Back to Long Tests report for BioC 3.19

This page was generated on 2024-05-04 23:55:02 -0400 (Sat, 04 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" 4753
palomino3Windows Server 2022 Datacenterx644.4.0 beta (2024-04-15 r86425 ucrt) -- "Puppy Cup" 4486
lconwaymacOS 12.7.1 Montereyx86_644.4.0 beta (2024-04-14 r86421) -- "Puppy Cup" 4519
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 18/33HostnameOS / ArchCHECK
crisprScore 1.8.0  (landing page)
Jean-Philippe Fortin
Snapshot Date: 2024-05-04 09:55:02 -0400 (Sat, 04 May 2024)
git_url: https://git.bioconductor.org/packages/crisprScore
git_branch: RELEASE_3_19
git_last_commit: af3634d
git_last_commit_date: 2024-04-30 11:39:45 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK  
palomino3Windows Server 2022 Datacenter / x64  ERROR  
lconwaymacOS 12.7.1 Monterey / x86_64  OK  

CHECK results for crisprScore on nebbiolo1


To the developers/maintainers of the crisprScore package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: crisprScore
Version: 1.8.0
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no crisprScore_1.8.0.tar.gz
StartedAt: 2024-05-04 16:23:03 -0400 (Sat, 04 May 2024)
EndedAt: 2024-05-04 16:59:38 -0400 (Sat, 04 May 2024)
EllapsedTime: 2195.5 seconds
RetCode: 0
Status:   OK  
CheckDir: crisprScore.Rcheck
Warnings: 0

Tests output

crisprScore.Rcheck/tests/testthat.Rout


R version 4.4.0 beta (2024-04-15 r86425) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(crisprScore)
Loading required package: crisprScoreData
Loading required package: ExperimentHub
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, table, tapply,
    union, unique, unsplit, which.max, which.min

Loading required package: AnnotationHub
Loading required package: BiocFileCache
Loading required package: dbplyr
> 
> test_check("crisprScore")
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /var/cache/basilisk/1.16.0/crisprScore/1.8.0/azimuth_basilisk

  added / updated specs:
    - python=2.7


The following NEW packages will be INSTALLED:

  _libgcc_mutex      conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
  _openmp_mutex      conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
  ca-certificates    conda-forge/linux-64::ca-certificates-2024.2.2-hbcca054_0
  certifi            conda-forge/linux-64::certifi-2019.11.28-py27h8c360ce_1
  ld_impl_linux-64   conda-forge/linux-64::ld_impl_linux-64-2.40-h55db66e_0
  libffi             conda-forge/linux-64::libffi-3.2.1-he1b5a44_1007
  libgcc-ng          conda-forge/linux-64::libgcc-ng-13.2.0-h77fa898_6
  libgomp            conda-forge/linux-64::libgomp-13.2.0-h77fa898_6
  libsqlite          conda-forge/linux-64::libsqlite-3.45.3-h2797004_0
  libstdcxx-ng       conda-forge/linux-64::libstdcxx-ng-13.2.0-hc0a3c3a_6
  libzlib            conda-forge/linux-64::libzlib-1.2.13-hd590300_5
  ncurses            conda-forge/linux-64::ncurses-6.4.20240210-h59595ed_0
  openssl            conda-forge/linux-64::openssl-1.1.1w-hd590300_0
  pip                conda-forge/noarch::pip-20.1.1-pyh9f0ad1d_0
  python             conda-forge/linux-64::python-2.7.15-h5a48372_1011_cpython
  python_abi         conda-forge/linux-64::python_abi-2.7-1_cp27mu
  readline           conda-forge/linux-64::readline-8.2-h8228510_1
  setuptools         conda-forge/linux-64::setuptools-44.0.0-py27_0
  sqlite             conda-forge/linux-64::sqlite-3.45.3-h2c6b66d_0
  tk                 conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
  wheel              conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0
  zlib               conda-forge/linux-64::zlib-1.2.13-hd590300_5


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.4.0

Please update conda by running

    $ conda update -n base -c defaults conda



# All requested packages already installed.

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.4.0

Please update conda by running

    $ conda update -n base -c defaults conda



## Package Plan ##

  environment location: /var/cache/basilisk/1.16.0/crisprScore/1.8.0/azimuth_basilisk

  added / updated specs:
    - biopython=1.74
    - certifi=2019.11.28
    - cycler=0.10.0
    - futures=3.3.0
    - kiwisolver=1.1.0
    - matplotlib=2.2.3
    - mmtf-python=1.1.2
    - nose=1.3.7
    - numpy=1.11.3
    - olefile=0.46
    - pandas=0.23.4
    - pillow=6.2.1
    - pip=20.1.1
    - pyparsing=2.4.7
    - python-dateutil=2.8.1
    - python[version='2.7.*,2.7.*']
    - pytz=2020.1
    - reportlab=3.5.42
    - scipy=1.2.1
    - setuptools=44.0.0
    - six=1.15.0
    - subprocess32=3.5.4
    - tornado=5.1.1
    - wheel=0.36.2


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    backports-1.0              |     pyhd8ed1ab_3           6 KB  conda-forge
    backports.functools_lru_cache-1.6.1|             py_0           8 KB  conda-forge
    backports_abc-0.5          |             py_1           5 KB  conda-forge
    biopython-1.74             |   py27h516909a_0         2.5 MB  conda-forge
    dbus-1.13.6                |       hfdff14a_1         585 KB  conda-forge
    functools32-3.2.3.2        |             py_3          15 KB  conda-forge
    futures-3.3.0              |   py27h8c360ce_1          26 KB  conda-forge
    gettext-0.22.5             |       h59595ed_2         464 KB  conda-forge
    gettext-tools-0.22.5       |       h59595ed_2         2.6 MB  conda-forge
    glib-2.66.3                |       h58526e2_0         500 KB  conda-forge
    gst-plugins-base-1.14.5    |       h0935bb2_2         6.8 MB  conda-forge
    gstreamer-1.14.5           |       h36ae1b5_2         4.5 MB  conda-forge
    icu-58.2                   |    hf484d3e_1000        22.6 MB  conda-forge
    kiwisolver-1.1.0           |   py27h9e3301b_1          88 KB  conda-forge
    libasprintf-0.22.5         |       h661eb56_2          42 KB  conda-forge
    libasprintf-devel-0.22.5   |       h661eb56_2          33 KB  conda-forge
    libblas-3.9.0              |       8_openblas          11 KB  conda-forge
    libcblas-3.9.0             |       8_openblas          11 KB  conda-forge
    libgettextpo-0.22.5        |       h59595ed_2         167 KB  conda-forge
    libgettextpo-devel-0.22.5  |       h59595ed_2          36 KB  conda-forge
    libgfortran-ng-7.5.0       |      h14aa051_20          23 KB  conda-forge
    libgfortran4-7.5.0         |      h14aa051_20         1.2 MB  conda-forge
    libglib-2.66.3             |       hbe7bbb4_0         3.0 MB  conda-forge
    liblapack-3.9.0            |       8_openblas          11 KB  conda-forge
    libopenblas-0.3.12         |pthreads_hb3c22a3_1         8.2 MB  conda-forge
    libxcb-1.16                |       hd590300_0         386 KB  conda-forge
    libxml2-2.9.9              |       h13577e0_2         1.3 MB  conda-forge
    matplotlib-2.2.3           |   py27h8a2030e_1           7 KB  conda-forge
    matplotlib-base-2.2.3      |   py27h60b886d_1         6.4 MB  conda-forge
    mmtf-python-1.1.2          |             py_0          21 KB  conda-forge
    msgpack-python-1.0.0       |   py27h9e3301b_1          28 KB  conda-forge
    nose-1.3.7                 |py27h8c360ce_1004         216 KB  conda-forge
    numpy-1.11.3               |py27he5ce36f_1207         3.6 MB  conda-forge
    pandas-0.23.4              |py27h637b7d7_1000         9.8 MB  conda-forge
    pcre-8.45                  |       h9c3ff4c_0         253 KB  conda-forge
    pillow-6.2.1               |   py27hd70f55b_1         625 KB  conda-forge
    pyparsing-2.4.7            |     pyh9f0ad1d_0          60 KB  conda-forge
    pyqt-5.6.0                 |py27h13b7fb3_1008         5.2 MB  conda-forge
    qt-5.6.3                   |       h8bf5577_3        36.4 MB
    reportlab-3.5.42           |   py27heca39a3_0         2.4 MB  conda-forge
    scipy-1.2.1                |   py27h09a28d5_1        18.1 MB  conda-forge
    singledispatch-3.6.1       |     pyh44b312d_0          12 KB  conda-forge
    sip-4.18.1                 |py27hf484d3e_1000         278 KB  conda-forge
    subprocess32-3.5.4         |   py27h516909a_0          46 KB  conda-forge
    tornado-5.1.1              |py27h14c3975_1000         642 KB  conda-forge
    wheel-0.36.2               |     pyhd3deb0d_0          31 KB  conda-forge
    zstd-1.5.6                 |       ha6fb4c9_0         542 KB  conda-forge
    ------------------------------------------------------------
                                           Total:       139.6 MB

