | 0 | |
| row_anno_points | 0 | 0 | 0 | |
| row_anno_text | 0 | 0 | 0 | |
| row_dend-Heatmap-method | 0 | 0 | 0 | |
| row_dend-HeatmapList-method | 0 | 0 | 0 | |
| row_dend-dispatch | 0 | 0 | 0 | |
| row_order-Heatmap-method | 0 | 0 | 0 | |
| row_order-HeatmapList-method | 0 | 0 | 0 | |
| row_order-dispatch | 0 | 0 | 0 | |
| select | 0 | 0 | 0 | |
| set_component_height-Heatmap-method | 0 | 0 | 0 | |
| show-ColorMapping-method | 0.02 | 0.00 | 0.01 | |
| show-Heatmap-method | 0.64 | 0.01 | 0.66 | |
| show-HeatmapAnnotation-method | 0.01 | 0.00 | 0.01 | |
| show-HeatmapList-method | 0 | 0 | 0 | |
| show-SingleAnnotation-method | 0 | 0 | 0 | |
| show-dispatch | 0 | 0 | 0 | |
| unify_mat_list | 0 | 0 | 0 | |
ComplexHeatmap.Rcheck/examples_x64/ComplexHeatmap-Ex.timings:
| name | user | system | elapsed | |
| AdditiveUnit-class | 0 | 0 | 0 | |
| AdditiveUnit | 0 | 0 | 0 | |
| ColorMapping-class | 0 | 0 | 0 | |
| ColorMapping | 0.04 | 0.00 | 0.05 | |
| ComplexHeatmap-package | 0 | 0 | 0 | |
| Heatmap-class | 0 | 0 | 0 | |
| Heatmap | 15.57 | 0.03 | 15.66 | |
| HeatmapAnnotation-class | 0 | 0 | 0 | |
| HeatmapAnnotation | 0.12 | 0.00 | 0.13 | |
| HeatmapList-class | 5.03 | 0.00 | 5.02 | |
| HeatmapList | 0 | 0 | 0 | |
| SingleAnnotation-class | 0 | 0 | 0 | |
| SingleAnnotation | 0.09 | 0.00 | 0.09 | |
| add.AdditiveUnit | 5.26 | 0.01 | 5.27 | |
| add_heatmap-Heatmap-method | 1.91 | 0.00 | 1.90 | |
| add_heatmap-HeatmapAnnotation-method | 0.64 | 0.00 | 0.64 | |
| add_heatmap-HeatmapList-method | 2.41 | 0.00 | 2.47 | |
| add_heatmap-dispatch | 0 | 0 | 0 | |
| anno_barplot | 0.02 | 0.00 | 0.01 | |
| anno_boxplot | 0.05 | 0.00 | 0.05 | |
| anno_density | 0.37 | 0.00 | 0.37 | |
| anno_histogram | 0.08 | 0.02 | 0.10 | |
| anno_points | 0.01 | 0.00 | 0.01 | |
| anno_text | 0.58 | 0.00 | 0.58 | |
| annotation_legend_size-HeatmapList-method | 0 | 0 | 0 | |
| color_mapping_legend-ColorMapping-method | 0.37 | 0.00 | 0.51 | |
| columnAnnotation | 0.03 | 0.00 | 0.03 | |
| column_anno_barplot | 0 | 0 | 0 | |
| column_anno_boxplot | 0 | 0 | 0 | |
| column_anno_density | 0 | 0 | 0 | |
| column_anno_histogram | 0 | 0 | 0 | |
| column_anno_points | 0 | 0 | 0 | |
| column_anno_text | 0 | 0 | 0 | |
| column_dend-Heatmap-method | 0 | 0 | 0 | |
| column_dend-HeatmapList-method | 0 | 0 | 0 | |
| column_dend-dispatch | 0 | 0 | 0 | |
| column_order-Heatmap-method | 0 | 0 | 0 | |
| column_order-HeatmapList-method | 0 | 0 | 0 | |
| column_order-dispatch | 0 | 0 | 0 | |
| component_height-Heatmap-method | 0 | 0 | 0 | |
| component_height-HeatmapList-method | 0 | 0 | 0 | |
| component_height-dispatch | 0 | 0 | 0 | |
| component_width-Heatmap-method | 0 | 0 | 0 | |
| component_width-HeatmapList-method | 0 | 0 | 0 | |
| component_width-dispatch | 0 | 0 | 0 | |
| decorate_annotation | 1.24 | 0.00 | 1.23 | |
| decorate_column_dend | 0 | 0 | 0 | |
