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This page was generated on 2024-05-02 14:51:33 -0400 (Thu, 02 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" 4753
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 245/430HostnameOS / ArchINSTALLBUILDCHECK
miRNATarget 1.42.0  (landing page)
Y-h. Taguchi
Snapshot Date: 2024-05-02 07:30:02 -0400 (Thu, 02 May 2024)
git_url: https://git.bioconductor.org/packages/miRNATarget
git_branch: RELEASE_3_19
git_last_commit: b454d34
git_last_commit_date: 2024-04-30 10:31:34 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  YES

CHECK results for miRNATarget on nebbiolo1


To the developers/maintainers of the miRNATarget package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: miRNATarget
Version: 1.42.0
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:miRNATarget.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings miRNATarget_1.42.0.tar.gz
StartedAt: 2024-05-02 12:14:16 -0400 (Thu, 02 May 2024)
EndedAt: 2024-05-02 12:15:37 -0400 (Thu, 02 May 2024)
EllapsedTime: 81.2 seconds
RetCode: 0
Status:   OK  
CheckDir: miRNATarget.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:miRNATarget.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings miRNATarget_1.42.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.19-data-experiment/meat/miRNATarget.Rcheck’
* using R version 4.4.0 beta (2024-04-15 r86425)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘miRNATarget/DESCRIPTION’ ... OK
* this is package ‘miRNATarget’ version ‘1.42.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  vignettes/.goutputstream-8N717W
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘miRNATarget’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 54.6Mb
  sub-directories of 1Mb or more:
    data  54.4Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.19-data-experiment/meat/miRNATarget.Rcheck/00check.log’
for details.


Installation output

miRNATarget.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL miRNATarget
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’
* installing *source* package ‘miRNATarget’ ...
** using staged installation
** data
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (miRNATarget)