The following NEW packages will be INSTALLED:

  backports          conda-forge/noarch::backports-1.0-pyhd8ed1ab_3
  backports.functoo~ conda-forge/noarch::backports.functools_lru_cache-1.6.1-py_0
  backports_abc      conda-forge/noarch::backports_abc-0.5-py_1
  biopython          conda-forge/linux-64::biopython-1.74-py27h516909a_0
  cycler             conda-forge/noarch::cycler-0.10.0-py_2
  dbus               conda-forge/linux-64::dbus-1.13.6-hfdff14a_1
  expat              conda-forge/linux-64::expat-2.6.2-h59595ed_0
  fontconfig         conda-forge/linux-64::fontconfig-2.14.2-h14ed4e7_0
  freetype           conda-forge/linux-64::freetype-2.12.1-h267a509_2
  functools32        conda-forge/noarch::functools32-3.2.3.2-py_3
  futures            conda-forge/linux-64::futures-3.3.0-py27h8c360ce_1
  gettext            conda-forge/linux-64::gettext-0.22.5-h59595ed_2
  gettext-tools      conda-forge/linux-64::gettext-tools-0.22.5-h59595ed_2
  glib               conda-forge/linux-64::glib-2.66.3-h58526e2_0
  gst-plugins-base   conda-forge/linux-64::gst-plugins-base-1.14.5-h0935bb2_2
  gstreamer          conda-forge/linux-64::gstreamer-1.14.5-h36ae1b5_2
  icu                conda-forge/linux-64::icu-58.2-hf484d3e_1000
  jpeg               conda-forge/linux-64::jpeg-9e-h0b41bf4_3
  kiwisolver         conda-forge/linux-64::kiwisolver-1.1.0-py27h9e3301b_1
  libasprintf        conda-forge/linux-64::libasprintf-0.22.5-h661eb56_2
  libasprintf-devel  conda-forge/linux-64::libasprintf-devel-0.22.5-h661eb56_2
  libblas            conda-forge/linux-64::libblas-3.9.0-8_openblas
  libcblas           conda-forge/linux-64::libcblas-3.9.0-8_openblas
  libexpat           conda-forge/linux-64::libexpat-2.6.2-h59595ed_0
  libgettextpo       conda-forge/linux-64::libgettextpo-0.22.5-h59595ed_2
  libgettextpo-devel conda-forge/linux-64::libgettextpo-devel-0.22.5-h59595ed_2
  libgfortran-ng     conda-forge/linux-64::libgfortran-ng-7.5.0-h14aa051_20
  libgfortran4       conda-forge/linux-64::libgfortran4-7.5.0-h14aa051_20
  libglib            conda-forge/linux-64::libglib-2.66.3-hbe7bbb4_0
  libiconv           conda-forge/linux-64::libiconv-1.17-hd590300_2
  liblapack          conda-forge/linux-64::liblapack-3.9.0-8_openblas
  libopenblas        conda-forge/linux-64::libopenblas-0.3.12-pthreads_hb3c22a3_1
  libpng             conda-forge/linux-64::libpng-1.6.43-h2797004_0
  libtiff            conda-forge/linux-64::libtiff-4.2.0-hf544144_3
  libuuid            conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
  libwebp-base       conda-forge/linux-64::libwebp-base-1.4.0-hd590300_0
  libxcb             conda-forge/linux-64::libxcb-1.16-hd590300_0
  libxml2            conda-forge/linux-64::libxml2-2.9.9-h13577e0_2
  matplotlib         conda-forge/linux-64::matplotlib-2.2.3-py27h8a2030e_1
  matplotlib-base    conda-forge/linux-64::matplotlib-base-2.2.3-py27h60b886d_1
  mmtf-python        conda-forge/noarch::mmtf-python-1.1.2-py_0
  msgpack-python     conda-forge/linux-64::msgpack-python-1.0.0-py27h9e3301b_1
  nose               conda-forge/linux-64::nose-1.3.7-py27h8c360ce_1004
  numpy              conda-forge/linux-64::numpy-1.11.3-py27he5ce36f_1207
  olefile            conda-forge/noarch::olefile-0.46-pyh9f0ad1d_1
  pandas             conda-forge/linux-64::pandas-0.23.4-py27h637b7d7_1000
  pcre               conda-forge/linux-64::pcre-8.45-h9c3ff4c_0
  pillow             conda-forge/linux-64::pillow-6.2.1-py27hd70f55b_1
  pthread-stubs      conda-forge/linux-64::pthread-stubs-0.4-h36c2ea0_1001
  pyparsing          conda-forge/noarch::pyparsing-2.4.7-pyh9f0ad1d_0
  pyqt               conda-forge/linux-64::pyqt-5.6.0-py27h13b7fb3_1008
  python-dateutil    conda-forge/noarch::python-dateutil-2.8.1-py_0
  pytz               conda-forge/noarch::pytz-2020.1-pyh9f0ad1d_0
  qt                 pkgs/main/linux-64::qt-5.6.3-h8bf5577_3
  reportlab          conda-forge/linux-64::reportlab-3.5.42-py27heca39a3_0
  scipy              conda-forge/linux-64::scipy-1.2.1-py27h09a28d5_1
  singledispatch     conda-forge/noarch::singledispatch-3.6.1-pyh44b312d_0
  sip                conda-forge/linux-64::sip-4.18.1-py27hf484d3e_1000
  six                conda-forge/noarch::six-1.15.0-pyh9f0ad1d_0
  subprocess32       conda-forge/linux-64::subprocess32-3.5.4-py27h516909a_0
  tornado            conda-forge/linux-64::tornado-5.1.1-py27h14c3975_1000
  xorg-libxau        conda-forge/linux-64::xorg-libxau-1.0.11-hd590300_0
  xorg-libxdmcp      conda-forge/linux-64::xorg-libxdmcp-1.1.3-h7f98852_0
  xz                 conda-forge/linux-64::xz-5.2.6-h166bdaf_0
  zstd               conda-forge/linux-64::zstd-1.5.6-ha6fb4c9_0

The following packages will be DOWNGRADED:

  wheel                                 0.37.1-pyhd8ed1ab_0 --> 0.36.2-pyhd3deb0d_0



Downloading and Extracting Packages

libgfortran-ng-7.5.0 | 23 KB     |            |   0% 
libgfortran-ng-7.5.0 | 23 KB     | ######9    |  70% 
libgfortran-ng-7.5.0 | 23 KB     | ########## | 100% 

libxml2-2.9.9        | 1.3 MB    |            |   0% 
libxml2-2.9.9        | 1.3 MB    | #3         |  13% 
libxml2-2.9.9        | 1.3 MB    | ########## | 100% 
libxml2-2.9.9        | 1.3 MB    | ########## | 100% 

libgettextpo-0.22.5  | 167 KB    |            |   0% 
libgettextpo-0.22.5  | 167 KB    | ########## | 100% 
libgettextpo-0.22.5  | 167 KB    | ########## | 100% 

liblapack-3.9.0      | 11 KB     |            |   0% 
liblapack-3.9.0      | 11 KB     | ########## | 100% 

gstreamer-1.14.5     | 4.5 MB    |            |   0% 
gstreamer-1.14.5     | 4.5 MB    | #8         |  19% 
gstreamer-1.14.5     | 4.5 MB    | #####8     |  58% 
gstreamer-1.14.5     | 4.5 MB    | #########4 |  95% 
gstreamer-1.14.5     | 4.5 MB    | ########## | 100% 

backports_abc-0.5    | 5 KB      |            |   0% 
backports_abc-0.5    | 5 KB      | ########## | 100% 

dbus-1.13.6          | 585 KB    |            |   0% 
dbus-1.13.6          | 585 KB    | ########## | 100% 
dbus-1.13.6          | 585 KB    | ########## | 100% 

msgpack-python-1.0.0 | 28 KB     |            |   0% 
msgpack-python-1.0.0 | 28 KB     | ########## | 100% 

subprocess32-3.5.4   | 46 KB     |            |   0% 
subprocess32-3.5.4   | 46 KB     | ########## | 100% 

pandas-0.23.4        | 9.8 MB    |            |   0% 
pandas-0.23.4        | 9.8 MB    | 5          |   5% 
pandas-0.23.4        | 9.8 MB    | ##2        |  23% 
pandas-0.23.4        | 9.8 MB    | ####       |  41% 
pandas-0.23.4        | 9.8 MB    | #####8     |  58% 
pandas-0.23.4        | 9.8 MB    | #######5   |  76% 
pandas-0.23.4        | 9.8 MB    | #########3 |  93% 
pandas-0.23.4        | 9.8 MB    | ########## | 100% 

pyqt-5.6.0           | 5.2 MB    |            |   0% 
pyqt-5.6.0           | 5.2 MB    | #1         |  12% 
pyqt-5.6.0           | 5.2 MB    | ####5      |  46% 
pyqt-5.6.0           | 5.2 MB    | #######7   |  78% 
pyqt-5.6.0           | 5.2 MB    | ########## | 100% 

pcre-8.45            | 253 KB    |            |   0% 
pcre-8.45            | 253 KB    | ########## | 100% 
pcre-8.45            | 253 KB    | ########## | 100% 

