Back to Long Tests report for BioC 3.19 |
This page was generated on 2024-05-04 23:55:02 -0400 (Sat, 04 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" | 4753 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 beta (2024-04-15 r86425 ucrt) -- "Puppy Cup" | 4486 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 beta (2024-04-14 r86421) -- "Puppy Cup" | 4519 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 18/33 | Hostname | OS / Arch | CHECK | |||||||
crisprScore 1.8.0 (landing page) Jean-Philippe Fortin
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | |||||||
palomino3 | Windows Server 2022 Datacenter / x64 | ERROR | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | ||||||||
To the developers/maintainers of the crisprScore package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: crisprScore |
Version: 1.8.0 |
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no crisprScore_1.8.0.tar.gz |
StartedAt: 2024-05-04 16:23:03 -0400 (Sat, 04 May 2024) |
EndedAt: 2024-05-04 16:59:38 -0400 (Sat, 04 May 2024) |
EllapsedTime: 2195.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: crisprScore.Rcheck |
Warnings: 0 |
crisprScore.Rcheck/tests/testthat.Rout
R version 4.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(crisprScore) Loading required package: crisprScoreData Loading required package: ExperimentHub Loading required package: BiocGenerics Attaching package: 'BiocGenerics' The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, table, tapply, union, unique, unsplit, which.max, which.min Loading required package: AnnotationHub Loading required package: BiocFileCache Loading required package: dbplyr > > test_check("crisprScore") Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /var/cache/basilisk/1.16.0/crisprScore/1.8.0/azimuth_basilisk added / updated specs: - python=2.7 The following NEW packages will be INSTALLED: _libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge _openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu ca-certificates conda-forge/linux-64::ca-certificates-2024.2.2-hbcca054_0 certifi conda-forge/linux-64::certifi-2019.11.28-py27h8c360ce_1 ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.40-h55db66e_0 libffi conda-forge/linux-64::libffi-3.2.1-he1b5a44_1007 libgcc-ng conda-forge/linux-64::libgcc-ng-13.2.0-h77fa898_6 libgomp conda-forge/linux-64::libgomp-13.2.0-h77fa898_6 libsqlite conda-forge/linux-64::libsqlite-3.45.3-h2797004_0 libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-13.2.0-hc0a3c3a_6 libzlib conda-forge/linux-64::libzlib-1.2.13-hd590300_5 ncurses conda-forge/linux-64::ncurses-6.4.20240210-h59595ed_0 openssl conda-forge/linux-64::openssl-1.1.1w-hd590300_0 pip conda-forge/noarch::pip-20.1.1-pyh9f0ad1d_0 python conda-forge/linux-64::python-2.7.15-h5a48372_1011_cpython python_abi conda-forge/linux-64::python_abi-2.7-1_cp27mu readline conda-forge/linux-64::readline-8.2-h8228510_1 setuptools conda-forge/linux-64::setuptools-44.0.0-py27_0 sqlite conda-forge/linux-64::sqlite-3.45.3-h2c6b66d_0 tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101 wheel conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0 zlib conda-forge/linux-64::zlib-1.2.13-hd590300_5 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.12.0 latest version: 24.4.0 Please update conda by running $ conda update -n base -c defaults conda # All requested packages already installed. Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve. Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.12.0 latest version: 24.4.0 Please update conda by running $ conda update -n base -c defaults conda ## Package Plan ## environment location: /var/cache/basilisk/1.16.0/crisprScore/1.8.0/azimuth_basilisk added / updated specs: - biopython=1.74 - certifi=2019.11.28 - cycler=0.10.0 - futures=3.3.0 - kiwisolver=1.1.0 - matplotlib=2.2.3 - mmtf-python=1.1.2 - nose=1.3.7 - numpy=1.11.3 - olefile=0.46 - pandas=0.23.4 - pillow=6.2.1 - pip=20.1.1 - pyparsing=2.4.7 - python-dateutil=2.8.1 - python[version='2.7.*,2.7.*'] - pytz=2020.1 - reportlab=3.5.42 - scipy=1.2.1 - setuptools=44.0.0 - six=1.15.0 - subprocess32=3.5.4 - tornado=5.1.1 - wheel=0.36.2 The following packages will be downloaded: package | build ---------------------------|----------------- backports-1.0 | pyhd8ed1ab_3 6 KB conda-forge backports.functools_lru_cache-1.6.1| py_0 8 KB conda-forge backports_abc-0.5 | py_1 5 KB conda-forge biopython-1.74 | py27h516909a_0 2.5 MB conda-forge dbus-1.13.6 | hfdff14a_1 585 KB conda-forge functools32-3.2.3.2 | py_3 15 KB conda-forge futures-3.3.0 | py27h8c360ce_1 26 KB conda-forge gettext-0.22.5 | h59595ed_2 464 KB conda-forge gettext-tools-0.22.5 | h59595ed_2 2.6 MB conda-forge glib-2.66.3 | h58526e2_0 500 KB conda-forge gst-plugins-base-1.14.5 | h0935bb2_2 6.8 MB conda-forge gstreamer-1.14.5 | h36ae1b5_2 4.5 MB conda-forge icu-58.2 | hf484d3e_1000 22.6 MB conda-forge kiwisolver-1.1.0 | py27h9e3301b_1 88 KB conda-forge libasprintf-0.22.5 | h661eb56_2 42 KB conda-forge libasprintf-devel-0.22.5 | h661eb56_2 33 KB conda-forge libblas-3.9.0 | 8_openblas 11 KB conda-forge libcblas-3.9.0 | 8_openblas 11 KB conda-forge libgettextpo-0.22.5 | h59595ed_2 167 KB conda-forge libgettextpo-devel-0.22.5 | h59595ed_2 36 KB conda-forge libgfortran-ng-7.5.0 | h14aa051_20 23 KB conda-forge libgfortran4-7.5.0 | h14aa051_20 1.2 MB conda-forge libglib-2.66.3 | hbe7bbb4_0 3.0 MB conda-forge liblapack-3.9.0 | 8_openblas 11 KB conda-forge libopenblas-0.3.12 |pthreads_hb3c22a3_1 8.2 MB conda-forge libxcb-1.16 | hd590300_0 386 KB conda-forge libxml2-2.9.9 | h13577e0_2 1.3 MB conda-forge matplotlib-2.2.3 | py27h8a2030e_1 7 KB conda-forge matplotlib-base-2.2.3 | py27h60b886d_1 6.4 MB conda-forge mmtf-python-1.1.2 | py_0 21 KB conda-forge msgpack-python-1.0.0 | py27h9e3301b_1 28 KB conda-forge nose-1.3.7 |py27h8c360ce_1004 216 KB conda-forge numpy-1.11.3 |py27he5ce36f_1207 3.6 MB conda-forge pandas-0.23.4 |py27h637b7d7_1000 9.8 MB conda-forge pcre-8.45 | h9c3ff4c_0 253 KB conda-forge pillow-6.2.1 | py27hd70f55b_1 625 KB conda-forge pyparsing-2.4.7 | pyh9f0ad1d_0 60 KB conda-forge pyqt-5.6.0 |py27h13b7fb3_1008 5.2 MB conda-forge qt-5.6.3 | h8bf5577_3 36.4 MB reportlab-3.5.42 | py27heca39a3_0 2.4 MB conda-forge scipy-1.2.1 | py27h09a28d5_1 18.1 MB conda-forge singledispatch-3.6.1 | pyh44b312d_0 12 KB conda-forge sip-4.18.1 |py27hf484d3e_1000 278 KB conda-forge subprocess32-3.5.4 | py27h516909a_0 46 KB conda-forge tornado-5.1.1 |py27h14c3975_1000 642 KB conda-forge wheel-0.36.2 | pyhd3deb0d_0 31 KB conda-forge zstd-1.5.6 | ha6fb4c9_0 542 KB conda-forge ------------------------------------------------------------ Total: 139.6 MB The following NEW packages will be INSTALLED: backports conda-forge/noarch::backports-1.0-pyhd8ed1ab_3 backports.functoo~ conda-forge/noarch::backports.functools_lru_cache-1.6.1-py_0 backports_abc conda-forge/noarch::backports_abc-0.5-py_1 biopython conda-forge/linux-64::biopython-1.74-py27h516909a_0 cycler conda-forge/noarch::cycler-0.10.0-py_2 dbus conda-forge/linux-64::dbus-1.13.6-hfdff14a_1 expat conda-forge/linux-64::expat-2.6.2-h59595ed_0 fontconfig conda-forge/linux-64::fontconfig-2.14.2-h14ed4e7_0 freetype conda-forge/linux-64::freetype-2.12.1-h267a509_2 functools32 conda-forge/noarch::functools32-3.2.3.2-py_3 futures conda-forge/linux-64::futures-3.3.0-py27h8c360ce_1 gettext conda-forge/linux-64::gettext-0.22.5-h59595ed_2 gettext-tools conda-forge/linux-64::gettext-tools-0.22.5-h59595ed_2 glib conda-forge/linux-64::glib-2.66.3-h58526e2_0 gst-plugins-base conda-forge/linux-64::gst-plugins-base-1.14.5-h0935bb2_2 gstreamer conda-forge/linux-64::gstreamer-1.14.5-h36ae1b5_2 icu conda-forge/linux-64::icu-58.2-hf484d3e_1000 jpeg conda-forge/linux-64::jpeg-9e-h0b41bf4_3 kiwisolver conda-forge/linux-64::kiwisolver-1.1.0-py27h9e3301b_1 libasprintf conda-forge/linux-64::libasprintf-0.22.5-h661eb56_2 libasprintf-devel conda-forge/linux-64::libasprintf-devel-0.22.5-h661eb56_2 libblas conda-forge/linux-64::libblas-3.9.0-8_openblas libcblas conda-forge/linux-64::libcblas-3.9.0-8_openblas libexpat conda-forge/linux-64::libexpat-2.6.2-h59595ed_0 libgettextpo conda-forge/linux-64::libgettextpo-0.22.5-h59595ed_2 libgettextpo-devel conda-forge/linux-64::libgettextpo-devel-0.22.5-h59595ed_2 libgfortran-ng conda-forge/linux-64::libgfortran-ng-7.5.0-h14aa051_20 libgfortran4 conda-forge/linux-64::libgfortran4-7.5.0-h14aa051_20 libglib conda-forge/linux-64::libglib-2.66.3-hbe7bbb4_0 libiconv conda-forge/linux-64::libiconv-1.17-hd590300_2 liblapack conda-forge/linux-64::liblapack-3.9.0-8_openblas libopenblas conda-forge/linux-64::libopenblas-0.3.12-pthreads_hb3c22a3_1 libpng conda-forge/linux-64::libpng-1.6.43-h2797004_0 libtiff conda-forge/linux-64::libtiff-4.2.0-hf544144_3 libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0 libwebp-base conda-forge/linux-64::libwebp-base-1.4.0-hd590300_0 libxcb conda-forge/linux-64::libxcb-1.16-hd590300_0 libxml2 conda-forge/linux-64::libxml2-2.9.9-h13577e0_2 matplotlib conda-forge/linux-64::matplotlib-2.2.3-py27h8a2030e_1 matplotlib-base conda-forge/linux-64::matplotlib-base-2.2.3-py27h60b886d_1 mmtf-python conda-forge/noarch::mmtf-python-1.1.2-py_0 msgpack-python conda-forge/linux-64::msgpack-python-1.0.0-py27h9e3301b_1 nose conda-forge/linux-64::nose-1.3.7-py27h8c360ce_1004 numpy conda-forge/linux-64::numpy-1.11.3-py27he5ce36f_1207 olefile conda-forge/noarch::olefile-0.46-pyh9f0ad1d_1 pandas conda-forge/linux-64::pandas-0.23.4-py27h637b7d7_1000 pcre conda-forge/linux-64::pcre-8.45-h9c3ff4c_0 pillow conda-forge/linux-64::pillow-6.2.1-py27hd70f55b_1 pthread-stubs conda-forge/linux-64::pthread-stubs-0.4-h36c2ea0_1001 pyparsing conda-forge/noarch::pyparsing-2.4.7-pyh9f0ad1d_0 pyqt conda-forge/linux-64::pyqt-5.6.0-py27h13b7fb3_1008 python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0 pytz conda-forge/noarch::pytz-2020.1-pyh9f0ad1d_0 qt pkgs/main/linux-64::qt-5.6.3-h8bf5577_3 reportlab conda-forge/linux-64::reportlab-3.5.42-py27heca39a3_0 scipy conda-forge/linux-64::scipy-1.2.1-py27h09a28d5_1 singledispatch conda-forge/noarch::singledispatch-3.6.1-pyh44b312d_0 sip conda-forge/linux-64::sip-4.18.1-py27hf484d3e_1000 six conda-forge/noarch::six-1.15.0-pyh9f0ad1d_0 subprocess32 conda-forge/linux-64::subprocess32-3.5.4-py27h516909a_0 tornado conda-forge/linux-64::tornado-5.1.1-py27h14c3975_1000 xorg-libxau conda-forge/linux-64::xorg-libxau-1.0.11-hd590300_0 xorg-libxdmcp conda-forge/linux-64::xorg-libxdmcp-1.1.3-h7f98852_0 xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0 zstd conda-forge/linux-64::zstd-1.5.6-ha6fb4c9_0 The following packages will be DOWNGRADED: wheel 0.37.1-pyhd8ed1ab_0 --> 0.36.2-pyhd3deb0d_0 Downloading and Extracting Packages libgfortran-ng-7.5.0 | 23 KB | | 0% libgfortran-ng-7.5.0 | 23 KB | ######9 | 70% libgfortran-ng-7.5.0 | 23 KB | ########## | 100% libxml2-2.9.9 | 1.3 MB | | 0% libxml2-2.9.9 | 1.3 MB | #3 | 13% libxml2-2.9.9 | 1.3 MB | ########## | 100% libxml2-2.9.9 | 1.3 MB | ########## | 100% libgettextpo-0.22.5 | 167 KB | | 0% libgettextpo-0.22.5 | 167 KB | ########## | 100% libgettextpo-0.22.5 | 167 KB | ########## | 100% liblapack-3.9.0 | 11 KB | | 0% liblapack-3.9.0 | 11 KB | ########## | 100% gstreamer-1.14.5 | 4.5 MB | | 0% gstreamer-1.14.5 | 4.5 MB | #8 | 19% gstreamer-1.14.5 | 4.5 MB | #####8 | 58% gstreamer-1.14.5 | 4.5 MB | #########4 | 95% gstreamer-1.14.5 | 4.5 MB | ########## | 100% backports_abc-0.5 | 5 KB | | 0% backports_abc-0.5 | 5 KB | ########## | 100% dbus-1.13.6 | 585 KB | | 0% dbus-1.13.6 | 585 KB | ########## | 100% dbus-1.13.6 | 585 KB | ########## | 100% msgpack-python-1.0.0 | 28 KB | | 0% msgpack-python-1.0.0 | 28 KB | ########## | 100% subprocess32-3.5.4 | 46 KB | | 0% subprocess32-3.5.4 | 46 KB | ########## | 100% pandas-0.23.4 | 9.8 MB | | 0% pandas-0.23.4 | 9.8 MB | 5 | 5% pandas-0.23.4 | 9.8 MB | ##2 | 23% pandas-0.23.4 | 9.8 MB | #### | 41% pandas-0.23.4 | 9.8 MB | #####8 | 58% pandas-0.23.4 | 9.8 MB | #######5 | 76% pandas-0.23.4 | 9.8 MB | #########3 | 93% pandas-0.23.4 | 9.8 MB | ########## | 100% pyqt-5.6.0 | 5.2 MB | | 0% pyqt-5.6.0 | 5.2 MB | #1 | 12% pyqt-5.6.0 | 5.2 MB | ####5 | 46% pyqt-5.6.0 | 5.2 MB | #######7 | 78% pyqt-5.6.0 | 5.2 MB | ########## | 100% pcre-8.45 | 253 KB | | 0% pcre-8.45 | 253 KB | ########## | 100% pcre-8.45 | 253 KB | ########## | 100% icu-58.2 | 22.6 MB | | 0% icu-58.2 | 22.6 MB | 4 | 5% icu-58.2 | 22.6 MB | #2 | 13% icu-58.2 | 22.6 MB | ## | 20% icu-58.2 | 22.6 MB | ##8 | 28% icu-58.2 | 22.6 MB | ###5 | 36% icu-58.2 | 22.6 MB | ####3 | 44% icu-58.2 | 22.6 MB | #####1 | 51% icu-58.2 | 22.6 MB | #####8 | 59% icu-58.2 | 22.6 MB | ######6 | 67% icu-58.2 | 22.6 MB | #######4 | 74% icu-58.2 | 22.6 MB | ########1 | 82% icu-58.2 | 22.6 MB | ########9 | 90% icu-58.2 | 22.6 MB | #########7 | 97% icu-58.2 | 22.6 MB | ########## | 100% futures-3.3.0 | 26 KB | | 0% futures-3.3.0 | 26 KB | ########## | 100% scipy-1.2.1 | 18.1 MB | | 0% scipy-1.2.1 | 18.1 MB | 4 | 5% scipy-1.2.1 | 18.1 MB | #3 | 14% scipy-1.2.1 | 18.1 MB | ##3 | 23% scipy-1.2.1 | 18.1 MB | ###2 | 33% scipy-1.2.1 | 18.1 