Tests output


Example timings

miRNATarget.Rcheck/miRNATarget-Ex.timings

nameusersystemelapsed
HS_conv_id0.0100.0030.015
HS_refseq_to_affy_hc_g1100.0040.0000.004
HS_refseq_to_affy_hg_focus0.0160.0000.016
HS_refseq_to_affy_hg_u133_plus_20.0570.0000.057
HS_refseq_to_affy_hg_u133a0.0340.0000.034
HS_refseq_to_affy_hg_u133a_20.0340.0000.034
HS_refseq_to_affy_hg_u133b0.0170.0000.017
HS_refseq_to_affy_hg_u95a0.0220.0000.022
HS_refseq_to_affy_hg_u95av20.0210.0000.021
HS_refseq_to_affy_hg_u95b0.0140.0000.015
HS_refseq_to_affy_hg_u95c0.0110.0000.011
HS_refseq_to_affy_hg_u95d0.0070.0000.006
HS_refseq_to_affy_hg_u95e0.010.000.01
HS_refseq_to_affy_huex_1_0_st_v20.730.020.75
HS_refseq_to_affy_hugene_1_0_st_v10.1070.0040.111
HS_refseq_to_affy_hugenefl0.0120.0000.013
HS_refseq_to_affy_u133_x3p0.0620.0000.062
HS_refseq_to_agilent_cgh_44b0.0110.0000.011
HS_refseq_to_agilent_wholegenome0.0660.0000.066
HS_refseq_to_canonical_transcript_stable_id0.0640.0000.065
HS_refseq_to_ccds0.0330.0000.033
HS_refseq_to_codelink0.0350.0000.035
HS_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.0010.0000.002
HS_refseq_to_efg_agilent_wholegenome_4x44k_v10.0010.0000.001
HS_refseq_to_efg_agilent_wholegenome_4x44k_v20.0010.0000.001
HS_refseq_to_embl0.6350.0120.647
HS_refseq_to_ensembl_exon_id0.0010.0000.001
HS_refseq_to_ensembl_gene_id0.0440.0040.048
HS_refseq_to_ensembl_peptide_id0.0400.0040.044
HS_refseq_to_ensembl_transcript_id0.0530.0000.053
HS_refseq_to_entrezgene0.0520.0000.051
HS_refseq_to_hgnc_id0.0450.0040.049
HS_refseq_to_hgnc_symbol0.1190.0040.122
HS_refseq_to_hgnc_transcript_name0.0410.0070.049
HS_refseq_to_illumina_humanht_120.050.000.05
HS_refseq_to_illumina_humanwg_6_v10.0420.0040.046
HS_refseq_to_illumina_humanwg_6_v20.0320.0040.036
HS_refseq_to_illumina_humanwg_6_v30.0360.0080.044
HS_refseq_to_interpro0.1120.0000.111
HS_refseq_to_ipi0.1550.0000.155
HS_refseq_to_merops0.0050.0000.004
HS_refseq_to_pdb0.0850.0000.085
HS_refseq_to_pfam0.0640.0000.064
HS_refseq_to_phalanx_onearray0.040.000.04
HS_refseq_to_protein_id1.2200.0121.232
HS_refseq_to_refseq_dna0.0580.0000.057
HS_refseq_to_refseq_genomic0.0010.0000.001
HS_refseq_to_refseq_peptide0.0870.0040.091
HS_refseq_to_rfam0.0020.0000.002
HS_refseq_to_rfam_gene_name0.0010.0000.001
HS_refseq_to_rfam_transcript_name0.0010.0000.002
HS_refseq_to_smart0.0360.0000.036
HS_refseq_to_tigrfam0.0070.0000.006
HS_refseq_to_ucsc0.0580.0000.058
HS_refseq_to_unigene0.0570.0070.064
HS_refseq_to_uniprot_genename0.0400.0040.044
HS_refseq_to_uniprot_genename_transcript_name0.0020.0000.001
HS_refseq_to_uniprot_sptrembl0.0010.0000.001
HS_refseq_to_uniprot_swissprot0.0010.0000.001
HS_refseq_to_uniprot_swissprot_accession0.0020.0000.001
HS_refseq_to_wikigene_id0.0010.0000.001
HS_refseq_to_wikigene_name0.0450.0000.046
MM_conv_id0.0030.0000.002
MM_refseq_to_affy_mg_u74a0.0160.0000.016
MM_refseq_to_affy_mg_u74av20.0130.0000.013
MM_refseq_to_affy_mg_u74b0.0080.0040.012
MM_refseq_to_affy_mg_u74bv20.0120.0000.012
MM_refseq_to_affy_mg_u74c0.0050.0000.004
MM_refseq_to_affy_mg_u74cv20.0060.0000.006
MM_refseq_to_affy_moe430a0.0310.0000.031
MM_refseq_to_affy_moe430b0.0150.0000.015
MM_refseq_to_affy_moex_1_0_st_v10.3510.0230.375
MM_refseq_to_affy_mogene_1_0_st_v10.0390.0000.038
MM_refseq_to_affy_mouse430_20.0420.0000.042
MM_refseq_to_affy_mouse430a_20.030.000.03
MM_refseq_to_affy_mu11ksuba0.0120.0000.012
MM_refseq_to_affy_mu11ksubb0.0090.0000.009
MM_refseq_to_agilent_wholegenome0.0550.0040.060
MM_refseq_to_canonical_transcript_stable_id0.0520.0030.056
MM_refseq_to_ccds0.0290.0000.029
MM_refseq_to_codelink0.0320.0000.032
MM_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.0010.0010.002
MM_refseq_to_efg_agilent_wholegenome_4x44k_v10.0000.0020.002
MM_refseq_to_efg_agilent_wholegenome_4x44k_v20.0000.0010.001
MM_refseq_to_embl0.2760.0120.287
MM_refseq_to_ensembl_exon_id0.0020.0000.001
MM_refseq_to_ensembl_gene_id0.1650.0000.166
MM_refseq_to_ensembl_peptide_id0.0330.0000.034
MM_refseq_to_ensembl_transcript_id0.0370.0000.037
MM_refseq_to_entrezgene0.0330.0000.032
MM_refseq_to_fantom0.0980.0000.097
MM_refseq_to_illumina_mousewg_6_v10.0480.0000.047
MM_refseq_to_illumina_mousewg_6_v20.0470.0000.047
MM_refseq_to_interpro0.0950.0000.096
MM_refseq_to_ipi0.0000.0010.001
MM_refseq_to_merops0.0010.0020.004
MM_refseq_to_mgi_id0.0360.0000.036
MM_refseq_to_mgi_symbol0.0370.0000.038
MM_refseq_to_mgi_transcript_name0.0360.0040.040
MM_refseq_to_pdb0.0100.0000.009
MM_refseq_to_pfam0.0560.0000.055
MM_refseq_to_phalanx_onearray0.0360.0000.037
MM_refseq_to_protein_id0.2690.0030.273
MM_refseq_to_refseq_dna0.0460.0010.046
MM_refseq_to_refseq_peptide0.0730.0000.074
MM_refseq_to_rfam0.0020.0000.001
MM_refseq_to_rfam_gene_name0.0000.0010.001
MM_refseq_to_rfam_transcript_name0.0000.0010.001
MM_refseq_to_smart0.0190.0090.028
MM_refseq_to_tigrfam0.0040.0000.005
MM_refseq_to_ucsc0.040.000.04
MM_refseq_to_unigene0.0470.0030.050
MM_refseq_to_uniprot_genename0.0360.0000.037
MM_refseq_to_uniprot_genename_transcript_name0.0010.0000.002
MM_refseq_to_uniprot_sptrembl0.0000.0010.001
MM_refseq_to_uniprot_swissprot0.0000.0010.001
MM_refseq_to_uniprot_swissprot_accession0.0000.0000.001
MM_refseq_to_wikigene_id0.0010.0010.001
MM_refseq_to_wikigene_name0.0350.0000.035
TBL21.3320.1001.432
TBL2_HS1.5230.1591.683
TBL2_MM0.7950.1430.939
conv_id0.0020.0000.002
id_conv0.0280.0000.028