icu-58.2             | 22.6 MB   |            |   0% 
icu-58.2             | 22.6 MB   | 4          |   5% 
icu-58.2             | 22.6 MB   | #2         |  13% 
icu-58.2             | 22.6 MB   | ##         |  20% 
icu-58.2             | 22.6 MB   | ##8        |  28% 
icu-58.2             | 22.6 MB   | ###5       |  36% 
icu-58.2             | 22.6 MB   | ####3      |  44% 
icu-58.2             | 22.6 MB   | #####1     |  51% 
icu-58.2             | 22.6 MB   | #####8     |  59% 
icu-58.2             | 22.6 MB   | ######6    |  67% 
icu-58.2             | 22.6 MB   | #######4   |  74% 
icu-58.2             | 22.6 MB   | ########1  |  82% 
icu-58.2             | 22.6 MB   | ########9  |  90% 
icu-58.2             | 22.6 MB   | #########7 |  97% 
icu-58.2             | 22.6 MB   | ########## | 100% 

futures-3.3.0        | 26 KB     |            |   0% 
futures-3.3.0        | 26 KB     | ########## | 100% 

scipy-1.2.1          | 18.1 MB   |            |   0% 
scipy-1.2.1          | 18.1 MB   | 4          |   5% 
scipy-1.2.1          | 18.1 MB   | #3         |  14% 
scipy-1.2.1          | 18.1 MB   | ##3        |  23% 
scipy-1.2.1          | 18.1 MB   | ###2       |  33% 
scipy-1.2.1          | 18.1 MB   | ####2      |  42% 
scipy-1.2.1          | 18.1 MB   | #####1     |  51% 
scipy-1.2.1          | 18.1 MB   | ######     |  60% 
scipy-1.2.1          | 18.1 MB   | ######9    |  70% 
scipy-1.2.1          | 18.1 MB   | #######9   |  80% 
scipy-1.2.1          | 18.1 MB   | ########8  |  89% 
scipy-1.2.1          | 18.1 MB   | #########8 |  98% 
scipy-1.2.1          | 18.1 MB   | ########## | 100% 

glib-2.66.3          | 500 KB    |            |   0% 
glib-2.66.3          | 500 KB    | ##8        |  29% 
glib-2.66.3          | 500 KB    | #####7     |  58% 
glib-2.66.3          | 500 KB    | ########## | 100% 
glib-2.66.3          | 500 KB    | ########## | 100% 

libxcb-1.16          | 386 KB    |            |   0% 
libxcb-1.16          | 386 KB    | ########## | 100% 
libxcb-1.16          | 386 KB    | ########## | 100% 

reportlab-3.5.42     | 2.4 MB    |            |   0% 
reportlab-3.5.42     | 2.4 MB    | ###7       |  38% 
reportlab-3.5.42     | 2.4 MB    | #########9 |  99% 
reportlab-3.5.42     | 2.4 MB    | ########## | 100% 

libasprintf-0.22.5   | 42 KB     |            |   0% 
libasprintf-0.22.5   | 42 KB     | ########## | 100% 
libasprintf-0.22.5   | 42 KB     | ########## | 100% 

libblas-3.9.0        | 11 KB     |            |   0% 
libblas-3.9.0        | 11 KB     | ########## | 100% 

backports-1.0        | 6 KB      |            |   0% 
backports-1.0        | 6 KB      | ########## | 100% 
backports-1.0        | 6 KB      | ########## | 100% 

libgfortran4-7.5.0   | 1.2 MB    |            |   0% 
libgfortran4-7.5.0   | 1.2 MB    | ######5    |  65% 
libgfortran4-7.5.0   | 1.2 MB    | ########## | 100% 

biopython-1.74       | 2.5 MB    |            |   0% 
biopython-1.74       | 2.5 MB    | ##5        |  26% 
biopython-1.74       | 2.5 MB    | #########4 |  95% 
biopython-1.74       | 2.5 MB    | ########## | 100% 

qt-5.6.3             | 36.4 MB   |            |   0% 
qt-5.6.3             | 36.4 MB   |            |   0% 
qt-5.6.3             | 36.4 MB   |            |   0% 
qt-5.6.3             | 36.4 MB   |            |   1% 
qt-5.6.3             | 36.4 MB   | 1          |   1% 
qt-5.6.3             | 36.4 MB   | 2          |   2% 
qt-5.6.3             | 36.4 MB   | 4          |   4% 
qt-5.6.3             | 36.4 MB   | 5          |   6% 
qt-5.6.3             | 36.4 MB   | 7          |   8% 
qt-5.6.3             | 36.4 MB   | 9          |   9% 
qt-5.6.3             | 36.4 MB   | #1         |  11% 
qt-5.6.3             | 36.4 MB   | #2         |  13% 
qt-5.6.3             | 36.4 MB   | #4         |  15% 
qt-5.6.3             | 36.4 MB   | #6         |  16% 
qt-5.6.3             | 36.4 MB   | #8         |  18% 
qt-5.6.3             | 36.4 MB   | #9         |  20% 
qt-5.6.3             | 36.4 MB   | ##1        |  22% 
qt-5.6.3             | 36.4 MB   | ##3        |  23% 
qt-5.6.3             | 36.4 MB   | ##5        |  25% 
qt-5.6.3             | 36.4 MB   | ##6        |  27% 
qt-5.6.3             | 36.4 MB   | ##8        |  29% 
qt-5.6.3             | 36.4 MB   | ###        |  30% 
qt-5.6.3             | 36.4 MB   | ###2       |  32% 
qt-5.6.3             | 36.4 MB   | ###3       |  34% 
qt-5.6.3             | 36.4 MB   | ###5       |  36% 
qt-5.6.3             | 36.4 MB   | ###7       |  37% 
qt-5.6.3             | 36.4 MB   | ###9       |  39% 
qt-5.6.3             | 36.4 MB   | ####       |  41% 
qt-5.6.3             | 36.4 MB   | ####2      |  43% 
qt-5.6.3             | 36.4 MB   | ####4      |  45% 
qt-5.6.3             | 36.4 MB   | ####6      |  46% 
qt-5.6.3             | 36.4 MB   | ####8      |  48% 
qt-5.6.3             | 36.4 MB   | ####9      |  50% 
qt-5.6.3             | 36.4 MB   | #####1     |  52% 
qt-5.6.3             | 36.4 MB   | #####3     |  53% 
qt-5.6.3             | 36.4 MB   | #####5     |  55% 
qt-5.6.3             | 36.4 MB   | #####6     |  57% 
qt-5.6.3             | 36.4 MB   | #####8     |  59% 
qt-5.6.3             | 36.4 MB   | ######     |  60% 
qt-5.6.3             | 36.4 MB   | ######2    |  62% 
qt-5.6.3             | 36.4 MB   | ######3    |  64% 
qt-5.6.3             | 36.4 MB   | ######5    |  66% 
qt-5.6.3             | 36.4 MB   | ######7    |  67% 
qt-5.6.3             | 36.4 MB   | ######9    |  69% 
qt-5.6.3             | 36.4 MB   | #######    |  71% 
qt-5.6.3             | 36.4 MB   | #######2   |  73% 
qt-5.6.3             | 36.4 MB   | #######4   |  74% 
qt-5.6.3             | 36.4 MB   | #######6   |  76% 
qt-5.6.3             | 36.4 MB   | #######7   |  78% 
qt-5.6.3             | 36.4 MB   | #######9   |  80% 
qt-5.6.3             | 36.4 MB   | ########1  |  81% 
qt-5.6.3             | 36.4 MB   | ########3  |  83% 
qt-5.6.3             | 36.4 MB   | ########4  |  85% 
qt-5.6.3             | 36.4 MB   | ########6  |  87% 
qt-5.6.3             | 36.4 MB   | ########8  |  88% 
qt-5.6.3             | 36.4 MB   | #########  |  90% 
qt-5.6.3             | 36.4 MB   | #########1 |  92% 
qt-5.6.3             | 36.4 MB   | #########3 |  94% 
qt-5.6.3             | 36.4 MB   | #########5 |  95% 
qt-5.6.3             | 36.4 MB   | #########7 |  97% 
qt-5.6.3             | 36.4 MB   | #########8 |  99% 
qt-5.6.3             | 36.4 MB   | ########## | 100% 

gettext-tools-0.22.5 | 2.6 MB    |            |   0% 
gettext-tools-0.22.5 | 2.6 MB    | ####1      |  41% 
gettext-tools-0.22.5 | 2.6 MB    | ########## | 100% 
gettext-tools-0.22.5 | 2.6 MB    | ########## | 100% 

gettext-0.22.5       | 464 KB    |            |   0% 
gettext-0.22.5       | 464 KB    | ########## | 100% 
gettext-0.22.5       | 464 KB    | ########## | 100% 

mmtf-python-1.1.2    | 21 KB     |            |   0% 
mmtf-python-1.1.2    | 21 KB     | ########## | 100% 

singledispatch-3.6.1 | 12 KB     |            |   0% 
singledispatch-3.6.1 | 12 KB     | ########## | 100% 

tornado-5.1.1        | 642 KB    |            |   0% 
tornado-5.1.1        | 642 KB    | ########## | 100% 
tornado-5.1.1        | 642 KB    | ########## | 100% 