MB | ####2 | 42% scipy-1.2.1 | 18.1 MB | #####1 | 51% scipy-1.2.1 | 18.1 MB | ###### | 60% scipy-1.2.1 | 18.1 MB | ######9 | 70% scipy-1.2.1 | 18.1 MB | #######9 | 80% scipy-1.2.1 | 18.1 MB | ########8 | 89% scipy-1.2.1 | 18.1 MB | #########8 | 98% scipy-1.2.1 | 18.1 MB | ########## | 100% glib-2.66.3 | 500 KB | | 0% glib-2.66.3 | 500 KB | ##8 | 29% glib-2.66.3 | 500 KB | #####7 | 58% glib-2.66.3 | 500 KB | ########## | 100% glib-2.66.3 | 500 KB | ########## | 100% libxcb-1.16 | 386 KB | | 0% libxcb-1.16 | 386 KB | ########## | 100% libxcb-1.16 | 386 KB | ########## | 100% reportlab-3.5.42 | 2.4 MB | | 0% reportlab-3.5.42 | 2.4 MB | ###7 | 38% reportlab-3.5.42 | 2.4 MB | #########9 | 99% reportlab-3.5.42 | 2.4 MB | ########## | 100% libasprintf-0.22.5 | 42 KB | | 0% libasprintf-0.22.5 | 42 KB | ########## | 100% libasprintf-0.22.5 | 42 KB | ########## | 100% libblas-3.9.0 | 11 KB | | 0% libblas-3.9.0 | 11 KB | ########## | 100% backports-1.0 | 6 KB | | 0% backports-1.0 | 6 KB | ########## | 100% backports-1.0 | 6 KB | ########## | 100% libgfortran4-7.5.0 | 1.2 MB | | 0% libgfortran4-7.5.0 | 1.2 MB | ######5 | 65% libgfortran4-7.5.0 | 1.2 MB | ########## | 100% biopython-1.74 | 2.5 MB | | 0% biopython-1.74 | 2.5 MB | ##5 | 26% biopython-1.74 | 2.5 MB | #########4 | 95% biopython-1.74 | 2.5 MB | ########## | 100% qt-5.6.3 | 36.4 MB | | 0% qt-5.6.3 | 36.4 MB | | 0% qt-5.6.3 | 36.4 MB | | 0% qt-5.6.3 | 36.4 MB | | 1% qt-5.6.3 | 36.4 MB | 1 | 1% qt-5.6.3 | 36.4 MB | 2 | 2% qt-5.6.3 | 36.4 MB | 4 | 4% qt-5.6.3 | 36.4 MB | 5 | 6% qt-5.6.3 | 36.4 MB | 7 | 8% qt-5.6.3 | 36.4 MB | 9 | 9% qt-5.6.3 | 36.4 MB | #1 | 11% qt-5.6.3 | 36.4 MB | #2 | 13% qt-5.6.3 | 36.4 MB | #4 | 15% qt-5.6.3 | 36.4 MB | #6 | 16% qt-5.6.3 | 36.4 MB | #8 | 18% qt-5.6.3 | 36.4 MB | #9 | 20% qt-5.6.3 | 36.4 MB | ##1 | 22% qt-5.6.3 | 36.4 MB | ##3 | 23% qt-5.6.3 | 36.4 MB | ##5 | 25% qt-5.6.3 | 36.4 MB | ##6 | 27% qt-5.6.3 | 36.4 MB | ##8 | 29% qt-5.6.3 | 36.4 MB | ### | 30% qt-5.6.3 | 36.4 MB | ###2 | 32% qt-5.6.3 | 36.4 MB | ###3 | 34% qt-5.6.3 | 36.4 MB | ###5 | 36% qt-5.6.3 | 36.4 MB | ###7 | 37% qt-5.6.3 | 36.4 MB | ###9 | 39% qt-5.6.3 | 36.4 MB | #### | 41% qt-5.6.3 | 36.4 MB | ####2 | 43% qt-5.6.3 | 36.4 MB | ####4 | 45% qt-5.6.3 | 36.4 MB | ####6 | 46% qt-5.6.3 | 36.4 MB | ####8 | 48% qt-5.6.3 | 36.4 MB | ####9 | 50% qt-5.6.3 | 36.4 MB | #####1 | 52% qt-5.6.3 | 36.4 MB | #####3 | 53% qt-5.6.3 | 36.4 MB | #####5 | 55% qt-5.6.3 | 36.4 MB | #####6 | 57% qt-5.6.3 | 36.4 MB | #####8 | 59% qt-5.6.3 | 36.4 MB | ###### | 60% qt-5.6.3 | 36.4 MB | ######2 | 62% qt-5.6.3 | 36.4 MB | ######3 | 64% qt-5.6.3 | 36.4 MB | ######5 | 66% qt-5.6.3 | 36.4 MB | ######7 | 67% qt-5.6.3 | 36.4 MB | ######9 | 69% qt-5.6.3 | 36.4 MB | ####### | 71% qt-5.6.3 | 36.4 MB | #######2 | 73% qt-5.6.3 | 36.4 MB | #######4 | 74% qt-5.6.3 | 36.4 MB | #######6 | 76% qt-5.6.3 | 36.4 MB | #######7 | 78% qt-5.6.3 | 36.4 MB | #######9 | 80% qt-5.6.3 | 36.4 MB | ########1 | 81% qt-5.6.3 | 36.4 MB | ########3 | 83% qt-5.6.3 | 36.4 MB | ########4 | 85% qt-5.6.3 | 36.4 MB | ########6 | 87% qt-5.6.3 | 36.4 MB | ########8 | 88% qt-5.6.3 | 36.4 MB | ######### | 90% qt-5.6.3 | 36.4 MB | #########1 | 92% qt-5.6.3 | 36.4 MB | #########3 | 94% qt-5.6.3 | 36.4 MB | #########5 | 95% qt-5.6.3 | 36.4 MB | #########7 | 97% qt-5.6.3 | 36.4 MB | #########8 | 99% qt-5.6.3 | 36.4 MB | ########## | 100% gettext-tools-0.22.5 | 2.6 MB | | 0% gettext-tools-0.22.5 | 2.6 MB | ####1 | 41% gettext-tools-0.22.5 | 2.6 MB | ########## | 100% gettext-tools-0.22.5 | 2.6 MB | ########## | 100% gettext-0.22.5 | 464 KB | | 0% gettext-0.22.5 | 464 KB | ########## | 100% gettext-0.22.5 | 464 KB | ########## | 100% mmtf-python-1.1.2 | 21 KB | | 0% mmtf-python-1.1.2 | 21 KB | ########## | 100% singledispatch-3.6.1 | 12 KB | | 0% singledispatch-3.6.1 | 12 KB | ########## | 100% tornado-5.1.1 | 642 KB | | 0% tornado-5.1.1 | 642 KB | ########## | 100% tornado-5.1.1 | 642 KB | ########## | 100% gst-plugins-base-1.1 | 6.8 MB | | 0% gst-plugins-base-1.1 | 6.8 MB | #2 | 12% gst-plugins-base-1.1 | 6.8 MB | ###7 | 37% gst-plugins-base-1.1 | 6.8 MB | ######2 | 63% gst-plugins-base-1.1 | 6.8 MB | ########8 | 88% gst-plugins-base-1.1 | 6.8 MB | ########## | 100% matplotlib-base-2.2. | 6.4 MB | | 0% matplotlib-base-2.2. | 6.4 MB | #2 | 12% matplotlib-base-2.2. | 6.4 MB | ###9 | 39% matplotlib-base-2.2. | 6.4 MB | ######5 | 66% matplotlib-base-2.2. | 6.4 MB | #########1 | 91% matplotlib-base-2.2. | 6.4 MB | ########## | 100% numpy-1.11.3 | 3.6 MB | | 0% numpy-1.11.3 | 3.6 MB | #8 | 18% numpy-1.11.3 | 3.6 MB | ###### | 61% numpy-1.11.3 | 3.6 MB | ########## | 100% numpy-1.11.3 | 3.6 MB | ########## | 100% matplotlib-2.2.3 | 7 KB | | 0% matplotlib-2.2.3 | 7 KB | ########## | 100% libasprintf-devel-0. | 33 KB | | 0% libasprintf-devel-0. | 33 KB | ########## | 100% libasprintf-devel-0. | 33 KB | ########## | 100% libgettextpo-devel-0 | 36 KB | | 0% libgettextpo-devel-0 | 36 KB | ########## | 100% libgettextpo-devel-0 | 36 KB | ########## | 100% zstd-1.5.6 | 542 KB | | 0% zstd-1.5.6 | 542 KB | ########## | 100% zstd-1.5.6 | 542 KB | ########## | 100% functools32-3.2.3.2 | 15 KB | | 0% functools32-3.2.3.2 | 15 KB | ########## | 100% libcblas-3.9.0 | 11 KB | | 0% libcblas-3.9.0 | 11 KB | ########## | 100% kiwisolver-1.1.0 | 88 KB | | 0% kiwisolver-1.1.0 | 88 KB | ########## | 100% libglib-2.66.3 | 3.0 MB | | 0% libglib-2.66.3 | 3.0 MB | ###4 | 34% libglib-2.66.3 | 3.0 MB | #########1 | 92% libglib-2.66.3 | 3.0 MB | ########## | 100% sip-4.18.1 | 278 KB | | 0% sip-4.18.1 | 278 KB | ########## | 100% sip-4.18.1 | 278 KB | ########## | 100% wheel-0.36.2 | 31 KB | | 0% wheel-0.36.2 | 31 KB | ########## | 100% pillow-6.2.1 | 625 KB | | 0% pillow-6.2.1 | 625 KB | ########## | 100% pillow-6.2.1 | 625 KB | ########## | 100% libopenblas-0.3.12 | 8.2 MB | | 0% libopenblas-0.3.12 | 8.2 MB | #2 | 13% libopenblas-0.3.12 | 8.2 MB | ### | 30% libopenblas-0.3.12 | 8.2 MB | #####1 | 52% libopenblas-0.3.12 | 8.2 MB | #######2 | 73% libopenblas-0.3.12 | 8.2 MB | #########3 | 94% libopenblas-0.3.12 | 8.2 MB | ########## | 100% backports.functools_ | 8 KB | | 0% backports.functools_ | 8 KB | ########## | 100% pyparsing-2.4.7 | 60 KB | | 0% pyparsing-2.4.7 | 60 KB | ########## | 100% nose-1.3.7 | 216 KB | | 0% nose-1.3.7 | 216 KB | ########## | 100% nose-1.3.7 | 216 KB | ########## | 100% Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. pip 21.0 will drop support for Python 2.7 in January 2021. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support Collecting scikit-learn==0.17.1 Using cached scikit_learn-0.17.1-cp27-cp27mu-manylinux1_x86_64.whl (17.6 MB) Installing collected packages: scikit-learn Successfully installed scikit-learn-0.17.1 DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. pip 21.0 will drop support for Python 2.7 in January 2021. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support Processing /home/biocbuild/bbs-3.19-bioc-longtests/meat/crisprScore.Rcheck/crisprScore/python/azimuth Requirement already satisfied: scipy<=1.2.1 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/azimuth_basilisk/lib/python2.7/site-packages (from Azimuth==2.0) (1.2.1) Requirement already satisfied: numpy<=1.14 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/azimuth_basilisk/lib/python2.7/site-packages (from Azimuth==2.0) (1.11.3) Requirement already satisfied: matplotlib in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/azimuth_basilisk/lib/python2.7/site-packages (from Azimuth==2.0) (2.2.3) Requirement already satisfied: nose in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/azimuth_basilisk/lib/python2.7/site-packages (from Azimuth==2.0) (1.3.7) Requirement already satisfied: scikit-learn<0.18,>=0.17.1 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/azimuth_basilisk/lib/python2.7/site-packages (from Azimuth==2.0) (0.17.1) Requirement already satisfied: pandas in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/azimuth_basilisk/lib/python2.7/site-packages (from Azimuth==2.0) (0.23.4) Requirement already satisfied: biopython<=1.76 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/azimuth_basilisk/lib/python2.7/site-packages (from Azimuth==2.0) (1.74) Requirement already satisfied: cycler>=0.10 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/azimuth_basilisk/lib/python2.7/site-packages (from matplotlib->Azimuth==2.0) (0.10.0) Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/azimuth_basilisk/lib/python2.7/site-packages (from matplotlib->Azimuth==2.0) (2.4.7) Requirement already satisfied: python-dateutil>=2.1 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/azimuth_basilisk/lib/python2.7/site-packages (from matplotlib->Azimuth==2.0) (2.8.1) Requirement already satisfied: pytz in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/azimuth_basilisk/lib/python2.7/site-packages (from matplotlib->Azimuth==2.0) (2020.1) Requirement already satisfied: six>=1.10 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/azimuth_basilisk/lib/python2.7/site-packages (from matplotlib->Azimuth==2.0) (1.15.0) Requirement already satisfied: kiwisolver>=1.0.1 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/azimuth_basilisk/lib/python2.7/site-packages (from matplotlib->Azimuth==2.0) (1.1.0) Requirement already satisfied: backports.functools_lru_cache in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/azimuth_basilisk/lib/python2.7/site-packages (from matplotlib->Azimuth==2.0) (1.6.1) Requirement already satisfied: subprocess32 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/azimuth_basilisk/lib/python2.7/site-packages (from matplotlib->Azimuth==2.0) (3.5.4) Requirement already satisfied: setuptools in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/azimuth_basilisk/lib/python2.7/site-packages (from kiwisolver>=1.0.1->matplotlib->Azimuth==2.0) (44.0.0.post20200102) Building wheels for collected packages: Azimuth Building wheel for Azimuth (setup.py): started Building wheel for Azimuth (setup.py): finished with status 'done' Created wheel for Azimuth: filename=Azimuth-2.0-py2-none-any.whl size=163884 sha256=730e8e037fc220d124121b7d8447856e9f8ec990135da592235d44cebcd407e0 Stored in directory: /tmp/pip-ephem-wheel-cache-9CrYnK/wheels/4b/7d/4c/495b40dc8d98aa4c4eb18d19e9c9ada022bed6d3fadf6b1e79 Successfully built Azimuth Installing collected packages: Azimuth Successfully installed Azimuth-2.0 Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deepcpf1_basilisk added / updated specs: - python=2.7 The following NEW packages will be INSTALLED: _libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge _openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu ca-certificates conda-forge/linux-64::ca-certificates-2024.2.2-hbcca054_0 certifi conda-forge/linux-64::certifi-2019.11.28-py27h8c360ce_1 ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.40-h55db66e_0 libffi conda-forge/linux-64::libffi-3.2.1-he1b5a44_1007 libgcc-ng conda-forge/linux-64::libgcc-ng-13.2.0-h77fa898_6 libgomp conda-forge/linux-64::libgomp-13.2.0-h77fa898_6 libsqlite conda-forge/linux-64::libsqlite-3.45.3-h2797004_0 libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-13.2.0-hc0a3c3a_6 libzlib conda-forge/linux-64::libzlib-1.2.13-hd590300_5 ncurses conda-forge/linux-64::ncurses-6.4.20240210-h59595ed_0 openssl conda-forge/linux-64::openssl-1.1.1w-hd590300_0 pip conda-forge/noarch::pip-20.1.1-pyh9f0ad1d_0 python conda-forge/linux-64::python-2.7.15-h5a48372_1011_cpython python_abi conda-forge/linux-64::python_abi-2.7-1_cp27mu readline conda-forge/linux-64::readline-8.2-h8228510_1 setuptools conda-forge/linux-64::setuptools-44.0.0-py27_0 sqlite conda-forge/linux-64::sqlite-3.45.3-h2c6b66d_0 tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101 wheel conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0 zlib conda-forge/linux-64::zlib-1.2.13-hd590300_5 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.12.0 latest version: 24.4.0 Please update conda by running $ conda update -n base -c defaults conda # All requested packages already installed. Collecting package metadata (current_repodata.json): ...working... WARNING conda.models.version:get_matcher(535): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.7.1.*, but conda is ignoring the .* and treating it as 1.7.1 done Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve. Collecting package metadata (repodata.json): ...working... WARNING conda.models.version:get_matcher(535): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.8.0.*, but conda is ignoring the .* and treating it as 1.8.0 WARNING conda.models.version:get_matcher(535): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.9.0.*, but conda is ignoring the .* and treating it as 1.9.0 WARNING conda.models.version:get_matcher(535): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.6.0.*, but conda is ignoring the .