Back to the "Multiple platform build/check report" A  B [C] D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.2: BUILD BIN report for CNAnorm on oaxaca

This page was generated on 2016-04-23 10:25:28 -0700 (Sat, 23 Apr 2016).

Package 192/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CNAnorm 1.16.0
Stefano Berri
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/CNAnorm
Last Changed Rev: 109589 / Revision: 116712
Last Changed Date: 2015-10-13 12:36:05 -0700 (Tue, 13 Oct 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: CNAnorm
Version: 1.16.0
Command: rm -rf CNAnorm.buildbin-libdir && mkdir CNAnorm.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CNAnorm_1.16.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CNAnorm.buildbin-libdir
StartedAt: 2016-04-23 05:34:19 -0700 (Sat, 23 Apr 2016)
EndedAt: 2016-04-23 05:34:23 -0700 (Sat, 23 Apr 2016)
EllapsedTime: 4.1 seconds
RetCode: 0
Status:  OK 
PackageFile: CNAnorm_1.16.0.tgz
PackageFileSize: 778.7 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf CNAnorm.buildbin-libdir && mkdir CNAnorm.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CNAnorm_1.16.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CNAnorm.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=CNAnorm.buildbin-libdir CNAnorm_1.16.0.tar.gz'
>>>>>>> 

* installing *source* package ‘CNAnorm’ ...
** libs
gfortran-4.8   -fPIC  -g -O2 -Wall  -c daxpy.f -o daxpy.o
gfortran-4.8   -fPIC  -g -O2 -Wall  -c ddot.f -o ddot.o
gfortran-4.8   -fPIC  -g -O2 -Wall  -c dgbfa.f -o dgbfa.o
gfortran-4.8   -fPIC  -g -O2 -Wall  -c dgbsl.f -o dgbsl.o
gfortran-4.8   -fPIC  -g -O2 -Wall  -c dscal.f -o dscal.o
gfortran-4.8   -fPIC  -g -O2 -Wall  -c dsmooth.f -o dsmooth.o
Warning: Nonconforming tab character in column 1 of line 14
Warning: Nonconforming tab character in column 1 of line 15
Warning: Nonconforming tab character in column 1 of line 16
Warning: Nonconforming tab character in column 1 of line 17
Warning: Nonconforming tab character in column 1 of line 18
Warning: Nonconforming tab character in column 1 of line 19
Warning: Nonconforming tab character in column 1 of line 20
Warning: Nonconforming tab character in column 1 of line 21
Warning: Nonconforming tab character in column 1 of line 22
Warning: Nonconforming tab character in column 3 of line 23
Warning: Nonconforming tab character in column 1 of line 24
Warning: Nonconforming tab character in column 1 of line 25
Warning: Nonconforming tab character in column 1 of line 26
Warning: Nonconforming tab character in column 1 of line 27
Warning: Nonconforming tab character in column 1 of line 28
Warning: Nonconforming tab character in column 1 of line 29
Warning: Nonconforming tab character in column 1 of line 30
Warning: Nonconforming tab character in column 1 of line 31
Warning: Nonconforming tab character in column 2 of line 32
Warning: Nonconforming tab character in column 1 of line 33
Warning: Nonconforming tab character in column 1 of line 34
Warning: Nonconforming tab character in column 1 of line 35
Warning: Nonconforming tab character in column 3 of line 36
Warning: Nonconforming tab character in column 1 of line 37
Warning: Nonconforming tab character in column 1 of line 38
Warning: Nonconforming tab character in column 3 of line 39
Warning: Nonconforming tab character in column 1 of line 40
Warning: Nonconforming tab character in column 1 of line 41
Warning: Nonconforming tab character in column 1 of line 42
Warning: Nonconforming tab character in column 4 of line 43
Warning: Nonconforming tab character in column 1 of line 44
Warning: Nonconforming tab character in column 1 of line 45
Warning: Nonconforming tab character in column 1 of line 46
Warning: Nonconforming tab character in column 1 of line 47
Warning: Nonconforming tab character in column 1 of line 48
Warning: Nonconforming tab character in column 1 of line 50
Warning: Nonconforming tab character in column 1 of line 51
Warning: Nonconforming tab character in column 1 of line 52
Warning: Nonconforming tab character in column 1 of line 53
Warning: Nonconforming tab character in column 1 of line 54
Warning: Nonconforming tab character in column 1 of line 55
Warning: Nonconforming tab character in column 1 of line 56
Warning: Nonconforming tab character in column 1 of line 57
Warning: Nonconforming tab character in column 1 of line 58
Warning: Nonconforming tab character in column 1 of line 59
Warning: Nonconforming tab character in column 1 of line 60
Warning: Nonconforming tab character in column 1 of line 61
Warning: Nonconforming tab character in column 1 of line 62
Warning: Nonconforming tab character in column 1 of line 63
Warning: Nonconforming tab character in column 3 of line 64
Warning: Nonconforming tab character in column 1 of line 65
Warning: Nonconforming tab character in column 1 of line 66
Warning: Nonconforming tab character in column 3 of line 67
Warning: Nonconforming tab character in column 1 of line 68
Warning: Nonconforming tab character in column 1 of line 69
Warning: Nonconforming tab character in column 3 of line 71
Warning: Nonconforming tab character in column 1 of line 72
Warning: Nonconforming tab character in column 1 of line 73
Warning: Nonconforming tab character in column 3 of line 74
Warning: Nonconforming tab character in column 1 of line 75
Warning: Nonconforming tab character in column 1 of line 76
Warning: Nonconforming tab character in column 1 of line 77
Warning: Nonconforming tab character in column 1 of line 78
Warning: Nonconforming tab character in column 1 of line 79
Warning: Nonconforming tab character in column 3 of line 80
Warning: Nonconforming tab character in column 1 of line 81
Warning: Nonconforming tab character in column 1 of line 82
Warning: Nonconforming tab character in column 3 of line 83
Warning: Nonconforming tab character in column 1 of line 84
Warning: Nonconforming tab character in column 1 of line 85
Warning: Nonconforming tab character in column 1 of line 87
Warning: Nonconforming tab character in column 1 of line 88
Warning: Nonconforming tab character in column 1 of line 89
Warning: Nonconforming tab character in column 1 of line 90
Warning: Nonconforming tab character in column 3 of line 91
Warning: Nonconforming tab character in column 1 of line 92
Warning: Nonconforming tab character in column 1 of line 93
Warning: Nonconforming tab character in column 3 of line 94
Warning: Nonconforming tab character in column 1 of line 95
Warning: Nonconforming tab character in column 1 of line 96
dsmooth.f:62.20:

      do 10 i=1,n-1                                                     
                    1
Warning: Nonconforming tab character at (1)
dsmooth.f:70.7:

     &       diff(i-1)*diff(i+1) .lt. 0.) isplit(i)=1                   
       1
Warning: Nonconforming tab character at (1)
dsmooth.f: In function ‘amed3’:
dsmooth.f:50:0: warning: ‘__result_amed3’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  function amed3(a,b,c)
 ^
gfortran-4.8   -fPIC  -g -O2 -Wall  -c idamax.f -o idamax.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CNAnorm.so daxpy.o ddot.o dgbfa.o dgbsl.o dscal.o dsmooth.o idamax.o -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.2-bioc/meat/CNAnorm.buildbin-libdir/CNAnorm/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (CNAnorm)


>>>>>>> 
>>>>>>> FIXING LINKS FOR CNAnorm.buildbin-libdir/CNAnorm/libs//CNAnorm.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgcc_s.1.dylib" "CNAnorm.buildbin-libdir/CNAnorm/libs//CNAnorm.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgfortran.3.dylib" "CNAnorm.buildbin-libdir/CNAnorm/libs//CNAnorm.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.5.2.dylib" "CNAnorm.buildbin-libdir/CNAnorm/libs//CNAnorm.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.dylib" "CNAnorm.buildbin-libdir/CNAnorm/libs//CNAnorm.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libquadmath.0.dylib" "CNAnorm.buildbin-libdir/CNAnorm/libs//CNAnorm.so"