gst-plugins-base-1.1 | 6.8 MB    |            |   0% 
gst-plugins-base-1.1 | 6.8 MB    | #2         |  12% 
gst-plugins-base-1.1 | 6.8 MB    | ###7       |  37% 
gst-plugins-base-1.1 | 6.8 MB    | ######2    |  63% 
gst-plugins-base-1.1 | 6.8 MB    | ########8  |  88% 
gst-plugins-base-1.1 | 6.8 MB    | ########## | 100% 

matplotlib-base-2.2. | 6.4 MB    |            |   0% 
matplotlib-base-2.2. | 6.4 MB    | #2         |  12% 
matplotlib-base-2.2. | 6.4 MB    | ###9       |  39% 
matplotlib-base-2.2. | 6.4 MB    | ######5    |  66% 
matplotlib-base-2.2. | 6.4 MB    | #########1 |  91% 
matplotlib-base-2.2. | 6.4 MB    | ########## | 100% 

numpy-1.11.3         | 3.6 MB    |            |   0% 
numpy-1.11.3         | 3.6 MB    | #8         |  18% 
numpy-1.11.3         | 3.6 MB    | ######     |  61% 
numpy-1.11.3         | 3.6 MB    | ########## | 100% 
numpy-1.11.3         | 3.6 MB    | ########## | 100% 

matplotlib-2.2.3     | 7 KB      |            |   0% 
matplotlib-2.2.3     | 7 KB      | ########## | 100% 

libasprintf-devel-0. | 33 KB     |            |   0% 
libasprintf-devel-0. | 33 KB     | ########## | 100% 
libasprintf-devel-0. | 33 KB     | ########## | 100% 

libgettextpo-devel-0 | 36 KB     |            |   0% 
libgettextpo-devel-0 | 36 KB     | ########## | 100% 
libgettextpo-devel-0 | 36 KB     | ########## | 100% 

zstd-1.5.6           | 542 KB    |            |   0% 
zstd-1.5.6           | 542 KB    | ########## | 100% 
zstd-1.5.6           | 542 KB    | ########## | 100% 

functools32-3.2.3.2  | 15 KB     |            |   0% 
functools32-3.2.3.2  | 15 KB     | ########## | 100% 

libcblas-3.9.0       | 11 KB     |            |   0% 
libcblas-3.9.0       | 11 KB     | ########## | 100% 

kiwisolver-1.1.0     | 88 KB     |            |   0% 
kiwisolver-1.1.0     | 88 KB     | ########## | 100% 

libglib-2.66.3       | 3.0 MB    |            |   0% 
libglib-2.66.3       | 3.0 MB    | ###4       |  34% 
libglib-2.66.3       | 3.0 MB    | #########1 |  92% 
libglib-2.66.3       | 3.0 MB    | ########## | 100% 

sip-4.18.1           | 278 KB    |            |   0% 
sip-4.18.1           | 278 KB    | ########## | 100% 
sip-4.18.1           | 278 KB    | ########## | 100% 

wheel-0.36.2         | 31 KB     |            |   0% 
wheel-0.36.2         | 31 KB     | ########## | 100% 

pillow-6.2.1         | 625 KB    |            |   0% 
pillow-6.2.1         | 625 KB    | ########## | 100% 
pillow-6.2.1         | 625 KB    | ########## | 100% 

libopenblas-0.3.12   | 8.2 MB    |            |   0% 
libopenblas-0.3.12   | 8.2 MB    | #2         |  13% 
libopenblas-0.3.12   | 8.2 MB    | ###        |  30% 
libopenblas-0.3.12   | 8.2 MB    | #####1     |  52% 
libopenblas-0.3.12   | 8.2 MB    | #######2   |  73% 
libopenblas-0.3.12   | 8.2 MB    | #########3 |  94% 
libopenblas-0.3.12   | 8.2 MB    | ########## | 100% 

backports.functools_ | 8 KB      |            |   0% 
backports.functools_ | 8 KB      | ########## | 100% 

pyparsing-2.4.7      | 60 KB     |            |   0% 
pyparsing-2.4.7      | 60 KB     | ########## | 100% 

nose-1.3.7           | 216 KB    |            |   0% 
nose-1.3.7           | 216 KB    | ########## | 100% 
nose-1.3.7           | 216 KB    | ########## | 100% 
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. pip 21.0 will drop support for Python 2.7 in January 2021. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support
Collecting scikit-learn==0.17.1
  Using cached scikit_learn-0.17.1-cp27-cp27mu-manylinux1_x86_64.whl (17.6 MB)
Installing collected packages: scikit-learn
Successfully installed scikit-learn-0.17.1
DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. pip 21.0 will drop support for Python 2.7 in January 2021. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support
Processing /home/biocbuild/bbs-3.19-bioc-longtests/meat/crisprScore.Rcheck/crisprScore/python/azimuth
Requirement already satisfied: scipy<=1.2.1 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/azimuth_basilisk/lib/python2.7/site-packages (from Azimuth==2.0) (1.2.1)
Requirement already satisfied: numpy<=1.14 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/azimuth_basilisk/lib/python2.7/site-packages (from Azimuth==2.0) (1.11.3)
Requirement already satisfied: matplotlib in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/azimuth_basilisk/lib/python2.7/site-packages (from Azimuth==2.0) (2.2.3)
Requirement already satisfied: nose in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/azimuth_basilisk/lib/python2.7/site-packages (from Azimuth==2.0) (1.3.7)
Requirement already satisfied: scikit-learn<0.18,>=0.17.1 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/azimuth_basilisk/lib/python2.7/site-packages (from Azimuth==2.0) (0.17.1)
Requirement already satisfied: pandas in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/azimuth_basilisk/lib/python2.7/site-packages (from Azimuth==2.0) (0.23.4)
Requirement already satisfied: biopython<=1.76 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/azimuth_basilisk/lib/python2.7/site-packages (from Azimuth==2.0) (1.74)
Requirement already satisfied: cycler>=0.10 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/azimuth_basilisk/lib/python2.7/site-packages (from matplotlib->Azimuth==2.0) (0.10.0)
Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/azimuth_basilisk/lib/python2.7/site-packages (from matplotlib->Azimuth==2.0) (2.4.7)
Requirement already satisfied: python-dateutil>=2.1 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/azimuth_basilisk/lib/python2.7/site-packages (from matplotlib->Azimuth==2.0) (2.8.1)
Requirement already satisfied: pytz in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/azimuth_basilisk/lib/python2.7/site-packages (from matplotlib->Azimuth==2.0) (2020.1)
Requirement already satisfied: six>=1.10 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/azimuth_basilisk/lib/python2.7/site-packages (from matplotlib->Azimuth==2.0) (1.15.0)
Requirement already satisfied: kiwisolver>=1.0.1 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/azimuth_basilisk/lib/python2.7/site-packages (from matplotlib->Azimuth==2.0) (1.1.0)
Requirement already satisfied: backports.functools_lru_cache in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/azimuth_basilisk/lib/python2.7/site-packages (from matplotlib->Azimuth==2.0) (1.6.1)
Requirement already satisfied: subprocess32 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/azimuth_basilisk/lib/python2.7/site-packages (from matplotlib->Azimuth==2.0) (3.5.4)
Requirement already satisfied: setuptools in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/azimuth_basilisk/lib/python2.7/site-packages (from kiwisolver>=1.0.1->matplotlib->Azimuth==2.0) (44.0.0.post20200102)
Building wheels for collected packages: Azimuth
  Building wheel for Azimuth (setup.py): started
  Building wheel for Azimuth (setup.py): finished with status 'done'
  Created wheel for Azimuth: filename=Azimuth-2.0-py2-none-any.whl size=163884 sha256=730e8e037fc220d124121b7d8447856e9f8ec990135da592235d44cebcd407e0
  Stored in directory: /tmp/pip-ephem-wheel-cache-9CrYnK/wheels/4b/7d/4c/495b40dc8d98aa4c4eb18d19e9c9ada022bed6d3fadf6b1e79
Successfully built Azimuth
Installing collected packages: Azimuth
Successfully installed Azimuth-2.0
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deepcpf1_basilisk

  added / updated specs:
    - python=2.7


The following NEW packages will be INSTALLED:

  _libgcc_mutex      conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
  _openmp_mutex      conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
  ca-certificates    conda-forge/linux-64::ca-certificates-2024.2.2-hbcca054_0
  certifi            conda-forge/linux-64::certifi-2019.11.28-py27h8c360ce_1
  ld_impl_linux-64   conda-forge/linux-64::ld_impl_linux-64-2.40-h55db66e_0
  libffi             conda-forge/linux-64::libffi-3.2.1-he1b5a44_1007
  libgcc-ng          conda-forge/linux-64::libgcc-ng-13.2.0-h77fa898_6
  libgomp            conda-forge/linux-64::libgomp-13.2.0-h77fa898_6
  libsqlite          conda-forge/linux-64::libsqlite-3.45.3-h2797004_0
  libstdcxx-ng       conda-forge/linux-64::libstdcxx-ng-13.2.0-hc0a3c3a_6
  libzlib            conda-forge/linux-64::libzlib-1.2.13-hd590300_5
  ncurses            conda-forge/linux-64::ncurses-6.4.20240210-h59595ed_0
  openssl            conda-forge/linux-64::openssl-1.1.1w-hd590300_0
  pip                conda-forge/noarch::pip-20.1.1-pyh9f0ad1d_0
  python             conda-forge/linux-64::python-2.7.15-h5a48372_1011_cpython
  python_abi         conda-forge/linux-64::python_abi-2.7-1_cp27mu
  readline           conda-forge/linux-64::readline-8.2-h8228510_1
  setuptools         conda-forge/linux-64::setuptools-44.0.0-py27_0
  sqlite             conda-forge/linux-64::sqlite-3.45.3-h2c6b66d_0
  tk                 conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
  wheel              conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0
  zlib               conda-forge/linux-64::zlib-1.2.13-hd590300_5