* and treating it as 1.6.0 done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.12.0 latest version: 24.4.0 Please update conda by running $ conda update -n base -c defaults conda ## Package Plan ## environment location: /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deepcpf1_basilisk added / updated specs: - funcsigs=1.0.2 - h5py=2.10.0 - keras=2.1.5 - linecache2=1.0.0 - mako=1.1.4 - markupsafe=1.1.1 - mock=3.0.5 - numpy=1.16.5 - pip=20.1.1 - protobuf=3.11.4 - pygpu=0.7.6 - python[version='2.7.*,2.7.*'] - pyyaml=5.3.1 - scipy=1.2.1 - setuptools=44.0.0 - six=1.15.0 - tensorflow=1.0.0 - theano=1.0.1 - traceback2=1.4.0 - unittest2=1.1.0 - wheel=0.36.2 The following packages will be downloaded: package | build ---------------------------|----------------- funcsigs-1.0.2 | py_3 14 KB conda-forge h5py-2.10.0 |nompi_py27h513d04c_102 1.1 MB conda-forge hdf5-1.10.5 |nompi_h3c11f04_1104 3.1 MB conda-forge keras-2.1.5 | py27_0 491 KB conda-forge libgpuarray-0.7.6 | h7f98852_1003 245 KB conda-forge libprotobuf-3.11.4 | h8b12597_0 4.8 MB conda-forge linecache2-1.0.0 | py_1 13 KB conda-forge mako-1.1.4 | pyh44b312d_0 58 KB conda-forge markupsafe-1.1.1 | py27hdf8410d_1 26 KB conda-forge mock-3.0.5 | py27h8c360ce_1 44 KB conda-forge numpy-1.16.5 | py27h95a1406_0 4.3 MB conda-forge protobuf-3.11.4 | py27he1b5a44_0 696 KB conda-forge pygpu-0.7.6 |py27hc1659b7_1000 667 KB conda-forge pyyaml-5.3.1 | py27hdf8410d_0 174 KB conda-forge scipy-1.2.1 | py27h921218d_2 18.4 MB conda-forge tensorflow-1.0.0 | py27_0 34.9 MB conda-forge theano-1.0.1 | py27_1 3.6 MB conda-forge traceback2-1.4.0 | py27_0 28 KB conda-forge unittest2-1.1.0 | py_0 68 KB conda-forge ------------------------------------------------------------ Total: 72.7 MB The following NEW packages will be INSTALLED: funcsigs conda-forge/noarch::funcsigs-1.0.2-py_3 h5py conda-forge/linux-64::h5py-2.10.0-nompi_py27h513d04c_102 hdf5 conda-forge/linux-64::hdf5-1.10.5-nompi_h3c11f04_1104 keras conda-forge/linux-64::keras-2.1.5-py27_0 libblas conda-forge/linux-64::libblas-3.9.0-8_openblas libcblas conda-forge/linux-64::libcblas-3.9.0-8_openblas libgfortran-ng conda-forge/linux-64::libgfortran-ng-7.5.0-h14aa051_20 libgfortran4 conda-forge/linux-64::libgfortran4-7.5.0-h14aa051_20 libgpuarray conda-forge/linux-64::libgpuarray-0.7.6-h7f98852_1003 liblapack conda-forge/linux-64::liblapack-3.9.0-8_openblas libopenblas conda-forge/linux-64::libopenblas-0.3.12-pthreads_hb3c22a3_1 libprotobuf conda-forge/linux-64::libprotobuf-3.11.4-h8b12597_0 linecache2 conda-forge/noarch::linecache2-1.0.0-py_1 mako conda-forge/noarch::mako-1.1.4-pyh44b312d_0 markupsafe conda-forge/linux-64::markupsafe-1.1.1-py27hdf8410d_1 mock conda-forge/linux-64::mock-3.0.5-py27h8c360ce_1 numpy conda-forge/linux-64::numpy-1.16.5-py27h95a1406_0 protobuf conda-forge/linux-64::protobuf-3.11.4-py27he1b5a44_0 pygpu conda-forge/linux-64::pygpu-0.7.6-py27hc1659b7_1000 pyyaml conda-forge/linux-64::pyyaml-5.3.1-py27hdf8410d_0 scipy conda-forge/linux-64::scipy-1.2.1-py27h921218d_2 six conda-forge/noarch::six-1.15.0-pyh9f0ad1d_0 tensorflow conda-forge/linux-64::tensorflow-1.0.0-py27_0 theano conda-forge/linux-64::theano-1.0.1-py27_1 traceback2 conda-forge/linux-64::traceback2-1.4.0-py27_0 unittest2 conda-forge/noarch::unittest2-1.1.0-py_0 yaml conda-forge/linux-64::yaml-0.2.5-h7f98852_2 The following packages will be DOWNGRADED: wheel 0.37.1-pyhd8ed1ab_0 --> 0.36.2-pyhd3deb0d_0 Downloading and Extracting Packages libgpuarray-0.7.6 | 245 KB | | 0% libgpuarray-0.7.6 | 245 KB | 6 | 7% libgpuarray-0.7.6 | 245 KB | ########## | 100% libgpuarray-0.7.6 | 245 KB | ########## | 100% keras-2.1.5 | 491 KB | | 0% keras-2.1.5 | 491 KB | 3 | 3% keras-2.1.5 | 491 KB | ########## | 100% keras-2.1.5 | 491 KB | ########## | 100% scipy-1.2.1 | 18.4 MB | | 0% scipy-1.2.1 | 18.4 MB | 4 | 5% scipy-1.2.1 | 18.4 MB | #4 | 14% scipy-1.2.1 | 18.4 MB | ##3 | 23% scipy-1.2.1 | 18.4 MB | ###2 | 32% scipy-1.2.1 | 18.4 MB | ####1 | 41% scipy-1.2.1 | 18.4 MB | ##### | 50% scipy-1.2.1 | 18.4 MB | #####9 | 59% scipy-1.2.1 | 18.4 MB | ######8 | 68% scipy-1.2.1 | 18.4 MB | #######7 | 77% scipy-1.2.1 | 18.4 MB | ########6 | 86% scipy-1.2.1 | 18.4 MB | #########5 | 95% scipy-1.2.1 | 18.4 MB | ########## | 100% theano-1.0.1 | 3.6 MB | | 0% theano-1.0.1 | 3.6 MB | #6 | 17% theano-1.0.1 | 3.6 MB | ######3 | 63% theano-1.0.1 | 3.6 MB | ########## | 100% theano-1.0.1 | 3.6 MB | ########## | 100% mock-3.0.5 | 44 KB | | 0% mock-3.0.5 | 44 KB | ########## | 100% funcsigs-1.0.2 | 14 KB | | 0% funcsigs-1.0.2 | 14 KB | ########## | 100% h5py-2.10.0 | 1.1 MB | | 0% h5py-2.10.0 | 1.1 MB | ######## | 80% h5py-2.10.0 | 1.1 MB | ########## | 100% hdf5-1.10.5 | 3.1 MB | | 0% hdf5-1.10.5 | 3.1 MB | ##2 | 22% hdf5-1.10.5 | 3.1 MB | #######7 | 77% hdf5-1.10.5 | 3.1 MB | ########## | 100% libprotobuf-3.11.4 | 4.8 MB | | 0% libprotobuf-3.11.4 | 4.8 MB | 6 | 6% libprotobuf-3.11.4 | 4.8 MB | #### | 40% libprotobuf-3.11.4 | 4.8 MB | #######4 | 75% libprotobuf-3.11.4 | 4.8 MB | ########## | 100% mako-1.1.4 | 58 KB | | 0% mako-1.1.4 | 58 KB | ########## | 100% pygpu-0.7.6 | 667 KB | | 0% pygpu-0.7.6 | 667 KB | 7 | 7% pygpu-0.7.6 | 667 KB | ########## | 100% pygpu-0.7.6 | 667 KB | ########## | 100% protobuf-3.11.4 | 696 KB | | 0% protobuf-3.11.4 | 696 KB | #########4 | 94% protobuf-3.11.4 | 696 KB | ########## | 100% pyyaml-5.3.1 | 174 KB | | 0% pyyaml-5.3.1 | 174 KB | ########## | 100% pyyaml-5.3.1 | 174 KB | ########## | 100% unittest2-1.1.0 | 68 KB | | 0% unittest2-1.1.0 | 68 KB | ########## | 100% traceback2-1.4.0 | 28 KB | | 0% traceback2-1.4.0 | 28 KB | ########## | 100% markupsafe-1.1.1 | 26 KB | | 0% markupsafe-1.1.1 | 26 KB | ########## | 100% numpy-1.16.5 | 4.3 MB | | 0% numpy-1.16.5 | 4.3 MB | #3 | 14% numpy-1.16.5 | 4.3 MB | ####6 | 47% numpy-1.16.5 | 4.3 MB | ########4 | 85% numpy-1.16.5 | 4.3 MB | ########## | 100% tensorflow-1.0.0 | 34.9 MB | | 0% tensorflow-1.0.0 | 34.9 MB | 2 | 2% tensorflow-1.0.0 | 34.9 MB | 6 | 6% tensorflow-1.0.0 | 34.9 MB | #1 | 11% tensorflow-1.0.0 | 34.9 MB | #5 | 16% tensorflow-1.0.0 | 34.9 MB | ## | 21% tensorflow-1.0.0 | 34.9 MB | ##5 | 26% tensorflow-1.0.0 | 34.9 MB | ### | 30% tensorflow-1.0.0 | 34.9 MB | ###4 | 35% tensorflow-1.0.0 | 34.9 MB | ###9 | 39% tensorflow-1.0.0 | 34.9 MB | ####4 | 44% tensorflow-1.0.0 | 34.9 MB | ####8 | 49% tensorflow-1.0.0 | 34.9 MB | #####3 | 54% tensorflow-1.0.0 | 34.9 MB | #####8 | 58% tensorflow-1.0.0 | 34.9 MB | ######3 | 63% tensorflow-1.0.0 | 34.9 MB | ######8 | 68% tensorflow-1.0.0 | 34.9 MB | #######3 | 73% tensorflow-1.0.0 | 34.9 MB | #######7 | 78% tensorflow-1.0.0 | 34.9 MB | ########2 | 83% tensorflow-1.0.0 | 34.9 MB | ########7 | 87% tensorflow-1.0.0 | 34.9 MB | #########2 | 92% tensorflow-1.0.0 | 34.9 MB | #########7 | 97% tensorflow-1.0.0 | 34.9 MB | ########## | 100% linecache2-1.0.0 | 13 KB | | 0% linecache2-1.0.0 | 13 KB | ########## | 100% Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. pip 21.0 will drop support for Python 2.7 in January 2021. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support Processing /home/biocbuild/bbs-3.19-bioc-longtests/meat/crisprScore.Rcheck/crisprScore/python/deepcpf1 Building wheels for collected packages: DeepCpf1 Building wheel for DeepCpf1 (setup.py): started Building wheel for DeepCpf1 (setup.py): finished with status 'done' Created wheel for DeepCpf1: filename=DeepCpf1-1.0-py2-none-any.whl size=768630 sha256=c19efaab64b94900936d5648150e2c91fc3f2f5ae378c7f5f288c54e3587cad3 Stored in directory: /tmp/pip-ephem-wheel-cache-8Tm4CZ/wheels/65/b1/4b/cfd3b913badad8733ef54befa5b6899126bac937eee2270b91 Successfully built DeepCpf1 Installing collected packages: DeepCpf1 Successfully installed DeepCpf1-1.0 Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk added / updated specs: - python=3.6 The following packages will be downloaded: package | build ---------------------------|----------------- certifi-2016.9.26 | py36_0 217 KB conda-forge pip-20.0.2 | py36_1 1.9 MB conda-forge python-3.6.15 |hb7a2778_0_cpython 38.4 MB conda-forge python_abi-3.6 | 2_cp36m 4 KB conda-forge setuptools-49.6.0 | py36h5fab9bb_3 936 KB conda-forge wheel-0.34.2 | py36_0 43 KB conda-forge ------------------------------------------------------------ Total: 41.5 MB The following NEW packages will be INSTALLED: _libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge _openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu ca-certificates conda-forge/linux-64::ca-certificates-2024.2.2-hbcca054_0 certifi conda-forge/linux-64::certifi-2016.9.26-py36_0 ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.40-h55db66e_0 libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5 libgcc-ng conda-forge/linux-64::libgcc-ng-13.2.0-h77fa898_6 libgomp conda-forge/linux-64::libgomp-13.2.0-h77fa898_6 libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0 libsqlite conda-forge/linux-64::libsqlite-3.45.3-h2797004_0 libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-13.2.0-hc0a3c3a_6 libzlib conda-forge/linux-64::libzlib-1.2.13-hd590300_5 ncurses conda-forge/linux-64::ncurses-6.4.20240210-h59595ed_0 openssl conda-forge/linux-64::openssl-1.1.1w-hd590300_0 pip conda-forge/linux-64::pip-20.0.2-py36_1 python conda-forge/linux-64::python-3.6.15-hb7a2778_0_cpython python_abi conda-forge/linux-64::python_abi-3.6-2_cp36m readline conda-forge/linux-64::readline-8.2-h8228510_1 setuptools conda-forge/linux-64::setuptools-49.6.0-py36h5fab9bb_3 sqlite conda-forge/linux-64::sqlite-3.45.3-h2c6b66d_0 tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101 wheel conda-forge/linux-64::wheel-0.34.2-py36_0 xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.12.0 latest version: 24.4.0 Please update conda by running $ conda update -n base -c defaults conda # All requested packages already installed. Collecting package metadata (current_repodata.json): ...working... WARNING conda.models.version:get_matcher(535): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.7.1.*, but conda is ignoring the .* and treating it as 1.7.1 done Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve. Collecting package metadata (repodata.json): ...working... WARNING conda.models.version:get_matcher(535): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.8.0.*, but conda is ignoring the .* and treating it as 1.8.0 WARNING conda.models.version:get_matcher(535): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.9.0.*, but conda is ignoring the .* and treating it as 1.9.0 WARNING conda.models.version:get_matcher(535): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.6.0.*, but conda is ignoring the .* and treating it as 1.6.0 done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.12.0 latest version: 24.4.0 Please update conda by running $ conda update -n base -c defaults conda ## Package Plan ## environment location: /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk added / updated specs: - absl-py=0.12.0 - astunparse=1.6.3 - biopython=1.78 - cachetools=4.2.1 - certifi=2020.12.5 - chardet=4.0.0 - flatbuffers=1.12 - gast=0.3.3 - google-auth-oauthlib=0.4.3 - google-auth=1.27.1 - google-pasta=0.2.0 - grpcio=1.32.0 - h5py=2.10.0 - idna=2.10 - importlib-metadata=3.7.2 - joblib=1.0.1 - keras-preprocessing=1.1.2 - markdown=3.3.4 - numpy=1.19.5 - oauthlib=3.1.0 - pandas=1.1.5 - pip=21.0.1 - protobuf=3.15.5 - pyasn1-modules=0.2.8 - pyasn1=0.4.8 - python-dateutil=2.8.1 - python[version='3.6.*,3.6.