| decorate_column_names | 0 | 0 | 0 | |
| decorate_column_title | 0 | 0 | 0 | |
| decorate_dend | 0.42 | 0.00 | 0.42 | |
| decorate_dimnames | 0.46 | 0.00 | 0.47 | |
| decorate_heatmap_body | 0.53 | 0.00 | 0.53 | |
| decorate_row_dend | 0 | 0 | 0 | |
| decorate_row_names | 0 | 0 | 0 | |
| decorate_row_title | 0 | 0 | 0 | |
| decorate_title | 0.42 | 0.00 | 0.42 | |
| densityHeatmap | 5.56 | 0.02 | 5.68 | |
| dist2 | 0 | 0 | 0 | |
| draw-Heatmap-method | 0.52 | 0.00 | 0.52 | |
| draw-HeatmapAnnotation-method | 0.18 | 0.00 | 0.19 | |
| draw-HeatmapList-method | 1.81 | 0.00 | 1.81 | |
| draw-SingleAnnotation-method | 0.19 | 0.02 | 0.20 | |
| draw-dispatch | 0 | 0 | 0 | |
| draw_annotation-Heatmap-method | 0 | 0 | 0 | |
| draw_annotation_legend-HeatmapList-method | 0 | 0 | 0 | |
| draw_dend-Heatmap-method | 0 | 0 | 0 | |
| draw_dimnames-Heatmap-method | 0 | 0 | 0 | |
| draw_heatmap_body-Heatmap-method | 0 | 0 | 0 | |
| draw_heatmap_legend-HeatmapList-method | 0 | 0 | 0 | |
| draw_heatmap_list-HeatmapList-method | 0 | 0 | 0 | |
| draw_title-Heatmap-method | 0 | 0 | 0 | |
| draw_title-HeatmapList-method | 0.01 | 0.00 | 0.02 | |
| draw_title-dispatch | 0 | 0 | 0 | |
| enhanced_basicplot | 1.80 | 0.00 | 1.85 | |
| get_color_mapping_list-HeatmapAnnotation-method | 0 | 0 | 0 | |
| get_color_mapping_param_list-HeatmapAnnotation-method | 0 | 0 | 0 | |
| grid.dendrogram | 0.03 | 0.00 | 0.03 | |
| heatmap_legend_size-HeatmapList-method | 0 | 0 | 0 | |
| ht_global_opt | 0 | 0 | 0 | |
| is_abs_unit | 0 | 0 | 0 | |
| make_column_cluster-Heatmap-method | 0 | 0 | 0 | |
| make_layout-Heatmap-method | 0 | 0 | 0 | |
| make_layout-HeatmapList-method | 0 | 0 | 0 | |
| make_layout-dispatch | 0 | 0 | 0 | |
| make_row_cluster-Heatmap-method | 0 | 0 | 0 | |
| map_to_colors-ColorMapping-method | 0.04 | 0.00 | 0.05 | |
| max_text_height | 0.02 | 0.00 | 0.02 | |
| max_text_width | 0.01 | 0.00 | 0.02 | |
| oncoPrint | 0 | 0 | 0 | |
| plotDataFrame | 3.34 | 0.00 | 3.33 | |
| prepare-Heatmap-method | 0 | 0 | 0 | |
| rowAnnotation | 0.02 | 0.00 | 0.02 | |
| row_anno_barplot | 0 | 0 | 0 | |
| row_anno_boxplot | 0 | 0 | 0 | |
| row_anno_density | 0 | 0 | 0 | |
| row_anno_histogram | 0 | 0 | 0 | |
| row_anno_points | 0 | 0 | 0 | |
| row_anno_text | 0 | 0 | 0 | |
| row_dend-Heatmap-method | 0 | 0 | 0 | |
| row_dend-HeatmapList-method | 0 | 0 | 0 | |
| row_dend-dispatch | 0 | 0 | 0 | |
| row_order-Heatmap-method | 0 | 0 | 0 | |
| row_order-HeatmapList-method | 0 | 0 | 0 | |
| row_order-dispatch | 0 | 0 | 0 | |
| select | 0 | 0 | 0 | |
| set_component_height-Heatmap-method | 0 | 0 | 0 | |
| show-ColorMapping-method | 0 | 0 | 0 | |
| show-Heatmap-method | 0.81 | 0.00 | 0.81 | |
| show-HeatmapAnnotation-method | 0 | 0 | 0 | |
| show-HeatmapList-method | 0 | 0 | 0 | |
| show-SingleAnnotation-method | 0 | 0 | 0 | |
| show-dispatch | 0 | 0 | 0 | |
| unify_mat_list | 0 | 0 | 0 | |