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.4.0

Please update conda by running

    $ conda update -n base -c defaults conda



# All requested packages already installed.

Collecting package metadata (current_repodata.json): ...working... WARNING conda.models.version:get_matcher(535): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.7.1.*, but conda is ignoring the .* and treating it as 1.7.1
done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... WARNING conda.models.version:get_matcher(535): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.8.0.*, but conda is ignoring the .* and treating it as 1.8.0
WARNING conda.models.version:get_matcher(535): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.9.0.*, but conda is ignoring the .* and treating it as 1.9.0
WARNING conda.models.version:get_matcher(535): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.6.0.*, but conda is ignoring the .* and treating it as 1.6.0
done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.4.0

Please update conda by running

    $ conda update -n base -c defaults conda



## Package Plan ##

  environment location: /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deepcpf1_basilisk

  added / updated specs:
    - funcsigs=1.0.2
    - h5py=2.10.0
    - keras=2.1.5
    - linecache2=1.0.0
    - mako=1.1.4
    - markupsafe=1.1.1
    - mock=3.0.5
    - numpy=1.16.5
    - pip=20.1.1
    - protobuf=3.11.4
    - pygpu=0.7.6
    - python[version='2.7.*,2.7.*']
    - pyyaml=5.3.1
    - scipy=1.2.1
    - setuptools=44.0.0
    - six=1.15.0
    - tensorflow=1.0.0
    - theano=1.0.1
    - traceback2=1.4.0
    - unittest2=1.1.0
    - wheel=0.36.2


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    funcsigs-1.0.2             |             py_3          14 KB  conda-forge
    h5py-2.10.0                |nompi_py27h513d04c_102         1.1 MB  conda-forge
    hdf5-1.10.5                |nompi_h3c11f04_1104         3.1 MB  conda-forge
    keras-2.1.5                |           py27_0         491 KB  conda-forge
    libgpuarray-0.7.6          |    h7f98852_1003         245 KB  conda-forge
    libprotobuf-3.11.4         |       h8b12597_0         4.8 MB  conda-forge
    linecache2-1.0.0           |             py_1          13 KB  conda-forge
    mako-1.1.4                 |     pyh44b312d_0          58 KB  conda-forge
    markupsafe-1.1.1           |   py27hdf8410d_1          26 KB  conda-forge
    mock-3.0.5                 |   py27h8c360ce_1          44 KB  conda-forge
    numpy-1.16.5               |   py27h95a1406_0         4.3 MB  conda-forge
    protobuf-3.11.4            |   py27he1b5a44_0         696 KB  conda-forge
    pygpu-0.7.6                |py27hc1659b7_1000         667 KB  conda-forge
    pyyaml-5.3.1               |   py27hdf8410d_0         174 KB  conda-forge
    scipy-1.2.1                |   py27h921218d_2        18.4 MB  conda-forge
    tensorflow-1.0.0           |           py27_0        34.9 MB  conda-forge
    theano-1.0.1               |           py27_1         3.6 MB  conda-forge
    traceback2-1.4.0           |           py27_0          28 KB  conda-forge
    unittest2-1.1.0            |             py_0          68 KB  conda-forge
    ------------------------------------------------------------
                                           Total:        72.7 MB

The following NEW packages will be INSTALLED:

  funcsigs           conda-forge/noarch::funcsigs-1.0.2-py_3
  h5py               conda-forge/linux-64::h5py-2.10.0-nompi_py27h513d04c_102
  hdf5               conda-forge/linux-64::hdf5-1.10.5-nompi_h3c11f04_1104
  keras              conda-forge/linux-64::keras-2.1.5-py27_0
  libblas            conda-forge/linux-64::libblas-3.9.0-8_openblas
  libcblas           conda-forge/linux-64::libcblas-3.9.0-8_openblas
  libgfortran-ng     conda-forge/linux-64::libgfortran-ng-7.5.0-h14aa051_20
  libgfortran4       conda-forge/linux-64::libgfortran4-7.5.0-h14aa051_20
  libgpuarray        conda-forge/linux-64::libgpuarray-0.7.6-h7f98852_1003
  liblapack          conda-forge/linux-64::liblapack-3.9.0-8_openblas
  libopenblas        conda-forge/linux-64::libopenblas-0.3.12-pthreads_hb3c22a3_1
  libprotobuf        conda-forge/linux-64::libprotobuf-3.11.4-h8b12597_0
  linecache2         conda-forge/noarch::linecache2-1.0.0-py_1
  mako               conda-forge/noarch::mako-1.1.4-pyh44b312d_0
  markupsafe         conda-forge/linux-64::markupsafe-1.1.1-py27hdf8410d_1
  mock               conda-forge/linux-64::mock-3.0.5-py27h8c360ce_1
  numpy              conda-forge/linux-64::numpy-1.16.5-py27h95a1406_0
  protobuf           conda-forge/linux-64::protobuf-3.11.4-py27he1b5a44_0
  pygpu              conda-forge/linux-64::pygpu-0.7.6-py27hc1659b7_1000
  pyyaml             conda-forge/linux-64::pyyaml-5.3.1-py27hdf8410d_0
  scipy              conda-forge/linux-64::scipy-1.2.1-py27h921218d_2
  six                conda-forge/noarch::six-1.15.0-pyh9f0ad1d_0
  tensorflow         conda-forge/linux-64::tensorflow-1.0.0-py27_0
  theano             conda-forge/linux-64::theano-1.0.1-py27_1
  traceback2         conda-forge/linux-64::traceback2-1.4.0-py27_0
  unittest2          conda-forge/noarch::unittest2-1.1.0-py_0
  yaml               conda-forge/linux-64::yaml-0.2.5-h7f98852_2

The following packages will be DOWNGRADED:

  wheel                                 0.37.1-pyhd8ed1ab_0 --> 0.36.2-pyhd3deb0d_0



Downloading and Extracting Packages

libgpuarray-0.7.6    | 245 KB    |            |   0% 
libgpuarray-0.7.6    | 245 KB    | 6          |   7% 
libgpuarray-0.7.6    | 245 KB    | ########## | 100% 
libgpuarray-0.7.6    | 245 KB    | ########## | 100% 

keras-2.1.5          | 491 KB    |            |   0% 
keras-2.1.5          | 491 KB    | 3          |   3% 
keras-2.1.5          | 491 KB    | ########## | 100% 
keras-2.1.5          | 491 KB    | ########## | 100% 

scipy-1.2.1          | 18.4 MB   |            |   0% 
scipy-1.2.1          | 18.4 MB   | 4          |   5% 
scipy-1.2.1          | 18.4 MB   | #4         |  14% 
scipy-1.2.1          | 18.4 MB   | ##3        |  23% 
scipy-1.2.1          | 18.4 MB   | ###2       |  32% 
scipy-1.2.1          | 18.4 MB   | ####1      |  41% 
scipy-1.2.1          | 18.4 MB   | #####      |  50% 
scipy-1.2.1          | 18.4 MB   | #####9     |  59% 
scipy-1.2.1          | 18.4 MB   | ######8    |  68% 
scipy-1.2.1          | 18.4 MB   | #######7   |  77% 
scipy-1.2.1          | 18.4 MB   | ########6  |  86% 
scipy-1.2.1          | 18.4 MB   | #########5 |  95% 
scipy-1.2.1          | 18.4 MB   | ########## | 100% 

theano-1.0.1         | 3.6 MB    |            |   0% 
theano-1.0.1         | 3.6 MB    | #6         |  17% 
theano-1.0.1         | 3.6 MB    | ######3    |  63% 
theano-1.0.1         | 3.6 MB    | ########## | 100% 
theano-1.0.1         | 3.6 MB    | ########## | 100% 

mock-3.0.5           | 44 KB     |            |   0% 
mock-3.0.5           | 44 KB     | ########## | 100% 

funcsigs-1.0.2       | 14 KB     |            |   0% 
funcsigs-1.0.2       | 14 KB     | ########## | 100% 

h5py-2.10.0          | 1.1 MB    |            |   0% 
h5py-2.10.0          | 1.1 MB    | ########   |  80% 
h5py-2.10.0          | 1.1 MB    | ########## | 100% 

hdf5-1.10.5          | 3.1 MB    |            |   0% 
hdf5-1.10.5          | 3.1 MB    | ##2        |  22% 
hdf5-1.10.5          | 3.1 MB    | #######7   |  77% 
hdf5-1.10.5          | 3.1 MB    | ########## | 100% 

libprotobuf-3.11.4   | 4.8 MB    |            |   0% 
libprotobuf-3.11.4   | 4.8 MB    | 6          |   6% 
libprotobuf-3.11.4   | 4.8 MB    | ####       |  40% 
libprotobuf-3.11.4   | 4.8 MB    | #######4   |  75% 
libprotobuf-3.11.4   | 4.8 MB    | ########## | 100% 