*'] - pytz=2021.1 - requests-oauthlib=1.3.0 - requests=2.25.1 - rsa=4.7.2 - scikit-learn=0.21.2 - scipy=1.5.3 - setuptools=49.6.0 - six=1.15.0 - termcolor=1.1.0 - typing-extensions=3.7.4.3 - urllib3=1.26.3 - werkzeug=1.0.1 - wheel=0.36.2 - wrapt=1.12.1 - zipp=3.4.1 The following packages will be downloaded: package | build ---------------------------|----------------- absl-py-0.12.0 | pyhd8ed1ab_0 96 KB conda-forge aiohttp-3.7.4.post0 | py36h8f6f2f9_0 622 KB conda-forge async-timeout-3.0.1 | py_1000 11 KB conda-forge biopython-1.78 | py36h8f6f2f9_2 2.7 MB conda-forge blinker-1.5 | pyhd8ed1ab_0 15 KB conda-forge brotlipy-0.7.0 |py36h8f6f2f9_1001 341 KB conda-forge cachetools-4.2.1 | pyhd8ed1ab_0 13 KB conda-forge certifi-2020.12.5 | py36h5fab9bb_1 143 KB conda-forge cffi-1.14.6 | py36hd8eec40_1 224 KB conda-forge chardet-4.0.0 | py36h5fab9bb_1 219 KB conda-forge click-8.0.1 | py36h5fab9bb_0 145 KB conda-forge cryptography-35.0.0 | py36hb60f036_0 1.5 MB conda-forge flatbuffers-1.12.1 | h9c3ff4c_0 1.2 MB conda-forge gast-0.3.3 | py_0 12 KB conda-forge google-auth-1.27.1 | pyhd3eb1b0_0 72 KB google-auth-oauthlib-0.4.3 | pyhd8ed1ab_0 19 KB conda-forge grpcio-1.32.0 | py36he0f7d3b_0 1.8 MB conda-forge h5py-2.10.0 |nompi_py36h4510012_106 1.1 MB conda-forge idna_ssl-1.1.0 | pyhd8ed1ab_1002 7 KB conda-forge importlib-metadata-3.7.2 | py36h5fab9bb_0 24 KB conda-forge joblib-1.0.1 | pyhd8ed1ab_0 206 KB conda-forge libprotobuf-3.15.5 | h780b84a_0 2.5 MB conda-forge markdown-3.3.4 | pyhd8ed1ab_0 67 KB conda-forge multidict-5.2.0 | py36h8f6f2f9_0 62 KB conda-forge numpy-1.19.5 | py36hfc0c790_2 5.3 MB conda-forge oauthlib-3.1.0 | pyhd8ed1ab_0 86 KB conda-forge pandas-1.1.5 | py36h284efc9_0 11.3 MB conda-forge pip-21.0.1 | pyhd8ed1ab_0 1.1 MB conda-forge protobuf-3.15.5 | py36hc4f0c31_0 333 KB conda-forge pyasn1-modules-0.2.8 | py_0 72 KB pyjwt-2.8.0 | pyhd8ed1ab_0 24 KB conda-forge pyopenssl-22.0.0 | pyhd8ed1ab_1 120 KB conda-forge pysocks-1.7.1 | py36h5fab9bb_3 27 KB conda-forge pytz-2021.1 | pyhd8ed1ab_0 239 KB conda-forge requests-2.25.1 | pyhd3deb0d_0 51 KB conda-forge requests-oauthlib-1.3.0 | pyh9f0ad1d_0 21 KB conda-forge rsa-4.7.2 | pyh44b312d_0 28 KB conda-forge scikit-learn-0.21.2 | py36hcdab131_1 6.7 MB conda-forge scipy-1.5.3 | py36h81d768a_1 19.1 MB conda-forge termcolor-1.1.0 | pyhd8ed1ab_3 8 KB conda-forge typing-extensions-3.7.4.3 | 0 8 KB conda-forge typing_extensions-3.7.4.3 | py_0 25 KB conda-forge urllib3-1.26.3 | pyhd8ed1ab_0 99 KB conda-forge werkzeug-1.0.1 | pyh9f0ad1d_0 239 KB conda-forge wrapt-1.12.1 | py36h8f6f2f9_3 47 KB conda-forge yarl-1.6.3 | py36h8f6f2f9_2 142 KB conda-forge zipp-3.4.1 | pyhd8ed1ab_0 11 KB conda-forge ------------------------------------------------------------ Total: 58.0 MB The following NEW packages will be INSTALLED: absl-py conda-forge/noarch::absl-py-0.12.0-pyhd8ed1ab_0 aiohttp conda-forge/linux-64::aiohttp-3.7.4.post0-py36h8f6f2f9_0 astunparse conda-forge/noarch::astunparse-1.6.3-pyhd8ed1ab_0 async-timeout conda-forge/noarch::async-timeout-3.0.1-py_1000 attrs conda-forge/noarch::attrs-22.2.0-pyh71513ae_0 biopython conda-forge/linux-64::biopython-1.78-py36h8f6f2f9_2 blinker conda-forge/noarch::blinker-1.5-pyhd8ed1ab_0 brotlipy conda-forge/linux-64::brotlipy-0.7.0-py36h8f6f2f9_1001 c-ares conda-forge/linux-64::c-ares-1.28.1-hd590300_0 cachetools conda-forge/noarch::cachetools-4.2.1-pyhd8ed1ab_0 cffi conda-forge/linux-64::cffi-1.14.6-py36hd8eec40_1 chardet conda-forge/linux-64::chardet-4.0.0-py36h5fab9bb_1 click conda-forge/linux-64::click-8.0.1-py36h5fab9bb_0 cryptography conda-forge/linux-64::cryptography-35.0.0-py36hb60f036_0 flatbuffers conda-forge/linux-64::flatbuffers-1.12.1-h9c3ff4c_0 gast conda-forge/noarch::gast-0.3.3-py_0 google-auth pkgs/main/noarch::google-auth-1.27.1-pyhd3eb1b0_0 google-auth-oauth~ conda-forge/noarch::google-auth-oauthlib-0.4.3-pyhd8ed1ab_0 google-pasta conda-forge/noarch::google-pasta-0.2.0-pyh8c360ce_0 grpcio conda-forge/linux-64::grpcio-1.32.0-py36he0f7d3b_0 h5py conda-forge/linux-64::h5py-2.10.0-nompi_py36h4510012_106 hdf5 conda-forge/linux-64::hdf5-1.10.6-nompi_h6a2412b_1114 idna conda-forge/noarch::idna-2.10-pyh9f0ad1d_0 idna_ssl conda-forge/noarch::idna_ssl-1.1.0-pyhd8ed1ab_1002 importlib-metadata conda-forge/linux-64::importlib-metadata-3.7.2-py36h5fab9bb_0 joblib conda-forge/noarch::joblib-1.0.1-pyhd8ed1ab_0 keras-preprocessi~ conda-forge/noarch::keras-preprocessing-1.1.2-pyhd8ed1ab_0 keyutils conda-forge/linux-64::keyutils-1.6.1-h166bdaf_0 krb5 conda-forge/linux-64::krb5-1.20.1-hf9c8cef_0 libblas conda-forge/linux-64::libblas-3.9.0-20_linux64_openblas libcblas conda-forge/linux-64::libcblas-3.9.0-20_linux64_openblas libcurl conda-forge/linux-64::libcurl-7.87.0-h6312ad2_0 libedit conda-forge/linux-64::libedit-3.1.20191231-he28a2e2_2 libev conda-forge/linux-64::libev-4.33-hd590300_2 libgfortran-ng conda-forge/linux-64::libgfortran-ng-13.2.0-h69a702a_6 libgfortran5 conda-forge/linux-64::libgfortran5-13.2.0-h43f5ff8_6 liblapack conda-forge/linux-64::liblapack-3.9.0-20_linux64_openblas libnghttp2 conda-forge/linux-64::libnghttp2-1.51.0-hdcd2b5c_0 libopenblas conda-forge/linux-64::libopenblas-0.3.25-pthreads_h413a1c8_0 libprotobuf conda-forge/linux-64::libprotobuf-3.15.5-h780b84a_0 libssh2 conda-forge/linux-64::libssh2-1.10.0-haa6b8db_3 markdown conda-forge/noarch::markdown-3.3.4-pyhd8ed1ab_0 multidict conda-forge/linux-64::multidict-5.2.0-py36h8f6f2f9_0 numpy conda-forge/linux-64::numpy-1.19.5-py36hfc0c790_2 oauthlib conda-forge/noarch::oauthlib-3.1.0-pyhd8ed1ab_0 pandas conda-forge/linux-64::pandas-1.1.5-py36h284efc9_0 protobuf conda-forge/linux-64::protobuf-3.15.5-py36hc4f0c31_0 pyasn1 conda-forge/noarch::pyasn1-0.4.8-py_0 pyasn1-modules pkgs/main/noarch::pyasn1-modules-0.2.8-py_0 pycparser conda-forge/noarch::pycparser-2.21-pyhd8ed1ab_0 pyjwt conda-forge/noarch::pyjwt-2.8.0-pyhd8ed1ab_0 pyopenssl conda-forge/noarch::pyopenssl-22.0.0-pyhd8ed1ab_1 pysocks conda-forge/linux-64::pysocks-1.7.1-py36h5fab9bb_3 python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0 pytz conda-forge/noarch::pytz-2021.1-pyhd8ed1ab_0 requests conda-forge/noarch::requests-2.25.1-pyhd3deb0d_0 requests-oauthlib conda-forge/noarch::requests-oauthlib-1.3.0-pyh9f0ad1d_0 rsa conda-forge/noarch::rsa-4.7.2-pyh44b312d_0 scikit-learn conda-forge/linux-64::scikit-learn-0.21.2-py36hcdab131_1 scipy conda-forge/linux-64::scipy-1.5.3-py36h81d768a_1 six conda-forge/noarch::six-1.15.0-pyh9f0ad1d_0 termcolor conda-forge/noarch::termcolor-1.1.0-pyhd8ed1ab_3 typing-extensions conda-forge/noarch::typing-extensions-3.7.4.3-0 typing_extensions conda-forge/noarch::typing_extensions-3.7.4.3-py_0 urllib3 conda-forge/noarch::urllib3-1.26.3-pyhd8ed1ab_0 werkzeug conda-forge/noarch::werkzeug-1.0.1-pyh9f0ad1d_0 wrapt conda-forge/linux-64::wrapt-1.12.1-py36h8f6f2f9_3 yarl conda-forge/linux-64::yarl-1.6.3-py36h8f6f2f9_2 zipp conda-forge/noarch::zipp-3.4.1-pyhd8ed1ab_0 zlib conda-forge/linux-64::zlib-1.2.13-hd590300_5 The following packages will be UPDATED: certifi 2016.9.26-py36_0 --> 2020.12.5-py36h5fab9bb_1 pip conda-forge/linux-64::pip-20.0.2-py36~ --> conda-forge/noarch::pip-21.0.1-pyhd8ed1ab_0 wheel conda-forge/linux-64::wheel-0.34.2-py~ --> conda-forge/noarch::wheel-0.36.2-pyhd3deb0d_0 Downloading and Extracting Packages multidict-5.2.0 | 62 KB | | 0% multidict-5.2.0 | 62 KB | ##5 | 26% multidict-5.2.0 | 62 KB | ########## | 100% pandas-1.1.5 | 11.3 MB | | 0% pandas-1.1.5 | 11.3 MB | | 1% pandas-1.1.5 | 11.3 MB | # | 11% pandas-1.1.5 | 11.3 MB | ##6 | 26% pandas-1.1.5 | 11.3 MB | #### | 41% pandas-1.1.5 | 11.3 MB | #####7 | 57% pandas-1.1.5 | 11.3 MB | #######3 | 73% pandas-1.1.5 | 11.3 MB | ########8 | 89% pandas-1.1.5 | 11.3 MB | ########## | 100% idna_ssl-1.1.0 | 7 KB | | 0% idna_ssl-1.1.0 | 7 KB | ########## | 100% urllib3-1.26.3 | 99 KB | | 0% urllib3-1.26.3 | 99 KB | ########## | 100% google-auth-1.27.1 | 72 KB | | 0% google-auth-1.27.1 | 72 KB | ####4 | 44% google-auth-1.27.1 | 72 KB | ########## | 100% google-auth-1.27.1 | 72 KB | ########## | 100% werkzeug-1.0.1 | 239 KB | | 0% werkzeug-1.0.1 | 239 KB | ########## | 100% werkzeug-1.0.1 | 239 KB | ########## | 100% gast-0.3.3 | 12 KB | | 0% gast-0.3.3 | 12 KB | ########## | 100% biopython-1.78 | 2.7 MB | | 0% biopython-1.78 | 2.7 MB | ##2 | 22% biopython-1.78 | 2.7 MB | #########1 | 92% biopython-1.78 | 2.7 MB | ########## | 100% cachetools-4.2.1 | 13 KB | | 0% cachetools-4.2.1 | 13 KB | ########## | 100% cffi-1.14.6 | 224 KB | | 0% cffi-1.14.6 | 224 KB | ########## | 100% h5py-2.10.0 | 1.1 MB | | 0% h5py-2.10.0 | 1.1 MB | #####6 | 56% h5py-2.10.0 | 1.1 MB | ########## | 100% aiohttp-3.7.4.post0 | 622 KB | | 0% aiohttp-3.7.4.post0 | 622 KB | ########## | 100% aiohttp-3.7.4.post0 | 622 KB | ########## | 100% typing-extensions-3. | 8 KB | | 0% typing-extensions-3. | 8 KB | ########## | 100% libprotobuf-3.15.5 | 2.5 MB | | 0% libprotobuf-3.15.5 | 2.5 MB | ##9 | 29% libprotobuf-3.15.5 | 2.5 MB | ########## | 100% libprotobuf-3.15.5 | 2.5 MB | ########## | 100% grpcio-1.32.0 | 1.8 MB | | 0% grpcio-1.32.0 | 1.8 MB | | 1% grpcio-1.32.0 | 1.8 MB | #########7 | 98% grpcio-1.32.0 | 1.8 MB | ########## | 100% oauthlib-3.1.0 | 86 KB | | 0% oauthlib-3.1.0 | 86 KB | ########## | 100% cryptography-35.0.0 | 1.5 MB | | 0% cryptography-35.0.0 | 1.5 MB | ######5 | 66% cryptography-35.0.0 | 1.5 MB | ########## | 100% joblib-1.0.1 | 206 KB | | 0% joblib-1.0.1 | 206 KB | ########## | 100% joblib-1.0.1 | 206 KB | ########## | 100% protobuf-3.15.5 | 333 KB | | 0% protobuf-3.15.5 | 333 KB | ########## | 100% protobuf-3.15.5 | 333 KB | ########## | 100% requests-oauthlib-1. | 21 KB | | 0% requests-oauthlib-1. | 21 KB | ########## | 100% requests-oauthlib-1. | 21 KB | ########## | 100% typing_extensions-3. | 25 KB | | 0% typing_extensions-3. | 25 KB | ########## | 100% requests-2.25.1 | 51 KB | | 0% requests-2.25.1 | 51 KB | ########## | 100% termcolor-1.1.0 | 8 KB | | 0% termcolor-1.1.0 | 8 KB | ########## | 100% brotlipy-0.7.0 | 341 KB | | 0% brotlipy-0.7.0 | 341 KB | ########## | 100% brotlipy-0.7.0 | 341 KB | ########## | 100% pytz-2021.1 | 239 KB | | 0% pytz-2021.1 | 239 KB | ########## | 100% pytz-2021.1 | 239 KB | ########## | 100% pysocks-1.7.1 | 27 KB | | 0% pysocks-1.7.1 | 27 KB | ########## | 100% importlib-metadata-3 | 24 KB | | 0% importlib-metadata-3 | 24 KB | ########## | 100% google-auth-oauthlib | 19 KB | | 0% google-auth-oauthlib | 19 KB | ########## | 100% rsa-4.7.2 | 28 KB | | 0% rsa-4.7.2 | 28 KB | ########## | 100% click-8.0.1 | 145 KB | | 0% click-8.0.1 | 145 KB | ########## | 100% click-8.0.1 | 145 KB | ########## | 100% pip-21.0.1 | 1.1 MB | | 0% pip-21.0.1 | 1.1 MB | ########## | 100% pip-21.0.1 | 1.1 MB | ########## | 100% pyjwt-2.8.0 | 24 KB | | 0% pyjwt-2.8.0 | 24 KB | ########## | 100% pyjwt-2.8.0 | 24 KB | ########## | 100% scipy-1.5.3 | 19.1 MB | | 0% scipy-1.5.3 | 19.1 MB | 4 | 4% scipy-1.5.3 | 19.1 MB | #3 | 14% scipy-1.5.3 | 19.1 MB | ##2 | 23% scipy-1.5.3 | 19.1 MB | ### | 31% scipy-1.5.3 | 19.1 MB | ###9 | 40% scipy-1.5.3 | 19.1 MB | ####8 | 48% scipy-1.5.3 | 19.1 MB | #####7 | 57% scipy-1.5.3 | 19.1 MB | ######6 | 66% scipy-1.5.3 | 19.1 MB | #######5 | 75% scipy-1.5.3 | 19.1 MB | ########3 | 84% scipy-1.5.3 | 19.1 MB | #########3 | 93% scipy-1.5.3 | 19.1 MB | ########## | 100% blinker-1.5 | 15 KB | | 0% blinker-1.5 | 15 KB | ########## | 100% async-timeout-3.0.1 | 11 KB | | 0% async-timeout-3.0.1 | 11 KB | ########## | 100% absl-py-0.12.0 | 96 KB | | 0% absl-py-0.12.0 | 96 KB | ########## | 100% certifi-2020.12.5 | 143 KB | | 0% certifi-2020.12.5 | 143 KB | ########## | 100% certifi-2020.12.5 | 143 KB | ########## | 100% wrapt-1.12.1 | 47 KB | | 0% wrapt-1.12.1 | 47 KB | ########## | 100% pyopenssl-22.0.0 | 120 KB | | 0% pyopenssl-22.0.0 | 120 KB | ########## | 100% chardet-4.0.0 | 219 KB | | 0% chardet-4.0.0 | 219 KB | ########## | 100% chardet-4.0.0 | 219 KB | ########## | 100% scikit-learn-0.21.2 | 6.7 MB | | 0% scikit-learn-0.21.2 | 6.7 MB | #1 | 11% scikit-learn-0.21.2 | 6.7 MB | ###6 | 36% scikit-learn-0.21.2 | 6.7 MB | ######3 | 64% scikit-learn-0.21.2 | 6.7 MB | ######### | 91% scikit-learn-0.21.2 | 6.7 MB | ########## | 100% zipp-3.4.1 | 11 KB | | 0% zipp-3.4.1 | 11 KB | ########## | 100% numpy-1.19.5 | 5.3 MB | | 0% numpy-1.19.5 | 5.3 MB | #6 | 16% numpy-1.19.5 | 5.3 MB | ####9 | 50% numpy-1.19.5 | 5.3 MB | ########1 | 81% numpy-1.19.5 | 5.3 MB | ########## | 100% pyasn1-modules-0.2.8 | 72 KB | | 0% pyasn1-modules-0.2.8 | 72 KB | ########## | 100% pyasn1-modules-0.2.8 | 72 KB | ########## | 100% markdown-3.3.4 | 67 KB | | 0% markdown-3.3.4 | 67 KB | ########## | 100% flatbuffers-1.12.1 | 1.2 MB | | 0% flatbuffers-1.12.1 | 1.2 MB | ####8 | 49% flatbuffers-1.12.1 | 1.2 MB | ########## | 100% flatbuffers-1.12.1 | 1.2 MB | ########## | 100% yarl-1.6.3 | 142 KB | | 0% yarl-1.6.3 | 142 KB | ########## | 100% Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Collecting tensorflow==2.4.1 Using cached tensorflow-2.4.1-cp36-cp36m-manylinux2010_x86_64.whl (394.3 MB) Requirement already satisfied: six~=1.15.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow==2.4.1) (1.15.0) Requirement already satisfied: absl-py~=0.10 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow==2.4.1) (0.12.0) Requirement already satisfied: gast==0.3.3 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow==2.4.1) (0.3.3) Requirement already satisfied: protobuf>=3.9.2 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow==2.4.1) (3.15.5) Requirement already satisfied: grpcio~=1.32.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow==2.4.1) (1.32.0) Collecting opt-einsum~=3.3.0 Using cached opt_einsum-3.3.0-py3-none-any.whl (65 kB) Requirement already satisfied: typing-extensions~=3.7.4 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow==2.4.1) (3.7.4.3) Requirement already satisfied: keras-preprocessing~=1.1.2 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow==2.4.1) (1.1.2) Requirement already satisfied: h5py~=2.10.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow==2.4.1) (2.10.0) Requirement already satisfied: numpy~=1.19.2 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow==2.4.1) (1.19.5) Collecting flatbuffers~=1.12.0 Using cached flatbuffers-1.12-py2.py3-none-any.whl (15 kB) Requirement already satisfied: termcolor~=1.1.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow==2.4.1) (1.1.0) Requirement already satisfied: wheel~=0.35 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow==2.4.1) (0.36.2) Requirement already satisfied: wrapt~=1.12.1 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow==2.4.1) (1.12.1) Collecting tensorboard~=2.4 Using cached tensorboard-2.10.1-py3-none-any.whl (5.9 MB) Requirement already satisfied: astunparse~=1.6.3 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow==2.4.1) (1.6.3) Collecting tensorflow-estimator<2.5.0,>=2.4.0 Using cached tensorflow_estimator-2.4.0-py2.py3-none-any.whl (462 kB) Requirement already satisfied: google-pasta~=0.2 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow==2.4.1) (0.2.0) Requirement already satisfied: setuptools>=41.0.