mako-1.1.4           | 58 KB     |            |   0% 
mako-1.1.4           | 58 KB     | ########## | 100% 

pygpu-0.7.6          | 667 KB    |            |   0% 
pygpu-0.7.6          | 667 KB    | 7          |   7% 
pygpu-0.7.6          | 667 KB    | ########## | 100% 
pygpu-0.7.6          | 667 KB    | ########## | 100% 

protobuf-3.11.4      | 696 KB    |            |   0% 
protobuf-3.11.4      | 696 KB    | #########4 |  94% 
protobuf-3.11.4      | 696 KB    | ########## | 100% 

pyyaml-5.3.1         | 174 KB    |            |   0% 
pyyaml-5.3.1         | 174 KB    | ########## | 100% 
pyyaml-5.3.1         | 174 KB    | ########## | 100% 

unittest2-1.1.0      | 68 KB     |            |   0% 
unittest2-1.1.0      | 68 KB     | ########## | 100% 

traceback2-1.4.0     | 28 KB     |            |   0% 
traceback2-1.4.0     | 28 KB     | ########## | 100% 

markupsafe-1.1.1     | 26 KB     |            |   0% 
markupsafe-1.1.1     | 26 KB     | ########## | 100% 

numpy-1.16.5         | 4.3 MB    |            |   0% 
numpy-1.16.5         | 4.3 MB    | #3         |  14% 
numpy-1.16.5         | 4.3 MB    | ####6      |  47% 
numpy-1.16.5         | 4.3 MB    | ########4  |  85% 
numpy-1.16.5         | 4.3 MB    | ########## | 100% 

tensorflow-1.0.0     | 34.9 MB   |            |   0% 
tensorflow-1.0.0     | 34.9 MB   | 2          |   2% 
tensorflow-1.0.0     | 34.9 MB   | 6          |   6% 
tensorflow-1.0.0     | 34.9 MB   | #1         |  11% 
tensorflow-1.0.0     | 34.9 MB   | #5         |  16% 
tensorflow-1.0.0     | 34.9 MB   | ##         |  21% 
tensorflow-1.0.0     | 34.9 MB   | ##5        |  26% 
tensorflow-1.0.0     | 34.9 MB   | ###        |  30% 
tensorflow-1.0.0     | 34.9 MB   | ###4       |  35% 
tensorflow-1.0.0     | 34.9 MB   | ###9       |  39% 
tensorflow-1.0.0     | 34.9 MB   | ####4      |  44% 
tensorflow-1.0.0     | 34.9 MB   | ####8      |  49% 
tensorflow-1.0.0     | 34.9 MB   | #####3     |  54% 
tensorflow-1.0.0     | 34.9 MB   | #####8     |  58% 
tensorflow-1.0.0     | 34.9 MB   | ######3    |  63% 
tensorflow-1.0.0     | 34.9 MB   | ######8    |  68% 
tensorflow-1.0.0     | 34.9 MB   | #######3   |  73% 
tensorflow-1.0.0     | 34.9 MB   | #######7   |  78% 
tensorflow-1.0.0     | 34.9 MB   | ########2  |  83% 
tensorflow-1.0.0     | 34.9 MB   | ########7  |  87% 
tensorflow-1.0.0     | 34.9 MB   | #########2 |  92% 
tensorflow-1.0.0     | 34.9 MB   | #########7 |  97% 
tensorflow-1.0.0     | 34.9 MB   | ########## | 100% 

linecache2-1.0.0     | 13 KB     |            |   0% 
linecache2-1.0.0     | 13 KB     | ########## | 100% 
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. pip 21.0 will drop support for Python 2.7 in January 2021. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support
Processing /home/biocbuild/bbs-3.19-bioc-longtests/meat/crisprScore.Rcheck/crisprScore/python/deepcpf1
Building wheels for collected packages: DeepCpf1
  Building wheel for DeepCpf1 (setup.py): started
  Building wheel for DeepCpf1 (setup.py): finished with status 'done'
  Created wheel for DeepCpf1: filename=DeepCpf1-1.0-py2-none-any.whl size=768630 sha256=c19efaab64b94900936d5648150e2c91fc3f2f5ae378c7f5f288c54e3587cad3
  Stored in directory: /tmp/pip-ephem-wheel-cache-8Tm4CZ/wheels/65/b1/4b/cfd3b913badad8733ef54befa5b6899126bac937eee2270b91
Successfully built DeepCpf1
Installing collected packages: DeepCpf1
Successfully installed DeepCpf1-1.0
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk

  added / updated specs:
    - python=3.6


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    certifi-2016.9.26          |           py36_0         217 KB  conda-forge
    pip-20.0.2                 |           py36_1         1.9 MB  conda-forge
    python-3.6.15              |hb7a2778_0_cpython        38.4 MB  conda-forge
    python_abi-3.6             |          2_cp36m           4 KB  conda-forge
    setuptools-49.6.0          |   py36h5fab9bb_3         936 KB  conda-forge
    wheel-0.34.2               |           py36_0          43 KB  conda-forge
    ------------------------------------------------------------
                                           Total:        41.5 MB

The following NEW packages will be INSTALLED:

  _libgcc_mutex      conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
  _openmp_mutex      conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
  ca-certificates    conda-forge/linux-64::ca-certificates-2024.2.2-hbcca054_0
  certifi            conda-forge/linux-64::certifi-2016.9.26-py36_0
  ld_impl_linux-64   conda-forge/linux-64::ld_impl_linux-64-2.40-h55db66e_0
  libffi             conda-forge/linux-64::libffi-3.4.2-h7f98852_5
  libgcc-ng          conda-forge/linux-64::libgcc-ng-13.2.0-h77fa898_6
  libgomp            conda-forge/linux-64::libgomp-13.2.0-h77fa898_6
  libnsl             conda-forge/linux-64::libnsl-2.0.1-hd590300_0
  libsqlite          conda-forge/linux-64::libsqlite-3.45.3-h2797004_0
  libstdcxx-ng       conda-forge/linux-64::libstdcxx-ng-13.2.0-hc0a3c3a_6
  libzlib            conda-forge/linux-64::libzlib-1.2.13-hd590300_5
  ncurses            conda-forge/linux-64::ncurses-6.4.20240210-h59595ed_0
  openssl            conda-forge/linux-64::openssl-1.1.1w-hd590300_0
  pip                conda-forge/linux-64::pip-20.0.2-py36_1
  python             conda-forge/linux-64::python-3.6.15-hb7a2778_0_cpython
  python_abi         conda-forge/linux-64::python_abi-3.6-2_cp36m
  readline           conda-forge/linux-64::readline-8.2-h8228510_1
  setuptools         conda-forge/linux-64::setuptools-49.6.0-py36h5fab9bb_3
  sqlite             conda-forge/linux-64::sqlite-3.45.3-h2c6b66d_0
  tk                 conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
  wheel              conda-forge/linux-64::wheel-0.34.2-py36_0
  xz                 conda-forge/linux-64::xz-5.2.6-h166bdaf_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.4.0

Please update conda by running

    $ conda update -n base -c defaults conda



# All requested packages already installed.

Collecting package metadata (current_repodata.json): ...working... WARNING conda.models.version:get_matcher(535): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.7.1.*, but conda is ignoring the .* and treating it as 1.7.1
done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... WARNING conda.models.version:get_matcher(535): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.8.0.*, but conda is ignoring the .* and treating it as 1.8.0
WARNING conda.models.version:get_matcher(535): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.9.0.*, but conda is ignoring the .* and treating it as 1.9.0
WARNING conda.models.version:get_matcher(535): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.6.0.*, but conda is ignoring the .* and treating it as 1.6.0
done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.4.0

Please update conda by running

    $ conda update -n base -c defaults conda



## Package Plan ##

  environment location: /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk

  added / updated specs:
    - absl-py=0.12.0
    - astunparse=1.6.3
    - biopython=1.78
    - cachetools=4.2.1
    - certifi=2020.12.5
    - chardet=4.0.0
    - flatbuffers=1.12
    - gast=0.3.3
    - google-auth-oauthlib=0.4.3
    - google-auth=1.27.1
    - google-pasta=0.2.0
    - grpcio=1.32.0
    - h5py=2.10.0
    - idna=2.10
    - importlib-metadata=3.7.2
    - joblib=1.0.1
    - keras-preprocessing=1.1.2
    - markdown=3.3.4
    - numpy=1.19.5
    - oauthlib=3.1.0
    - pandas=1.1.5
    - pip=21.0.1
    - protobuf=3.15.5
    - pyasn1-modules=0.2.8
    - pyasn1=0.4.8
    - python-dateutil=2.8.1
    - python[version='3.6.*,3.6.*']
    - pytz=2021.1
    - requests-oauthlib=1.3.0
    - requests=2.25.1
    - rsa=4.7.2
    - scikit-learn=0.21.2
    - scipy=1.5.3
    - setuptools=49.6.0
    - six=1.15.0
    - termcolor=1.1.0
    - typing-extensions=3.7.4.3
    - urllib3=1.26.3
    - werkzeug=1.0.1
    - wheel=0.36.2
    - wrapt=1.12.1
    - zipp=3.4.1


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    absl-py-0.12.0             |     pyhd8ed1ab_0          96 KB  conda-forge
    aiohttp-3.7.4.post0        |   py36h8f6f2f9_0         622 KB  conda-forge
    async-timeout-3.0.1        |          py_1000          11 KB  conda-forge
    biopython-1.78             |   py36h8f6f2f9_2         2.7 MB  conda-forge
    blinker-1.5                |     pyhd8ed1ab_0          15 KB  conda-forge
    brotlipy-0.7.0             |py36h8f6f2f9_1001         341 KB  conda-forge
    cachetools-4.2.1           |     pyhd8ed1ab_0          13 KB  conda-forge
    certifi-2020.12.5          |   py36h5fab9bb_1         143 KB  conda-forge
    cffi-1.14.6                |   py36hd8eec40_1         224 KB  conda-forge
    chardet-4.0.0              |   py36h5fab9bb_1         219 KB  conda-forge
    click-8.0.1                |   py36h5fab9bb_0         145 KB  conda-forge
    cryptography-35.0.0        |   py36hb60f036_0         1.5 MB  conda-forge
    flatbuffers-1.12.1         |       h9c3ff4c_0         1.2 MB  conda-forge
    gast-0.3.3                 |             py_0          12 KB  conda-forge
    google-auth-1.27.1         |     pyhd3eb1b0_0          72 KB
    google-auth-oauthlib-0.4.3 |     pyhd8ed1ab_0          19 KB  conda-forge
    grpcio-1.32.0              |   py36he0f7d3b_0         1.8 MB  conda-forge
    h5py-2.10.0                |nompi_py36h4510012_106         1.1 MB  conda-forge
    idna_ssl-1.1.0             |  pyhd8ed1ab_1002           7 KB  conda-forge
    importlib-metadata-3.7.2   |   py36h5fab9bb_0          24 KB  conda-forge
    joblib-1.0.1               |     pyhd8ed1ab_0         206 KB  conda-forge
    libprotobuf-3.15.5         |       h780b84a_0         2.5 MB  conda-forge
    markdown-3.3.4             |     pyhd8ed1ab_0          67 KB  conda-forge
    multidict-5.2.0            |   py36h8f6f2f9_0          62 KB  conda-forge
    numpy-1.19.5               |   py36hfc0c790_2         5.3 MB  conda-forge
    oauthlib-3.1.0             |     pyhd8ed1ab_0          86 KB  conda-forge
    pandas-1.1.5               |   py36h284efc9_0        11.3 MB  conda-forge
    pip-21.0.1                 |     pyhd8ed1ab_0         1.1 MB  conda-forge
    protobuf-3.15.5            |   py36hc4f0c31_0         333 KB  conda-forge
    pyasn1-modules-0.2.8       |             py_0          72 KB
    pyjwt-2.8.0                |     pyhd8ed1ab_0          24 KB  conda-forge
    pyopenssl-22.0.0           |     pyhd8ed1ab_1         120 KB  conda-forge
    pysocks-1.7.1              |   py36h5fab9bb_3          27 KB  conda-forge
    pytz-2021.1                |     pyhd8ed1ab_0         239 KB  conda-forge
    requests-2.25.1            |     pyhd3deb0d_0          51 KB  conda-forge
    requests-oauthlib-1.3.0    |     pyh9f0ad1d_0          21 KB  conda-forge
    rsa-4.7.2                  |     pyh44b312d_0          28 KB  conda-forge
    scikit-learn-0.21.2        |   py36hcdab131_1         6.7 MB  conda-forge
    scipy-1.5.3                |   py36h81d768a_1        19.1 MB  conda-forge
    termcolor-1.1.0            |     pyhd8ed1ab_3           8 KB  conda-forge
    typing-extensions-3.7.4.3  |                0           8 KB  conda-forge
    typing_extensions-3.7.4.3  |             py_0          25 KB  conda-forge
    urllib3-1.26.3             |     pyhd8ed1ab_0          99 KB  conda-forge
    werkzeug-1.0.1             |     pyh9f0ad1d_0         239 KB  conda-forge
    wrapt-1.12.1               |   py36h8f6f2f9_3          47 KB  conda-forge
    yarl-1.6.3                 |   py36h8f6f2f9_2         142 KB  conda-forge
    zipp-3.4.1                 |     pyhd8ed1ab_0          11 KB  conda-forge
    ------------------------------------------------------------
                                           Total:        58.0 MB

The following NEW packages will be INSTALLED:

  absl-py            conda-forge/noarch::absl-py-0.12.0-pyhd8ed1ab_0
  aiohttp            conda-forge/linux-64::aiohttp-3.7.4.post0-py36h8f6f2f9_0
  astunparse         conda-forge/noarch::astunparse-1.6.3-pyhd8ed1ab_0
  async-timeout      conda-forge/noarch::async-timeout-3.0.1-py_1000
  attrs              conda-forge/noarch::attrs-22.2.0-pyh71513ae_0
  biopython          conda-forge/linux-64::biopython-1.78-py36h8f6f2f9_2
  blinker            conda-forge/noarch::blinker-1.5-pyhd8ed1ab_0
  brotlipy           conda-forge/linux-64::brotlipy-0.7.0-py36h8f6f2f9_1001
  c-ares             conda-forge/linux-64::c-ares-1.28.1-hd590300_0
  cachetools         conda-forge/noarch::cachetools-4.2.1-pyhd8ed1ab_0
  cffi               conda-forge/linux-64::cffi-1.14.6-py36hd8eec40_1
  chardet            conda-forge/linux-64::chardet-4.0.0-py36h5fab9bb_1
  click              conda-forge/linux-64::click-8.0.1-py36h5fab9bb_0
  cryptography       conda-forge/linux-64::cryptography-35.0.0-py36hb60f036_0
  flatbuffers        conda-forge/linux-64::flatbuffers-1.12.1-h9c3ff4c_0
  gast               conda-forge/noarch::gast-0.3.3-py_0
  google-auth        pkgs/main/noarch::google-auth-1.27.1-pyhd3eb1b0_0
  google-auth-oauth~ conda-forge/noarch::google-auth-oauthlib-0.4.3-pyhd8ed1ab_0
  google-pasta       conda-forge/noarch::google-pasta-0.2.0-pyh8c360ce_0
  grpcio             conda-forge/linux-64::grpcio-1.32.0-py36he0f7d3b_0
  h5py               conda-forge/linux-64::h5py-2.10.0-nompi_py36h4510012_106
  hdf5               conda-forge/linux-64::hdf5-1.10.6-nompi_h6a2412b_1114
  idna               conda-forge/noarch::idna-2.10-pyh9f0ad1d_0
  idna_ssl           conda-forge/noarch::idna_ssl-1.1.0-pyhd8ed1ab_1002
  importlib-metadata conda-forge/linux-64::importlib-metadata-3.7.2-py36h5fab9bb_0
  joblib             conda-forge/noarch::joblib-1.0.1-pyhd8ed1ab_0
  keras-preprocessi~ conda-forge/noarch::keras-preprocessing-1.1.2-pyhd8ed1ab_0
  keyutils           conda-forge/linux-64::keyutils-1.6.1-h166bdaf_0
  krb5               conda-forge/linux-64::krb5-1.20.1-hf9c8cef_0
  libblas            conda-forge/linux-64::libblas-3.9.0-20_linux64_openblas
  libcblas           conda-forge/linux-64::libcblas-3.9.0-20_linux64_openblas
  libcurl            conda-forge/linux-64::libcurl-7.87.0-h6312ad2_0
  libedit            conda-forge/linux-64::libedit-3.1.20191231-he28a2e2_2
  libev              conda-forge/linux-64::libev-4.33-hd590300_2
  libgfortran-ng     conda-forge/linux-64::libgfortran-ng-13.2.0-h69a702a_6
  libgfortran5       conda-forge/linux-64::libgfortran5-13.2.0-h43f5ff8_6
  liblapack          conda-forge/linux-64::liblapack-3.9.0-20_linux64_openblas
  libnghttp2         conda-forge/linux-64::libnghttp2-1.51.0-hdcd2b5c_0
  libopenblas        conda-forge/linux-64::libopenblas-0.3.25-pthreads_h413a1c8_0
  libprotobuf        conda-forge/linux-64::libprotobuf-3.15.5-h780b84a_0
  libssh2            conda-forge/linux-64::libssh2-1.10.0-haa6b8db_3
  markdown           conda-forge/noarch::markdown-3.3.4-pyhd8ed1ab_0
  multidict          conda-forge/linux-64::multidict-5.2.0-py36h8f6f2f9_0
  numpy              conda-forge/linux-64::numpy-1.19.5-py36hfc0c790_2
  oauthlib           conda-forge/noarch::oauthlib-3.1.0-pyhd8ed1ab_0
  pandas             conda-forge/linux-64::pandas-1.1.5-py36h284efc9_0
  protobuf           conda-forge/linux-64::protobuf-3.15.5-py36hc4f0c31_0
  pyasn1             conda-forge/noarch::pyasn1-0.4.8-py_0
  pyasn1-modules     pkgs/main/noarch::pyasn1-modules-0.2.8-py_0
  pycparser          conda-forge/noarch::pycparser-2.21-pyhd8ed1ab_0
  pyjwt              conda-forge/noarch::pyjwt-2.8.0-pyhd8ed1ab_0
  pyopenssl          conda-forge/noarch::pyopenssl-22.0.0-pyhd8ed1ab_1
  pysocks            conda-forge/linux-64::pysocks-1.7.1-py36h5fab9bb_3
  python-dateutil    conda-forge/noarch::python-dateutil-2.8.1-py_0
  pytz               conda-forge/noarch::pytz-2021.1-pyhd8ed1ab_0
  requests           conda-forge/noarch::requests-2.25.1-pyhd3deb0d_0
  requests-oauthlib  conda-forge/noarch::requests-oauthlib-1.3.0-pyh9f0ad1d_0
  rsa                conda-forge/noarch::rsa-4.7.2-pyh44b312d_0
  scikit-learn       conda-forge/linux-64::scikit-learn-0.21.2-py36hcdab131_1
  scipy              conda-forge/linux-64::scipy-1.5.3-py36h81d768a_1
  six                conda-forge/noarch::six-1.15.0-pyh9f0ad1d_0
  termcolor          conda-forge/noarch::termcolor-1.1.0-pyhd8ed1ab_3
  typing-extensions  conda-forge/noarch::typing-extensions-3.7.4.3-0
  typing_extensions  conda-forge/noarch::typing_extensions-3.7.4.3-py_0
  urllib3            conda-forge/noarch::urllib3-1.26.3-pyhd8ed1ab_0
  werkzeug           conda-forge/noarch::werkzeug-1.0.1-pyh9f0ad1d_0
  wrapt              conda-forge/linux-64::wrapt-1.12.1-py36h8f6f2f9_3
  yarl               conda-forge/linux-64::yarl-1.6.3-py36h8f6f2f9_2
  zipp               conda-forge/noarch::zipp-3.4.1-pyhd8ed1ab_0
  zlib               conda-forge/linux-64::zlib-1.2.13-hd590300_5