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorboard~=2.4->tensorflow==2.4.1) (49.6.0.post20210108) Requirement already satisfied: requests<3,>=2.21.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorboard~=2.4->tensorflow==2.4.1) (2.25.1) Collecting tensorboard-data-server<0.7.0,>=0.6.0 Using cached tensorboard_data_server-0.6.1-py3-none-manylinux2010_x86_64.whl (4.9 MB) Requirement already satisfied: markdown>=2.6.8 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorboard~=2.4->tensorflow==2.4.1) (3.3.4) Requirement already satisfied: werkzeug>=1.0.1 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorboard~=2.4->tensorflow==2.4.1) (1.0.1) Requirement already satisfied: google-auth<3,>=1.6.3 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorboard~=2.4->tensorflow==2.4.1) (1.27.1) Requirement already satisfied: google-auth-oauthlib<0.5,>=0.4.1 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorboard~=2.4->tensorflow==2.4.1) (0.4.3) Collecting tensorboard-plugin-wit>=1.6.0 Using cached tensorboard_plugin_wit-1.8.1-py3-none-any.whl (781 kB) Requirement already satisfied: cachetools<5.0,>=2.0.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from google-auth<3,>=1.6.3->tensorboard~=2.4->tensorflow==2.4.1) (4.2.1) Requirement already satisfied: rsa<5,>=3.1.4 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from google-auth<3,>=1.6.3->tensorboard~=2.4->tensorflow==2.4.1) (4.7.2) Requirement already satisfied: pyasn1-modules>=0.2.1 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from google-auth<3,>=1.6.3->tensorboard~=2.4->tensorflow==2.4.1) (0.2.8) Requirement already satisfied: requests-oauthlib>=0.7.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from google-auth-oauthlib<0.5,>=0.4.1->tensorboard~=2.4->tensorflow==2.4.1) (1.3.0) Requirement already satisfied: importlib-metadata in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from markdown>=2.6.8->tensorboard~=2.4->tensorflow==2.4.1) (3.7.2) Requirement already satisfied: pyasn1<0.5.0,>=0.4.6 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from pyasn1-modules>=0.2.1->google-auth<3,>=1.6.3->tensorboard~=2.4->tensorflow==2.4.1) (0.4.8) Requirement already satisfied: urllib3<1.27,>=1.21.1 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from requests<3,>=2.21.0->tensorboard~=2.4->tensorflow==2.4.1) (1.26.3) Requirement already satisfied: certifi>=2017.4.17 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from requests<3,>=2.21.0->tensorboard~=2.4->tensorflow==2.4.1) (2020.12.5) Requirement already satisfied: chardet<5,>=3.0.2 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from requests<3,>=2.21.0->tensorboard~=2.4->tensorflow==2.4.1) (4.0.0) Requirement already satisfied: idna<3,>=2.5 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from requests<3,>=2.21.0->tensorboard~=2.4->tensorflow==2.4.1) (2.10) Requirement already satisfied: oauthlib>=3.0.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from requests-oauthlib>=0.7.0->google-auth-oauthlib<0.5,>=0.4.1->tensorboard~=2.4->tensorflow==2.4.1) (3.1.0) Requirement already satisfied: zipp>=0.5 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from importlib-metadata->markdown>=2.6.8->tensorboard~=2.4->tensorflow==2.4.1) (3.4.1) Installing collected packages: tensorboard-plugin-wit, tensorboard-data-server, tensorflow-estimator, tensorboard, opt-einsum, flatbuffers, tensorflow Successfully installed flatbuffers-1.12 opt-einsum-3.3.0 tensorboard-2.10.1 tensorboard-data-server-0.6.1 tensorboard-plugin-wit-1.8.1 tensorflow-2.4.1 tensorflow-estimator-2.4.0 Processing /home/biocbuild/bbs-3.19-bioc-longtests/meat/crisprScore.Rcheck/crisprScore/python/enpamgb Requirement already satisfied: biopython>=1.74 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from sgrna-modeler==0.1.0) (1.78) Requirement already satisfied: joblib>=0.13.2 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from sgrna-modeler==0.1.0) (1.0.1) Requirement already satisfied: numpy>=1.16.4 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from sgrna-modeler==0.1.0) (1.19.5) Requirement already satisfied: pandas>=0.24.2 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from sgrna-modeler==0.1.0) (1.1.5) Requirement already satisfied: scikit-learn==0.21.2 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from sgrna-modeler==0.1.0) (0.21.2) Requirement already satisfied: scipy>=1.3.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from sgrna-modeler==0.1.0) (1.5.3) Requirement already satisfied: tensorflow>=1.14.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from sgrna-modeler==0.1.0) (2.4.1) Requirement already satisfied: python-dateutil>=2.7.3 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from pandas>=0.24.2->sgrna-modeler==0.1.0) (2.8.1) Requirement already satisfied: pytz>=2017.2 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from pandas>=0.24.2->sgrna-modeler==0.1.0) (2021.1) Requirement already satisfied: six>=1.5 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from python-dateutil>=2.7.3->pandas>=0.24.2->sgrna-modeler==0.1.0) (1.15.0) Requirement already satisfied: tensorboard~=2.4 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow>=1.14.0->sgrna-modeler==0.1.0) (2.10.1) Requirement already satisfied: keras-preprocessing~=1.1.2 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow>=1.14.0->sgrna-modeler==0.1.0) (1.1.2) Requirement already satisfied: wheel~=0.35 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow>=1.14.0->sgrna-modeler==0.1.0) (0.36.2) Requirement already satisfied: wrapt~=1.12.1 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow>=1.14.0->sgrna-modeler==0.1.0) (1.12.1) Requirement already satisfied: typing-extensions~=3.7.4 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow>=1.14.0->sgrna-modeler==0.1.0) (3.7.4.3) Requirement already satisfied: h5py~=2.10.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow>=1.14.0->sgrna-modeler==0.1.0) (2.10.0) Requirement already satisfied: opt-einsum~=3.3.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow>=1.14.0->sgrna-modeler==0.1.0) (3.3.0) Requirement already satisfied: termcolor~=1.1.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow>=1.14.0->sgrna-modeler==0.1.0) (1.1.0) Requirement already satisfied: tensorflow-estimator<2.5.0,>=2.4.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow>=1.14.0->sgrna-modeler==0.1.0) (2.4.0) Requirement already satisfied: astunparse~=1.6.3 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow>=1.14.0->sgrna-modeler==0.1.0) (1.6.3) Requirement already satisfied: protobuf>=3.9.2 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow>=1.14.0->sgrna-modeler==0.1.0) (3.15.5) Requirement already satisfied: grpcio~=1.32.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow>=1.14.0->sgrna-modeler==0.1.0) (1.32.0) Requirement already satisfied: absl-py~=0.10 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow>=1.14.0->sgrna-modeler==0.1.0) (0.12.0) Requirement already satisfied: flatbuffers~=1.12.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow>=1.14.0->sgrna-modeler==0.1.0) (1.12) Requirement already satisfied: google-pasta~=0.2 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow>=1.14.0->sgrna-modeler==0.1.0) (0.2.0) Requirement already satisfied: gast==0.3.3 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow>=1.14.0->sgrna-modeler==0.1.0) (0.3.3) Requirement already satisfied: tensorboard-data-server<0.7.0,>=0.6.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (0.6.1) Requirement already satisfied: werkzeug>=1.0.1 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (1.0.1) Requirement already satisfied: requests<3,>=2.21.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (2.25.1) Requirement already satisfied: google-auth-oauthlib<0.5,>=0.4.1 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (0.4.3) Requirement already satisfied: google-auth<3,>=1.6.3 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (1.27.1) Requirement already satisfied: markdown>=2.6.8 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (3.3.4) Requirement already satisfied: tensorboard-plugin-wit>=1.6.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (1.8.1) Requirement already satisfied: setuptools>=41.0.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (49.6.0.post20210108) Requirement already satisfied: rsa<5,>=3.1.4 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from google-auth<3,>=1.6.3->tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (4.7.2) Requirement already satisfied: pyasn1-modules>=0.2.1 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from google-auth<3,>=1.6.3->tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (0.2.8) Requirement already satisfied: cachetools<5.0,>=2.0.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from google-auth<3,>=1.6.3->tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (4.2.1) Requirement already satisfied: requests-oauthlib>=0.7.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from google-auth-oauthlib<0.5,>=0.4.1->tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (1.3.0) Requirement already satisfied: importlib-metadata in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from markdown>=2.6.8->tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (3.7.2) Requirement already satisfied: pyasn1<0.5.0,>=0.4.6 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from pyasn1-modules>=0.2.1->google-auth<3,>=1.6.3->tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (0.4.8) Requirement already satisfied: certifi>=2017.4.17 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from requests<3,>=2.21.0->tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (2020.12.5) Requirement already satisfied: idna<3,>=2.5 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from requests<3,>=2.21.0->tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (2.10) Requirement already satisfied: chardet<5,>=3.0.2 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from requests<3,>=2.21.0->tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (4.0.0) Requirement already satisfied: urllib3<1.27,>=1.21.1 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from requests<3,>=2.21.0->tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (1.26.3) Requirement already satisfied: oauthlib>=3.0.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from requests-oauthlib>=0.7.0->google-auth-oauthlib<0.5,>=0.4.1->tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (3.1.0) Requirement already satisfied: zipp>=0.5 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from importlib-metadata->markdown>=2.6.8->tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (3.4.1) Building wheels for collected packages: sgrna-modeler Building wheel for sgrna-modeler (setup.py): started Building wheel for sgrna-modeler (setup.py): finished with status 'done' Created wheel for sgrna-modeler: filename=sgrna_modeler-0.1.0-py3-none-any.whl size=459416 sha256=54b4957bfaedb24ac8e0d4b6bdc2b3ee119bd8475b54a3c3f93a24e03209c503 Stored in directory: /tmp/pip-ephem-wheel-cache-4xz5k2k1/wheels/9f/4c/ab/8f4690040a9feb3f3df083b97711d70bc8ffd1bcd23c9287bc Successfully built sgrna-modeler Installing collected packages: sgrna-modeler Successfully installed sgrna-modeler-0.1.0 2024-05-04 16:45:40.768543: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0 Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /var/cache/basilisk/1.16.0/crisprScore/1.8.0/lindel_basilisk added / updated specs: - python=3.6 The following NEW packages will be INSTALLED: _libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge _openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu ca-certificates conda-forge/linux-64::ca-certificates-2024.2.2-hbcca054_0 certifi conda-forge/linux-64::certifi-2016.9.26-py36_0 ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.40-h55db66e_0 libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5 libgcc-ng conda-forge/linux-64::libgcc-ng-13.2.0-h77fa898_6 libgomp conda-forge/linux-64::libgomp-13.2.0-h77fa898_6 libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0 libsqlite conda-forge/linux-64::libsqlite-3.45.3-h2797004_0 libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-13.2.0-hc0a3c3a_6 libzlib conda-forge/linux-64::libzlib-1.2.13-hd590300_5 ncurses conda-forge/linux-64::ncurses-6.4.20240210-h59595ed_0 openssl conda-forge/linux-64::openssl-1.1.1w-hd590300_0 pip conda-forge/linux-64::pip-20.0.2-py36_1 python conda-forge/linux-64::python-3.6.15-hb7a2778_0_cpython python_abi conda-forge/linux-64::python_abi-3.6-2_cp36m readline conda-forge/linux-64::readline-8.2-h8228510_1 setuptools conda-forge/linux-64::setuptools-49.6.0-py36h5fab9bb_3 sqlite conda-forge/linux-64::sqlite-3.45.3-h2c6b66d_0 tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101 wheel conda-forge/linux-64::wheel-0.34.2-py36_0 xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.12.0 latest version: 24.4.0 Please update conda by running $ conda update -n base -c defaults conda # All requested packages already installed. Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve. Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.12.0 latest version: 24.4.0 Please update conda by running $ conda update -n base -c defaults conda ## Package Plan ## environment location: /var/cache/basilisk/1.16.0/crisprScore/1.8.0/lindel_basilisk added / updated specs: - certifi=2020.12.5 - numpy=1.19.5 - pip=21.0.1 - python[version='3.6.*,3.6.*'] - scipy=1.5.3 - setuptools=49.6.0 - wheel=0.36.2 The following NEW packages will be INSTALLED: libblas conda-forge/linux-64::libblas-3.9.0-20_linux64_openblas libcblas conda-forge/linux-64::libcblas-3.9.0-20_linux64_openblas libgfortran-ng conda-forge/linux-64::libgfortran-ng-13.2.0-h69a702a_6 libgfortran5 conda-forge/linux-64::libgfortran5-13.2.0-h43f5ff8_6 liblapack conda-forge/linux-64::liblapack-3.9.0-20_linux64_openblas libopenblas conda-forge/linux-64::libopenblas-0.3.25-pthreads_h413a1c8_0 numpy conda-forge/linux-64::numpy-1.19.5-py36hfc0c790_2 scipy conda-forge/linux-64::scipy-1.5.3-py36h81d768a_1 The following packages will be UPDATED: certifi 2016.9.26-py36_0 --> 2020.12.5-py36h5fab9bb_1 pip conda-forge/linux-64::pip-20.0.2-py36~ --> conda-forge/noarch::pip-21.0.1-pyhd8ed1ab_0 wheel conda-forge/linux-64::wheel-0.34.2-py~ --> conda-forge/noarch::wheel-0.36.2-pyhd3deb0d_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Processing /home/biocbuild/bbs-3.19-bioc-longtests/meat/crisprScore.Rcheck/crisprScore/python/lindel Requirement already satisfied: numpy in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/lindel_basilisk/lib/python3.6/site-packages (from Lindel==1.0) (1.19.5) Requirement already satisfied: scipy in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/lindel_basilisk/lib/python3.6/site-packages (from Lindel==1.0) (1.5.3) Building wheels for collected packages: Lindel Building wheel for Lindel (setup.py): started Building wheel for Lindel (setup.py): finished with status 'done' Created wheel for Lindel: filename=Lindel-1.0-py3-none-any.whl size=33602 sha256=f8a3e0a89bd0d7f2d4ac3e889639be4924f114357beef9433d6d1f340bfc3776 Stored in directory: /tmp/pip-ephem-wheel-cache-p_un1xk3/wheels/73/84/df/e8e4b76d3d9e2371c819c0bdab01f6b981ed278fc5e77ada6c Successfully built Lindel Installing collected packages: Lindel Successfully installed Lindel-1.0 Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk added / updated specs: - python=3.6 The following NEW packages will be INSTALLED: _libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge _openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu ca-certificates conda-forge/linux-64::ca-certificates-2024.2.2-hbcca054_0 certifi conda-forge/linux-64::certifi-2016.9.26-py36_0 ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.40-h55db66e_0 libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5 libgcc-ng conda-forge/linux-64::libgcc-ng-13.2.0-h77fa898_6 libgomp conda-forge/linux-64::libgomp-13.2.0-h77fa898_6 libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0 libsqlite conda-forge/linux-64::libsqlite-3.45.3-h2797004_0 libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-13.2.0-hc0a3c3a_6 libzlib conda-forge/linux-64::libzlib-1.2.13-hd590300_5 ncurses conda-forge/linux-64::ncurses-6.4.20240210-h59595ed_0 openssl conda-forge/linux-64::openssl-1.1.1w-hd590300_0 pip conda-forge/linux-64::pip-20.0.2-py36_1 python conda-forge/linux-64::python-3.6.15-hb7a2778_0_cpython python_abi conda-forge/linux-64::python_abi-3.6-2_cp36m readline conda-forge/linux-64::readline-8.2-h8228510_1 setuptools conda-forge/linux-64::setuptools-49.6.0-py36h5fab9bb_3 sqlite conda-forge/linux-64::sqlite-3.45.3-h2c6b66d_0 tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101 wheel conda-forge/linux-64::wheel-0.34.2-py36_0 xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.12.0 latest version: 24.4.0 Please update conda by running $ conda update -n base -c defaults conda # All requested packages already installed. Collecting package metadata (current_repodata.json): ...working... WARNING conda.models.version:get_matcher(535): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.7.1.*, but conda is ignoring the .* and treating it as 1.7.1 done Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve. Collecting package metadata (repodata.json): ...working... WARNING conda.models.version:get_matcher(535): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.8.0.*, but conda is ignoring the .* and treating it as 1.8.0 WARNING conda.models.version:get_matcher(535): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.9.0.*, but conda is ignoring the .* and treating it as 1.9.0 WARNING conda.models.version:get_matcher(535): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.6.0.*, but conda is ignoring the .* and treating it as 1.6.0 done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.12.0 latest version: 24.4.0 Please update conda by running $ conda update -n base -c defaults conda ## Package Plan ## environment location: /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk added / updated specs: - absl-py=0.12.0 - astor=0.8.1 - biopython=1.71 - bleach=1.5.0 - certifi=2020.12.5 - cycler=0.10.0 - decorator=4.4.2 - dotmap=1.2.20 - gast=0.4.0 - gpy=1.9.8 - gpyopt=1.2.6 - grpcio=1.36.1 - h5py=2.9.0 - html5lib=0.9999999 - importlib-metadata=3.7.2 - keras=2.1.6 - kiwisolver=1.3.1 - mako=1.1.4 - markdown=3.3.4 - markupsafe=1.1.1 - matplotlib=3.1.1 - numpy=1.14.0 - pandas=0.25.3 - paramz=0.9.5 - pip=21.0.1 - protobuf=3.15.5 - pygpu=0.7.6 - pyparsing=2.4.7 - python-dateutil=2.8.1 - python[version='3.6.*,3.6.*'] - pytz=2021.1 - pyyaml=5.4.1 - scikit-learn=0.19.1 - scipy=1.1.0 - setuptools=49.6.0 - six=1.15.0 - tensorboard=1.8.0 - tensorflow=1.8.0 - termcolor=1.1.0 - theano=1.0.5 - tornado=6.1 - typing-extensions=3.7.4.3 - viennarna=2.4.5 - webencodings=0.5.1 - werkzeug=1.0.1 - wheel=0.36.2 - zipp=3.4.1 The following packages will be downloaded: package | build ---------------------------|----------------- astor-0.8.1 | pyh9f0ad1d_0 25 KB conda-forge binutils_impl_linux-64-2.39| he00db2b_1 4.7 MB conda-forge binutils_linux-64-2.39 | h5fc0e48_13 27 KB conda-forge biopython-1.71 | py36_0 2.6 MB conda-forge blas-1.1 | openblas 1 KB conda-forge bleach-1.5.0 | py36_0 23 KB conda-forge dbus-1.13.6 | h5008d03_3 604 KB conda-forge dotmap-1.2.20 | py_0 8 KB conda-forge gcc_impl_linux-64-9.5.0 | h99780fb_19 43.5 MB conda-forge gcc_linux-64-9.5.0 | h4258300_13 29 KB conda-forge glib-2.80.0 | hf2295e7_6 584 KB conda-forge glib-tools-2.80.0 | hde27a5a_6 110 KB conda-forge gpy-1.9.8 | py36hd352d35_0 1.6 MB conda-forge gpyopt-1.2.6 | pyh8c360ce_0 56 KB conda-forge grpcio-1.36.1 | py36h8e87921_0 2.1 MB conda-forge gst-plugins-base-1.14.1 | h6a678d5_1 2.2 MB gstreamer-1.14.1 | h5eee18b_1 1.7 MB gxx_impl_linux-64-9.5.0 | h99780fb_19 10.6 MB conda-forge gxx_linux-64-9.5.0 | h43f449f_13 28 KB conda-forge h5py-2.9.0 |nompi_py36hf008753_1102 1.2 MB conda-forge hdf5-1.10.4 |nompi_h3c11f04_1106 5.3 MB conda-forge html5lib-0.9999999 | py36_0 181 KB conda-forge keras-2.1.6 | py36_0 500 KB conda-forge kernel-headers_linux-64-2.6.32| he073ed8_17 694 KB conda-forge kiwisolver-1.3.1 | py36h605e78d_1 78 KB conda-forge ld_impl_linux-64-2.39 | hcc3a1bd_1 675 KB conda-forge libgcc-devel_linux-64-9.5.0| h0a57e50_19 4.0 MB conda-forge libgfortran-3.0.0 | 1 281 KB conda-forge libglib-2.80.0 | hf2295e7_6 3.8 MB conda-forge libsanitizer-9.5.0 | h2f262e1_19 6.9 MB conda-forge libstdcxx-devel_linux-64-9.5.0| h0a57e50_19 9.9 MB conda-forge markupsafe-1.1.1 | py36h8f6f2f9_3 27 KB conda-forge matplotlib-3.1.1 | py36h5429711_0 5.0 MB numpy-1.14.0 |py36_blas_openblas_200 9.0 MB conda-forge openblas-0.2.20 | 8 17.0 MB conda-forge pandas-0.25.3 | py36he6710b0_0 8.8 MB paramz-0.9.5 | py_0 60 KB conda-forge pcre2-10.43 | hcad00b1_0 929 KB conda-forge pygpu-0.7.6 |py36h3010b51_1000 657 KB conda-forge pyqt-5.9.2 | py36hcca6a23_4 5.7 MB conda-forge pyyaml-5.4.1 | py36h8f6f2f9_1 194 KB conda-forge qt-5.9.7 | h5867ecd_1 68.5 MB scikit-learn-0.19.1 |py36_blas_openblas_201 12.8 MB conda-forge scipy-1.1.0 |py36_blas_openblash7943236_201 40.3 MB conda-forge sip-4.19.8 |py36hf484d3e_1000 290 KB conda-forge sysroot_linux-64-2.12 | he073ed8_17 14.4 MB conda-forge tensorboard-1.8.0 | py36_1 3.1 MB conda-forge tensorflow-1.8.0 | py36_1 42.1 MB conda-forge theano-1.0.5 | py36hc4f0c31_1 3.7 MB conda-forge tornado-6.1 | py36h8f6f2f9_1 643 KB conda-forge viennarna-2.4.5 | py36hd28b015_2 9.7 MB bioconda webencodings-0.5.1 | pyhd8ed1ab_2 15 KB conda-forge ------------------------------------------------------------ Total: 346.4 MB The following NEW packages will be INSTALLED: absl-py conda-forge/noarch::absl-py-0.12.0-pyhd8ed1ab_0 astor conda-forge/noarch::astor-0.8.1-pyh9f0ad1d_0 binutils_impl_lin~ conda-forge/linux-64::binutils_impl_linux-64-2.39-he00db2b_1 binutils_linux-64 conda-forge/linux-64::binutils_linux-64-2.39-h5fc0e48_13 biopython conda-forge/linux-64::biopython-1.71-py36_0 blas conda-forge/linux-64::blas-1.1-openblas bleach conda-forge/linux-64::bleach-1.5.0-py36_0 bzip2 conda-forge/linux-64::bzip2-1.0.8-hd590300_5 c-ares conda-forge/linux-64::c-ares-1.28.1-hd590300_0 cycler conda-forge/noarch::cycler-0.10.0-py_2 dbus conda-forge/linux-64::dbus-1.13.6-h5008d03_3 decorator conda-forge/noarch::decorator-4.4.2-py_0 dotmap conda-forge/noarch::dotmap-1.2.20-py_0 expat conda-forge/linux-64::expat-2.6.2-h59595ed_0 fontconfig conda-forge/linux-64::fontconfig-2.14.2-h14ed4e7_0 freetype conda-forge/linux-64::freetype-2.12.1-h267a509_2 gast conda-forge/noarch::gast-0.4.0-pyh9f0ad1d_0 gcc_impl_linux-64 conda-forge/linux-64::gcc_impl_linux-64-9.5.0-h99780fb_19 gcc_linux-64 conda-forge/linux-64::gcc_linux-64-9.5.0-h4258300_13 glib conda-forge/linux-64::glib-2.80.0-hf2295e7_6 glib-tools conda-forge/linux-64::glib-tools-2.80.0-hde27a5a_6 gpy conda-forge/linux-64::gpy-1.9.8-py36hd352d35_0 gpyopt conda-forge/noarch::gpyopt-1.2.6-pyh8c360ce_0 grpcio conda-forge/linux-64::grpcio-1.36.1-py36h8e87921_0 gst-plugins-base pkgs/main/linux-64::gst-plugins-base-1.14.1-h6a678d5_1 gstreamer pkgs/main/linux-64::gstreamer-1.14.1-h5eee18b_1 gxx_impl_linux-64 conda-forge/linux-64::gxx_impl_linux-64-9.5.0-h99780fb_19 gxx_linux-64 conda-forge/linux-64::gxx_linux-64-9.5.0-h43f449f_13 h5py conda-forge/linux-64::h5py-2.9.0-nompi_py36hf008753_1102 hdf5 conda-forge/linux-64::hdf5-1.10.4-nompi_h3c11f04_1106 html5lib conda-forge/linux-64::html5lib-0.9999999-py36_0 icu conda-forge/linux-64::icu-58.2-hf484d3e_1000 importlib-metadata conda-forge/linux-64::importlib-metadata-3.7.2-py36h5fab9bb_0 jpeg conda-forge/linux-64::jpeg-9e-h0b41bf4_3 keras conda-forge/linux-64::keras-2.1.6-py36_0 kernel-headers_li~ conda-forge/noarch::kernel-headers_linux-64-2.6.32-he073ed8_17 kiwisolver conda-forge/linux-64::kiwisolver-1.3.1-py36h605e78d_1 libexpat conda-forge/linux-64::libexpat-2.6.2-h59595ed_0 libgcc-devel_linu~ conda-forge/linux-64::libgcc-devel_linux-64-9.5.0-h0a57e50_19 libgfortran conda-forge/linux-64::libgfortran-3.0.0-1 libgfortran-ng conda-forge/linux-64::libgfortran-ng-7.5.0-h14aa051_20 libgfortran4 conda-forge/linux-64::libgfortran4-7.5.0-h14aa051_20 libglib conda-forge/linux-64::libglib-2.80.0-hf2295e7_6 libgpuarray conda-forge/linux-64::libgpuarray-0.7.6-h7f98852_1003 libiconv conda-forge/linux-64::libiconv-1.17-hd590300_2 libpng conda-forge/linux-64::libpng-1.6.43-h2797004_0 libprotobuf conda-forge/linux-64::libprotobuf-3.15.5-h780b84a_0 libsanitizer conda-forge/linux-64::libsanitizer-9.5.0-h2f262e1_19 libstdcxx-devel_l~ conda-forge/linux-64::libstdcxx-devel_linux-64-9.5.0-h0a57e50_19 libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0 libxcb conda-forge/linux-64::libxcb-1.16-hd590300_0 libxml2 conda-forge/linux-64::libxml2-2.9.9-h13577e0_2 mako conda-forge/noarch::mako-1.1.4-pyh44b312d_0 markdown conda-forge/noarch::markdown-3.3.4-pyhd8ed1ab_0 markupsafe conda-forge/linux-64::markupsafe-1.1.1-py36h8f6f2f9_3 matplotlib pkgs/main/linux-64::matplotlib-3.1.1-py36h5429711_0 numpy conda-forge/linux-64::numpy-1.14.0-py36_blas_openblas_200 openblas conda-forge/linux-64::openblas-0.2.20-8 pandas pkgs/main/linux-64::pandas-0.25.3-py36he6710b0_0 paramz conda-forge/noarch::paramz-0.9.5-py_0 pcre2 conda-forge/linux-64::pcre2-10.43-hcad00b1_0 protobuf conda-forge/linux-64::protobuf-3.15.5-py36hc4f0c31_0 pthread-stubs conda-forge/linux-64::pthread-stubs-0.4-h36c2ea0_1001 pygpu conda-forge/linux-64::pygpu-0.7.6-py36h3010b51_1000 pyparsing conda-forge/noarch::pyparsing-2.4.7-pyhd8ed1ab_1 pyqt conda-forge/linux-64::pyqt-5.9.2-py36hcca6a23_4 python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0 pytz conda-forge/noarch::pytz-2021.1-pyhd8ed1ab_0 pyyaml conda-forge/linux-64::pyyaml-5.4.1-py36h8f6f2f9_1 qt pkgs/main/linux-64::qt-5.9.7-h5867ecd_1 scikit-learn conda-forge/linux-64::scikit-learn-0.19.1-py36_blas_openblas_201 scipy conda-forge/linux-64::scipy-1.1.0-py36_blas_openblash7943236_201 sip conda-forge/linux-64::sip-4.19.8-py36hf484d3e_1000 six conda-forge/noarch::six-1.15.0-pyh9f0ad1d_0 sysroot_linux-64 conda-forge/noarch::sysroot_linux-64-2.12-he073ed8_17 tensorboard conda-forge/linux-64::tensorboard-1.8.0-py36_1 tensorflow conda-forge/linux-64::tensorflow-1.8.0-py36_1 termcolor conda-forge/noarch::termcolor-1.1.0-pyhd8ed1ab_3 theano conda-forge/linux-64::theano-1.0.5-py36hc4f0c31_1 tornado conda-forge/linux-64::tornado-6.1-py36h8f6f2f9_1 typing-extensions conda-forge/noarch::typing-extensions-3.7.4.3-0 typing_extensions conda-forge/noarch::typing_extensions-3.7.4.3-py_0 viennarna bioconda/linux-64::viennarna-2.4.5-py36hd28b015_2 webencodings conda-forge/noarch::webencodings-0.5.1-pyhd8ed1ab_2 werkzeug conda-forge/noarch::werkzeug-1.0.1-pyh9f0ad1d_0 xorg-libxau conda-forge/linux-64::xorg-libxau-1.0.11-hd590300_0 xorg-libxdmcp conda-forge/linux-64::xorg-libxdmcp-1.1.3-h7f98852_0 yaml conda-forge/linux-64::yaml-0.2.5-h7f98852_2 zipp conda-forge/noarch::zipp-3.4.1-pyhd8ed1ab_0 zlib conda-forge/linux-64::zlib-1.2.13-hd590300_5 The following packages will be UPDATED: certifi 2016.9.26-py36_0 --> 2020.12.5-py36h5fab9bb_1 pip conda-forge/linux-64::pip-20.0.2-py36~ --> conda-forge/noarch::pip-21.0.1-pyhd8ed1ab_0 wheel conda-forge/linux-64::wheel-0.34.2-py~ --> conda-forge/noarch::wheel-0.36.2-pyhd3deb0d_0 The following packages will be DOWNGRADED: ld_impl_linux-64 2.40-h55db66e_0 --> 2.39-hcc3a1bd_1 Downloading and Extracting Packages libstdcxx-devel_linu | 9.9 MB | | 0% libstdcxx-devel_linu | 9.9 MB | | 0% libstdcxx-devel_linu | 9.9 MB | 4 | 4% libstdcxx-devel_linu | 9.9 MB | #9 | 20% libstdcxx-devel_linu | 9.9 MB | ###7 | 37% libstdcxx-devel_linu | 9.9 MB | #####3 | 54% libstdcxx-devel_linu | 9.9 MB | ######8 | 69% libstdcxx-devel_linu | 9.9 MB | ########5 | 86% libstdcxx-devel_linu | 9.9 MB | ########## | 100% ld_impl_linux-64-2.3 | 675 KB | | 0% ld_impl_linux-64-2.3 | 675 KB | ########## | 100% ld_impl_linux-64-2.3 | 675 KB | ########## | 100% h5py-2.9.0 | 1.2 MB | | 0% h5py-2.9.0 | 1.2 MB | ####9 | 50% h5py-2.9.0 | 1.2 MB | ########## | 100% h5py-2.9.0 | 1.2 MB | ########## | 100% bleach-1.5.0 | 23 KB | | 0% bleach-1.5.0 | 23 KB | ########## | 100% tornado-6.1 | 643 KB | | 0% tornado-6.1 | 643 KB | ########## | 100% tornado-6.1 | 643 KB | ########## | 100% webencodings-0.5.1 | 15 KB | | 0% webencodings-0.5.1 | 15 KB | ########## | 100% webencodings-0.5.1 | 15 KB | ########## | 100% blas-1.1 | 1 KB | | 0% blas-1.1 | 1 KB | ########## | 100% libgcc-devel_linux-6 | 4.0 MB | | 0% libgcc-devel_linux-6 | 4.0 MB | ##3 | 24% libgcc-devel_linux-6 | 4.0 MB | ######6 | 67% libgcc-devel_linux-6 | 4.0 MB | ########## | 100% sysroot_linux-64-2.1 | 14.4 MB | | 0% sysroot_linux-64-2.1 | 14.4 MB | 5 | 6% sysroot_linux-64-2.1 | 14.4 MB | #7 | 17% sysroot_linux-64-2.1 | 14.4 MB | ##8 | 29% sysroot_linux-64-2.1 | 14.4 MB | #### | 41% sysroot_linux-64-2.1 | 14.4 MB | #####2 | 52% sysroot_linux-64-2.1 | 14.4 MB | ######3 | 64% sysroot_linux-64-2.1 | 14.4 MB | #######5 | 75% sysroot_linux-64-2.1 | 14.4 MB | ########7 | 87% sysroot_linux-64-2.1 | 14.4 MB | #########8 | 99% sysroot_linux-64-2.1 | 14.4 MB | ########## | 100% dbus-1.13.6 | 604 KB | | 0% dbus-1.13.6 | 604 KB | ########## | 100% dbus-1.13.6 | 604 KB | ########## | 100% pygpu-0.7.6 | 657 KB | | 0% pygpu-0.7.6 | 657 KB | #########4 | 95% pygpu-0.7.6 | 657 KB | ########## | 100% pyyaml-5.4.1 | 194 KB | | 0% pyyaml-5.4.1 | 194 KB | ########## | 100% pyyaml-5.4.1 | 194 KB | ########## | 100% gxx_linux-64-9.5.0 | 28 KB | | 0% gxx_linux-64-9.5.0 | 28 KB | ########## | 100% gxx_linux-64-9.5.0 | 28 KB | ########## | 100% pandas-0.25.3 | 8.8 MB | | 0% pandas-0.25.3 | 8.8 MB | | 0% pandas-0.25.3 | 8.8 MB | | 1% pandas-0.25.3 | 8.8 MB | 1 | 2% pandas-0.25.3 | 8.8 MB | 4 | 4% pandas-0.25.3 | 8.8 MB | 8 | 8% pandas-0.25.3 | 8.8 MB | #3 | 14% pandas-0.25.3 | 8.8 MB | ## | 21% pandas-0.25.3 | 8.8 MB | ##7 | 28% pandas-0.25.3 | 8.8 MB | ###4 | 35% pandas-0.25.3 | 8.8 MB | ####2 | 42% pandas-0.25.3 | 8.8 MB | ####9 | 49% pandas-0.25.3 | 8.8 MB | #####6 | 56% pandas-0.25.3 | 8.8 MB | ######3 | 64% pandas-0.25.3 | 8.8 MB | ####### | 71% pandas-0.25.3 | 8.8 MB | #######7 | 78% pandas-0.25.3 | 8.8 MB | ########4 | 85% pandas-0.25.3 | 8.8 MB | #########2 | 92% pandas-0.25.3 | 8.8 MB | #########9 | 99% pandas-0.25.3 | 8.8 MB | ########## | 100% gpy-1.9.8 | 1.6 MB | | 0% gpy-1.9.8 | 1.6 MB | #1 | 12% gpy-1.9.8 | 1.6 MB | ########## | 100% gpy-1.9.8 | 1.6 MB | ########## | 100% viennarna-2.4.5 | 9.7 MB | | 0% viennarna-2.4.5 | 9.7 MB | | 0% viennarna-2.4.5 | 9.7 MB | #7 | 18% viennarna-2.4.5 | 9.7 MB | ###2 | 32% viennarna-2.4.5 | 9.7 MB | ####7 | 48% viennarna-2.4.5 | 9.7 MB | ######5 | 65% viennarna-2.4.5 | 9.7 MB | ########2 | 83% viennarna-2.4.5 | 9.7 MB | ########## | 100% viennarna-2.4.5 | 9.7 MB | ########## | 100% matplotlib-3.1.1 | 5.0 MB | | 0% matplotlib-3.1.1 | 5.0 MB | 3 | 3% matplotlib-3.1.1 | 5.0 MB | #6 | 16% matplotlib-3.1.1 | 5.0 MB | ##8 | 29% matplotlib-3.1.1 | 5.0 MB | ####1 | 42% matplotlib-3.1.1 | 5.0 MB | #####4 | 54% matplotlib-3.1.1 | 5.0 MB | ######7 | 67% matplotlib-3.1.1 | 5.0 MB | ######## | 80% matplotlib-3.1.1 | 5.0 MB | #########2 | 93% matplotlib-3.1.1 | 5.0 MB | ########## | 100% paramz-0.9.5 | 60 KB | | 0% paramz-0.9.5 | 60 KB | ########## | 100% gcc_impl_linux-64-9. | 43.5 MB | | 0% gcc_impl_linux-64-9. | 43.5 MB | 2 | 2% gcc_impl_linux-64-9. | 43.5 MB | 6 | 6% gcc_impl_linux-64-9. | 43.5 MB | # | 10% gcc_impl_linux-64-9. | 43.5 MB | #4 | 14% gcc_impl_linux-64-9. | 43.5 MB | #8 | 18% gcc_impl_linux-64-9. | 43.5 MB | ##2 | 22% gcc_impl_linux-64-9. | 43.5 MB | ##6 | 26% gcc_impl_linux-64-9. | 43.5 MB | ### | 30% gcc_impl_linux-64-9. | 43.5 MB | ###4 | 34% gcc_impl_linux-64-9. | 43.5 MB | ###7 | 37% gcc_impl_linux-64-9. | 43.5 MB | ####1 | 41% gcc_impl_linux-64-9. | 43.5 MB | ####5 | 45% gcc_impl_linux-64-9. | 43.5 MB | ####9 | 49% gcc_impl_linux-64-9. | 43.5 MB | #####2 | 53% gcc_impl_linux-64-9. | 43.5 MB | #####6 | 57% gcc_impl_linux-64-9. | 43.5 MB | ###### | 60% gcc_impl_linux-64-9. | 43.5 MB | ######4 | 64% gcc_impl_linux-64-9. | 43.5 MB | ######8 | 68% gcc_impl_linux-64-9. | 43.5 MB | #######2 | 72% gcc_impl_linux-64-9. | 43.5 MB | #######5 | 76% gcc_impl_linux-64-9. | 43.5 MB | #######9 | 80% gcc_impl_linux-64-9. | 43.5 MB | ########3 | 84% gcc_impl_linux-64-9. | 43.5 MB | ########7 | 88% gcc_impl_linux-64-9. | 43.5 MB | #########1 | 92% gcc_impl_linux-64-9. | 43.5 MB | #########5 | 96% gcc_impl_linux-64-9. | 43.5 MB | #########9 | 100% gcc_impl_linux-64-9. | 43.5 MB | ########## | 100% binutils_linux-64-2. | 27 KB | | 0% binutils_linux-64-2. | 27 KB | ########## | 100% binutils_linux-64-2. | 27 KB | ########## | 100% gcc_linux-64-9.5.0 | 29 KB | | 0% gcc_linux-64-9.5.0 | 29 KB | ########## | 100% gcc_linux-64-9.5.0 | 29 KB | ########## | 100% libsanitizer-9.5.0 | 6.9 MB | | 0% libsanitizer-9.5.0 | 6.9 MB | #3 | 14% libsanitizer-9.5.0 | 6.9 MB | ###8 | 39% libsanitizer-9.5.0 | 6.9 MB | ######2 | 62% libsanitizer-9.5.0 | 6.9 MB | ########6 | 87% libsanitizer-9.5.0 | 6.9 MB | ########## | 100% kiwisolver-1.3.1 | 78 KB | | 0% kiwisolver-1.3.1 | 78 KB | ########## | 100% grpcio-1.36.1 | 2.1 MB | | 0% grpcio-1.36.1 | 2.1 MB | #####2 | 52% grpcio-1.36.1 | 2.1 MB | ########## | 100% qt-5.9.7 | 68.5 MB | | 0% qt-5.9.7 | 68.5 MB | | 0% qt-5.9.7 | 68.5 MB | 1 | 1% qt-5.9.7 | 68.5 MB | 2 | 2% qt-5.9.7 | 68.5 MB | 3 | 3% qt-5.9.7 | 68.5 MB | 4 | 4% qt-5.9.7 | 68.5 MB | 4 | 5% qt-5.9.7 | 68.5 MB | 5 | 6% qt-5.9.7 | 68.5 MB | 6 | 7% qt-5.9.7 | 68.5 MB | 7 | 8% qt-5.9.7 | 68.5 MB | 8 | 9% qt-5.9.7 | 68.5 MB | 9 | 10% qt-5.9.7 | 68.5 MB | # | 11% qt-5.9.7 | 68.5 MB | #1 | 11% qt-5.9.7 | 68.5 MB | #2 | 12% qt-5.9.7 | 68.5 MB | #3 | 13% qt-5.9.7 | 68.5 MB | #4 | 14% qt-5.9.7 | 68.5 MB | #5 | 15% qt-5.9.7 | 68.5 MB | #6 | 16% qt-5.9.7 | 68.5 MB | #7 | 17% qt-5.9.7 | 68.5 MB | #7 | 18% qt-5.9.7 | 68.5 MB | #8 | 19% qt-5.9.7 | 68.5 MB | #9 | 20% qt-5.9.7 | 68.5 MB | ## | 21% qt-5.9.7 | 68.5 MB | ##1 | 22% qt-5.9.7 | 68.5 MB | ##2 | 23% qt-5.9.7 | 68.5 MB | ##3 | 23% qt-5.9.7 | 68.5 MB | ##4 | 24% qt-5.9.7 | 68.5 MB | ##5 | 25% qt-5.9.7 | 68.5 MB | ##6 | 26% qt-5.9.7 | 68.5 MB | ##7 | 27% qt-5.9.7 | 68.5 MB | ##8 | 28% qt-5.9.7 | 68.5 MB | ##9 | 29% qt-5.9.7 | 68.5 MB | ### | 30% qt-5.9.7 | 68.5 MB | ### | 31% qt-5.9.7 | 68.5 MB | ###1 | 32% qt-5.9.7 | 68.5 MB | ###2 | 33% qt-5.9.7 | 68.5 MB | ###3 | 34% qt-5.9.7 | 68.5 MB | ###4 | 35% qt-5.9.7 | 68.5 MB | ###5 | 36% qt-5.9.7 | 68.5 MB | ###6 | 37% qt-5.9.7 | 68.5 MB | ###7 | 37% qt-5.9.7 | 68.5 MB | ###8 | 38% qt-5.9.7 | 68.5 MB | ###9 | 39% qt-5.9.7 | 68.5 MB | #### | 40% qt-5.9.7 | 68.5 MB | ####1 | 41% qt-5.9.7 | 68.5 MB | ####2 | 42% qt-5.9.7 | 68.5 MB | ####2 | 43% qt-5.9.7 | 68.5 MB | ####3 | 44% qt-5.9.7 | 68.5 MB | ####4 | 45% qt-5.9.7 | 68.5 MB | ####5 | 46% qt-5.9.7 | 68.5 MB | ####6 | 47% qt-5.9.7 | 68.5 MB | ####7 | 48% qt-5.9.7 | 68.5 MB | ####8 | 48% qt-5.9.7 | 68.5 MB | ####9 | 49% qt-5.9.7 | 68.5 MB | ##### | 50% qt-5.9.7 | 68.5 MB | #####1 | 51% qt-5.9.7 | 68.5 MB | #####2 | 52% qt-5.9.7 | 68.5 MB | #####3 | 53% qt-5.9.7 | 68.5 MB | #####4 | 54% qt-5.9.7 | 68.5 MB | #####4 | 55% qt-5.9.7 | 68.5 MB | #####5 | 56% qt-5.9.7 | 68.5 MB | #####6 | 57% qt-5.9.7 | 68.5 MB | #####7 | 58% qt-5.9.7 | 68.5 MB | #####8 | 59% qt-5.9.7 | 68.5 MB | #####9 | 60% qt-5.9.7 | 68.5 MB | ###### | 61% qt-5.9.7 | 68.5 MB | ######1 | 61% qt-5.9.7 | 68.5 MB | ######2 | 62% qt-5.9.7 | 68.5 MB | ######3 | 63% qt-5.9.7 | 68.5 MB | ######4 | 64% qt-5.9.7 | 68.5 MB | ######5 | 65% qt-5.9.7 | 68.5 MB | ######6 | 66% qt-5.9.7 | 68.5 MB | ######7 | 67% qt-5.9.7 | 68.5 MB | ######7 | 68% qt-5.9.7 | 68.5 MB | ######8 | 69% qt-5.9.7 | 68.5 MB | ######9 | 70% qt-5.9.7 | 68.5 MB | ####### | 71% qt-5.9.7 | 68.5 MB | #######1 | 72% qt-5.9.7 | 68.5 MB | #######2 | 73% qt-5.9.7 | 68.5 MB | #######3 | 73% qt-5.9.7 | 68.5 MB | #######4 | 74% qt-5.9.7 | 68.5 MB | #######5 | 75% qt-5.9.7 | 68.5 MB | #######6 | 76% qt-5.9.7 | 68.5 MB | #######7 | 77% qt-5.9.7 | 68.5 MB | #######8 | 78% qt-5.9.7 | 68.5 MB | #######8 | 79% qt-5.9.7 | 68.5 MB | #######9 | 80% qt-5.9.7 | 68.5 MB | ######## | 81% qt-5.9.7 | 68.5 MB | ########1 | 82% qt-5.9.7 | 68.5 MB | ########2 | 83% qt-5.9.7 | 68.5 MB | ########3 | 84% qt-5.9.7 | 68.5 MB | ########4 | 85% qt-5.9.7 | 68.5 MB | ########5 | 85% qt-5.9.7 | 68.5 MB | ########6 | 86% qt-5.9.7 | 68.5 MB | ########7 | 87% qt-5.9.7 | 68.5 MB | ########8 | 88% qt-5.9.7 | 68.5 MB | ########9 | 89% qt-5.9.7 | 68.5 MB | ######### | 90% qt-5.9.7 | 68.5 MB | #########1 | 91% qt-5.9.7 | 68.5 MB | #########1 | 92% qt-5.9.7 | 68.5 MB | #########2 | 93% qt-5.9.7 | 68.5 MB | #########3 | 94% qt-5.9.7 | 68.5 MB | #########4 | 95% qt-5.9.7 | 68.5 MB | #########5 | 96% qt-5.9.7 | 68.5 MB | #########6 | 96% qt-5.9.7 | 68.5 MB | #########7 | 97% qt-5.9.7 | 68.5 MB | #########8 | 98% qt-5.9.7 | 68.5 MB | #########9 | 99% qt-5.9.7 | 68.5 MB | ########## | 100% tensorboard-1.8.0 | 3.1 MB | | 0% tensorboard-1.8.0 | 3.1 MB | ##6 | 27% tensorboard-1.8.0 | 3.1 MB | ########1 | 82% tensorboard-1.8.0 | 3.1 MB | ########## | 100% scikit-learn-0.19.1 | 12.8 MB | | 0% scikit-learn-0.19.1 | 12.8 MB | 3 | 4% scikit-learn-0.19.1 | 12.8 MB | #7 | 17% scikit-learn-0.19.1 | 12.8 MB | ### | 30% scikit-learn-0.19.1 | 12.8 MB | ####3 | 44% scikit-learn-0.19.1 | 12.8 MB | #####6 | 57% scikit-learn-0.19.1 | 12.8 MB | ####### | 70% scikit-learn-0.19.1 | 12.8 MB | ########3 | 83% scikit-learn-0.19.1 | 12.8 MB | #########5 | 96% scikit-learn-0.19.1 | 12.8 MB | ########## | 100% glib-2.80.0 | 584 KB | | 0% glib-2.80.0 | 584 KB | ########## | 100% glib-2.80.0 | 584 KB | ########## | 100% html5lib-0.9999999 | 181 KB | | 0% html5lib-0.9999999 | 181 KB | ########## | 100% html5lib-0.9999999 | 181 KB | ########## | 100% glib-tools-2.80.0 | 110 KB | | 0% glib-tools-2.80.0 | 110 KB | ########## | 100% glib-tools-2.80.0 | 110 KB | ########## | 100% kernel-headers_linux | 694 KB | | 0% kernel-headers_linux | 694 KB | ########## | 100% kernel-headers_linux | 694 KB | ########## | 100% markupsafe-1.1.1 | 27 KB | | 0% markupsafe-1.1.1 | 27 KB | ########## | 100% pyqt-5.9.2 | 5.7 MB | | 0% pyqt-5.9.2 | 5.7 MB | #8 | 19% pyqt-5.9.2 | 5.7 MB | ####8 | 49% pyqt-5.9.2 | 5.7 MB | #######8 | 78% pyqt-5.9.2 | 5.7 MB | ########## | 100% numpy-1.14.0 | 9.0 MB | | 0% numpy-1.14.0 | 9.0 MB | 7 | 7% numpy-1.14.0 | 9.0 MB | ## | 21% numpy-1.14.0 | 9.0 MB | ###8 | 39% numpy-1.14.0 | 9.0 MB | #####7 | 58% numpy-1.14.0 | 9.0 MB | #######6 | 77% numpy-1.14.0 | 9.0 MB | #########5 | 96% numpy-1.14.0 | 9.0 MB | ########## | 100% pcre2-10.43 | 929 KB | | 0% pcre2-10.43 | 929 KB | ########## | 100% pcre2-10.43 | 929 KB | ########## | 100% hdf5-1.10.4 | 5.3 MB | | 0% hdf5-1.10.4 | 5.3 MB | #7 | 18% hdf5-1.10.4 | 5.3 MB | ##### | 50% hdf5-1.10.4 | 5.3 MB | ########1 | 82% hdf5-1.10.4 | 5.3 MB | ########## | 100% gst-plugins-base-1.1 | 2.2 MB | | 0% gst-plugins-base-1.1 | 2.2 MB | #5 | 15% gst-plugins-base-1.1 | 2.2 MB | ####4 | 44% gst-plugins-base-1.1 | 2.2 MB | #######4 | 74% gst-plugins-base-1.1 | 2.2 MB | ########## | 100% binutils_impl_linux- | 4.7 MB | | 0% binutils_impl_linux- | 4.7 MB | ##1 | 22% binutils_impl_linux- | 4.7 MB | #####7 | 58% binutils_impl_linux- | 4.7 MB | #########3 | 94% binutils_impl_linux- | 4.7 MB | ########## | 100% gxx_impl_linux-64-9. | 10.6 MB | | 0% gxx_impl_linux-64-9. | 10.6 MB | 6 | 7% gxx_impl_linux-64-9. | 10.6 MB | ##2 | 23% gxx_impl_linux-64-9. | 10.6 MB | ###8 | 39% gxx_impl_linux-64-9. | 10.6 MB | #####4 | 55% gxx_impl_linux-64-9. | 10.6 MB | ####### | 71% gxx_impl_linux-64-9. | 10.6 MB | ########7 | 87% gxx_impl_linux-64-9. | 10.6 MB | ########## | 100% dotmap-1.2.20 | 8 KB | | 0% dotmap-1.2.20 | 8 KB | ########## | 100% keras-2.1.6 | 500 KB | | 0% keras-2.1.6 | 500 KB | ########## | 100% keras-2.1.6 | 500 KB | ########## | 100% astor-0.8.1 | 25 KB | | 0% astor-0.8.1 | 25 KB | ########## | 100% sip-4.19.8 | 290 KB | | 0% sip-4.19.8 | 290 KB | ########## | 100% sip-4.19.8 | 290 KB | ########## | 100% libglib-2.80.0 | 3.8 MB | | 0% libglib-2.80.0 | 3.8 MB | ##5 | 25% libglib-2.80.0 | 3.8 MB | ####### | 71% libglib-2.80.0 | 3.8 MB | ########## | 100% scipy-1.1.0 | 40.3 MB | | 0% scipy-1.1.0 | 40.3 MB | 1 | 2% scipy-1.1.0 | 40.3 MB | 5 | 6% scipy-1.1.0 | 40.3 MB | 9 | 10% scipy-1.1.0 | 40.3 MB | #3 | 14% scipy-1.1.0 | 40.3 MB | #7 | 18% scipy-1.1.0 | 40.3 MB | ##1 | 22% scipy-1.1.0 | 40.3 MB | ##5 | 25% scipy-1.1.0 | 40.3 MB | ##9 | 29% scipy-1.1.0 | 40.3 MB | ###3 | 33% scipy-1.1.0 | 40.3 MB | ###7 | 37% scipy-1.1.0 | 40.3 MB | ####1 | 41% scipy-1.1.0 | 40.3 MB | ####5 | 45% scipy-1.1.0 | 40.3 MB | ####9 | 49% scipy-1.1.0 | 40.3 MB | #####3 | 54% scipy-1.1.0 | 40.3 MB | #####7 | 58% scipy-1.1.0 | 40.3 MB | ######1 | 62% scipy-1.1.0 | 40.3 MB | ######6 | 66% scipy-1.1.0 | 40.3 MB | ####### | 70% scipy-1.1.0 | 40.3 MB | #######4 | 74% scipy-1.1.0 | 40.3 MB | #######8 | 78% scipy-1.1.0 | 40.3 MB | ########2 | 82% scipy-1.1.0 | 40.3 MB | ########6 | 86% scipy-1.1.0 | 40.3 MB | ######### | 91% scipy-1.1.0 | 40.3 MB | #########4 | 95% scipy-1.1.0 | 40.3 MB | #########9 | 99% scipy-1.1.0 | 40.3 MB | ########## | 100% gpyopt-1.2.6 | 56 KB | | 0% gpyopt-1.2.6 | 56 KB | ########## | 100% gpyopt-1.2.6 | 56 KB | ########## | 100% theano-1.0.5 | 3.7 MB | | 0% theano-1.0.5 | 3.7 MB | #9 | 19% theano-1.0.5 | 3.7 MB | ######5 | 65% theano-1.0.5 | 3.7 MB | ########## | 100% openblas-0.2.20 | 17.0 MB | | 0% openblas-0.2.20 | 17.0 MB | | 0% openblas-0.2.20 | 17.0 MB | 8 | 8% openblas-0.2.20 | 17.0 MB | #7 | 18% openblas-0.2.20 | 17.0 MB | ##7 | 28% openblas-0.2.20 | 17.0 MB | ###7 | 38% openblas-0.2.20 | 17.0 MB | ####7 | 47% openblas-0.2.20 | 17.0 MB | #####7 | 57% openblas-0.2.20 | 17.0 MB | ######7 | 67% openblas-0.2.20 | 17.0 MB | #######6 | 77% openblas-0.2.20 | 17.0 MB | ########6 | 87% openblas-0.2.20 | 17.0 MB | #########6 | 97% openblas-0.2.20 | 17.0 MB | ########## | 100% libgfortran-3.0.0 | 281 KB | | 0% libgfortran-3.0.0 | 281 KB | ########## | 100% libgfortran-3.0.0 | 281 KB | ########## | 100% biopython-1.71 | 2.6 MB | | 0% biopython-1.71 | 2.6 MB | | 1% biopython-1.71 | 2.6 MB | ######1 | 62% biopython-1.71 | 2.6 MB | ########## | 100% biopython-1.71 | 2.6 MB | ########## | 100% tensorflow-1.8.0 | 42.1 MB | | 0% tensorflow-1.8.0 | 42.1 MB | 2 | 2% tensorflow-1.8.0 | 42.1 MB | 6 | 6% tensorflow-1.8.0 | 42.1 MB | 9 | 10% tensorflow-1.8.0 | 42.1 MB | #3 | 14% tensorflow-1.8.0 | 42.1 MB | #7 | 18% tensorflow-1.8.0 | 42.1 MB | ##1 | 22% tensorflow-1.8.0 | 42.1 MB | ##5 | 26% tensorflow-1.8.0 | 42.1 MB | ##9 | 30% tensorflow-1.8.0 | 42.1 MB | ###3 | 34% tensorflow-1.8.0 | 42.1 MB | ###7 | 38% tensorflow-1.8.0 | 42.1 MB | ####1 | 42% tensorflow-1.8.0 | 42.1 MB | ####5 | 46% tensorflow-1.8.0 | 42.1 MB | ####9 | 50% tensorflow-1.8.0 | 42.1 MB | #####3 | 54% tensorflow-1.8.0 | 42.1 MB | #####7 | 58% tensorflow-1.8.0 | 42.1 MB | ######1 | 62% tensorflow-1.8.0 | 42.1 MB | ######5 | 66% tensorflow-1.8.0 | 42.1 MB | ######9 | 70% tensorflow-1.8.0 | 42.1 MB | #######3 | 74% tensorflow-1.8.0 | 42.1 MB | #######7 | 78% tensorflow-1.8.0 | 42.1 MB | ########1 | 82% tensorflow-1.8.0 | 42.1 MB | ########5 | 86% tensorflow-1.8.0 | 42.1 MB | ########9 | 90% tensorflow-1.8.0 | 42.1 MB | #########3 | 94% tensorflow-1.8.0 | 42.1 MB | #########7 | 98% tensorflow-1.8.0 | 42.1 MB | ########## | 100% gstreamer-1.14.1 | 1.7 MB | | 0% gstreamer-1.14.1 | 1.7 MB | #4 | 14% gstreamer-1.14.1 | 1.7 MB | #####2 | 53% gstreamer-1.14.1 | 1.7 MB | ######### | 90% gstreamer-1.14.1 | 1.7 MB | ########## | 100% Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Processing /home/biocbuild/bbs-3.19-bioc-longtests/meat/crisprScore.Rcheck/crisprScore/python/deephf Requirement already satisfied: scipy==1.1.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from DeepHF==1.0) (1.1.0) Requirement already satisfied: numpy==1.14.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from DeepHF==1.0) (1.14.0) Requirement already satisfied: h5py==2.9.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from DeepHF==1.0) (2.9.0) Requirement already satisfied: tensorflow==1.8.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from DeepHF==1.0) (1.8.0) Requirement already satisfied: keras==2.1.6 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from DeepHF==1.0) (2.1.6) Requirement already satisfied: scikit-learn==0.19.1 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from DeepHF==1.0) (0.19.1) Requirement already satisfied: biopython==1.71 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from DeepHF==1.0) (1.71) Requirement already satisfied: matplotlib in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from DeepHF==1.0) (3.1.1) Requirement already satisfied: DotMap in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from DeepHF==1.0) (1.2.20) Requirement already satisfied: GPyOpt in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from DeepHF==1.0) (1.2.6) Requirement already satisfied: pandas in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from DeepHF==1.0) (0.25.3) Requirement already satisfied: six in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from h5py==2.9.0->DeepHF==1.0) (1.15.0) Requirement already satisfied: pyyaml in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from keras==2.1.6->DeepHF==1.0) (5.4.1) Requirement already satisfied: tensorboard<1.9.0,>=1.8.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from tensorflow==1.8.0->DeepHF==1.0) (1.8.0) Requirement already satisfied: grpcio>=1.8.6 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from tensorflow==1.8.0->DeepHF==1.0) (1.36.1) Requirement already satisfied: wheel>=0.26 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from tensorflow==1.8.0->DeepHF==1.0) (0.36.2) Requirement already satisfied: protobuf>=3.4.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from tensorflow==1.8.0->DeepHF==1.0) (3.15.5) Requirement already satisfied: astor>=0.6.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from tensorflow==1.8.0->DeepHF==1.0) (0.8.1) Requirement already satisfied: gast>=0.2.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from tensorflow==1.8.0->DeepHF==1.0) (0.4.0) Requirement already satisfied: termcolor>=1.1.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from tensorflow==1.8.0->DeepHF==1.0) (1.1.0) Requirement already satisfied: absl-py>=0.1.6 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from tensorflow==1.8.0->DeepHF==1.0) (0.12.0) Requirement already satisfied: werkzeug>=0.11.10 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from tensorboard<1.9.0,>=1.8.0->tensorflow==1.8.0->DeepHF==1.0) (1.0.1) Requirement already satisfied: html5lib==0.9999999 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from tensorboard<1.9.0,>=1.8.0->tensorflow==1.8.0->DeepHF==1.0) (0.9999999) Requirement already satisfied: markdown>=2.6.8 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from tensorboard<1.9.0,>=1.8.0->tensorflow==1.8.0->DeepHF==1.0) (3.3.4) Requirement already satisfied: bleach==1.5.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from tensorboard<1.9.0,>=1.8.0->tensorflow==1.8.0->DeepHF==1.0) (1.5.0) Requirement already satisfied: importlib-metadata in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from markdown>=2.6.8->tensorboard<1.9.0,>=1.8.0->tensorflow==1.8.0->DeepHF==1.0) (3.7.2) Requirement already satisfied: GPy>=1.8 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from GPyOpt->DeepHF==1.0) (1.9.8) Requirement already satisfied: paramz>=0.9.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from GPy>=1.8->GPyOpt->DeepHF==1.0) (0.9.5) Requirement already satisfied: decorator>=4.0.10 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from paramz>=0.9.0->GPy>=1.8->GPyOpt->DeepHF==1.0) (4.4.2) Requirement already satisfied: typing-extensions>=3.6.4 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from importlib-metadata->markdown>=2.6.8->tensorboard<1.9.0,>=1.8.0->tensorflow==1.8.0->DeepHF==1.0) (3.7.4.3) Requirement already satisfied: zipp>=0.5 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from importlib-metadata->markdown>=2.6.8->tensorboard<1.9.0,>=1.8.0->tensorflow==1.8.0->DeepHF==1.0) (3.4.1) Requirement already satisfied: cycler>=0.10 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from matplotlib->DeepHF==1.0) (0.10.0) Requirement already satisfied: kiwisolver>=1.0.1 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from matplotlib->DeepHF==1.0) (1.3.1) Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from matplotlib->DeepHF==1.0) (2.4.7) Requirement already satisfied: python-dateutil>=2.1 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from matplotlib->DeepHF==1.0) (2.8.1) Requirement already satisfied: pytz>=2017.2 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from pandas->DeepHF==1.0) (2021.1) Building wheels for collected packages: DeepHF Building wheel for DeepHF (setup.py): started Building wheel for DeepHF (setup.py): finished with status 'done' Created wheel for DeepHF: filename=DeepHF-1.0-py3-none-any.whl size=10632 sha256=89cd00bbac8fe451e767d9205b6131b489406a61f522a2799bd17986623fbf75 Stored in directory: /tmp/pip-ephem-wheel-cache-ztqa1rm1/wheels/aa/67/49/62993cf3e944926127b040b634c9ef00cd4f6f44ed2300d453 Successfully built DeepHF Installing collected packages: DeepHF Successfully installed DeepHF-1.0 [ FAIL 0 | WARN 10 | SKIP 0 | PASS 8 ] [ FAIL 0 | WARN 10 | SKIP 0 | PASS 8 ] > > proc.time() user system elapsed 1869.383 75.834 2086.836
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no crisprScore_1.8.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.19-bioc-longtests/meat/crisprScore.Rcheck’ * using R version 4.4.0 beta (2024-04-15 r86425) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 * running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’ * checking for file ‘crisprScore/DESCRIPTION’ ... OK * this is package ‘crisprScore’ version ‘1.8.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... NOTE Found the following non-portable file paths: crisprScore/inst/python/deepspcas9/DeepCas9_Final/PreTrain-Final-False-3-5-7-100-70-40-0.001-550-True-80-60.data-00000-of-00001 crisprScore/inst/python/deepspcas9/DeepCas9_Final/PreTrain-Final-False-3-5-7-100-70-40-0.001-550-True-80-60.index crisprScore/inst/python/deepspcas9/DeepCas9_Final/PreTrain-Final-False-3-5-7-100-70-40-0.001-550-True-80-60.meta Tarballs are only required to store paths of up to 100 bytes and cannot store those of more than 256 bytes, with restrictions including to 100 bytes for the final component. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for sufficient/correct file permissions ... OK * checking whether package ‘crisprScore’ can be installed ... NOTE Found the following notes/warnings: Non-staged installation was used See ‘/home/biocbuild/bbs-3.19-bioc-longtests/meat/crisprScore.Rcheck/00install.out’ for details. * checking installed package size ... NOTE installed size is 5.5Mb sub-directories of 1Mb or more: python 4.2Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE License stub is invalid DCF. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... NOTE ':::' call which should be '::': ‘basilisk.utils:::getPythonBinary’ See the note in ?`:::` about the use of this operator. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... SKIPPED * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking line endings in shell scripts ... OK * checking line endings in Makefiles ... OK * checking for GNU extensions in Makefiles ... OK * checking include directives in Makefiles ... OK * checking files in ‘vignettes’ ... SKIPPED * checking examples ... SKIPPED * checking for unstated dependencies in ‘longtests’ ... OK * checking tests in ‘longtests’ ... Running ‘testthat.R’ OK * DONE Status: 5 NOTEs See ‘/home/biocbuild/bbs-3.19-bioc-longtests/meat/crisprScore.Rcheck/00check.log’ for details.
crisprScore.Rcheck/00install.out
* installing *source* package ‘crisprScore’ ... ** using non-staged installation via StagedInstall field ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (crisprScore)