The following packages will be UPDATED:

  certifi                                  2016.9.26-py36_0 --> 2020.12.5-py36h5fab9bb_1
  pip                conda-forge/linux-64::pip-20.0.2-py36~ --> conda-forge/noarch::pip-21.0.1-pyhd8ed1ab_0
  wheel              conda-forge/linux-64::wheel-0.34.2-py~ --> conda-forge/noarch::wheel-0.36.2-pyhd3deb0d_0



Downloading and Extracting Packages

multidict-5.2.0      | 62 KB     |            |   0% 
multidict-5.2.0      | 62 KB     | ##5        |  26% 
multidict-5.2.0      | 62 KB     | ########## | 100% 

pandas-1.1.5         | 11.3 MB   |            |   0% 
pandas-1.1.5         | 11.3 MB   |            |   1% 
pandas-1.1.5         | 11.3 MB   | #          |  11% 
pandas-1.1.5         | 11.3 MB   | ##6        |  26% 
pandas-1.1.5         | 11.3 MB   | ####       |  41% 
pandas-1.1.5         | 11.3 MB   | #####7     |  57% 
pandas-1.1.5         | 11.3 MB   | #######3   |  73% 
pandas-1.1.5         | 11.3 MB   | ########8  |  89% 
pandas-1.1.5         | 11.3 MB   | ########## | 100% 

idna_ssl-1.1.0       | 7 KB      |            |   0% 
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urllib3-1.26.3       | 99 KB     |            |   0% 
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google-auth-1.27.1   | 72 KB     |            |   0% 
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werkzeug-1.0.1       | 239 KB    |            |   0% 
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gast-0.3.3           | 12 KB     |            |   0% 
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biopython-1.78       | 2.7 MB    |            |   0% 
biopython-1.78       | 2.7 MB    | ##2        |  22% 
biopython-1.78       | 2.7 MB    | #########1 |  92% 
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cachetools-4.2.1     | 13 KB     |            |   0% 
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cffi-1.14.6          | 224 KB    |            |   0% 
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h5py-2.10.0          | 1.1 MB    |            |   0% 
h5py-2.10.0          | 1.1 MB    | #####6     |  56% 
h5py-2.10.0          | 1.1 MB    | ########## | 100% 

aiohttp-3.7.4.post0  | 622 KB    |            |   0% 
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typing-extensions-3. | 8 KB      |            |   0% 
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libprotobuf-3.15.5   | 2.5 MB    |            |   0% 
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libprotobuf-3.15.5   | 2.5 MB    | ########## | 100% 
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grpcio-1.32.0        | 1.8 MB    |            |   0% 
grpcio-1.32.0        | 1.8 MB    |            |   1% 
grpcio-1.32.0        | 1.8 MB    | #########7 |  98% 
grpcio-1.32.0        | 1.8 MB    | ########## | 100% 

oauthlib-3.1.0       | 86 KB     |            |   0% 
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cryptography-35.0.0  | 1.5 MB    |            |   0% 
cryptography-35.0.0  | 1.5 MB    | ######5    |  66% 
cryptography-35.0.0  | 1.5 MB    | ########## | 100% 

joblib-1.0.1         | 206 KB    |            |   0% 
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protobuf-3.15.5      | 333 KB    |            |   0% 
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requests-oauthlib-1. | 21 KB     |            |   0% 
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typing_extensions-3. | 25 KB     |            |   0% 
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requests-2.25.1      | 51 KB     |            |   0% 
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termcolor-1.1.0      | 8 KB      |            |   0% 
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brotlipy-0.7.0       | 341 KB    |            |   0% 
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pytz-2021.1          | 239 KB    |            |   0% 
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pysocks-1.7.1        | 27 KB     |            |   0% 
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importlib-metadata-3 | 24 KB     |            |   0% 
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google-auth-oauthlib | 19 KB     |            |   0% 
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rsa-4.7.2            | 28 KB     |            |   0% 
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click-8.0.1          | 145 KB    |            |   0% 
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pip-21.0.1           | 1.1 MB    |            |   0% 
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pyjwt-2.8.0          | 24 KB     |            |   0% 
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scipy-1.5.3          | 19.1 MB   |            |   0% 
scipy-1.5.3          | 19.1 MB   | 4          |   4% 
scipy-1.5.3          | 19.1 MB   | #3         |  14% 
scipy-1.5.3          | 19.1 MB   | ##2        |  23% 
scipy-1.5.3          | 19.1 MB   | ###        |  31% 
scipy-1.5.3          | 19.1 MB   | ###9       |  40% 
scipy-1.5.3          | 19.1 MB   | ####8      |  48% 
scipy-1.5.3          | 19.1 MB   | #####7     |  57% 
scipy-1.5.3          | 19.1 MB   | ######6    |  66% 
scipy-1.5.3          | 19.1 MB   | #######5   |  75% 
scipy-1.5.3          | 19.1 MB   | ########3  |  84% 
scipy-1.5.3          | 19.1 MB   | #########3 |  93% 
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blinker-1.5          | 15 KB     |            |   0% 
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async-timeout-3.0.1  | 11 KB     |            |   0% 
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absl-py-0.12.0       | 96 KB     |            |   0% 
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certifi-2020.12.5    | 143 KB    |            |   0% 
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wrapt-1.12.1         | 47 KB     |            |   0% 
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pyopenssl-22.0.0     | 120 KB    |            |   0% 
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chardet-4.0.0        | 219 KB    |            |   0% 
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scikit-learn-0.21.2  | 6.7 MB    |            |   0% 
scikit-learn-0.21.2  | 6.7 MB    | #1         |  11% 
scikit-learn-0.21.2  | 6.7 MB    | ###6       |  36% 
scikit-learn-0.21.2  | 6.7 MB    | ######3    |  64% 
scikit-learn-0.21.2  | 6.7 MB    | #########  |  91% 
scikit-learn-0.21.2  | 6.7 MB    | ########## | 100% 

zipp-3.4.1           | 11 KB     |            |   0% 
zipp-3.4.1           | 11 KB     | ########## | 100% 

numpy-1.19.5         | 5.3 MB    |            |   0% 
numpy-1.19.5         | 5.3 MB    | #6         |  16% 
numpy-1.19.5         | 5.3 MB    | ####9      |  50% 
numpy-1.19.5         | 5.3 MB    | ########1  |  81% 
numpy-1.19.5         | 5.3 MB    | ########## | 100% 

pyasn1-modules-0.2.8 | 72 KB     |            |   0% 
pyasn1-modules-0.2.8 | 72 KB     | ########## | 100% 
pyasn1-modules-0.2.8 | 72 KB     | ########## | 100% 

markdown-3.3.4       | 67 KB     |            |   0% 
markdown-3.3.4       | 67 KB     | ########## | 100% 

flatbuffers-1.12.1   | 1.2 MB    |            |   0% 
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flatbuffers-1.12.1   | 1.2 MB    | ########## | 100% 
flatbuffers-1.12.1   | 1.2 MB    | ########## | 100% 

yarl-1.6.3           | 142 KB    |            |   0% 
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Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting tensorflow==2.4.1
  Using cached tensorflow-2.4.1-cp36-cp36m-manylinux2010_x86_64.whl (394.3 MB)
Requirement already satisfied: six~=1.15.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow==2.4.1) (1.15.0)
Requirement already satisfied: absl-py~=0.10 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow==2.4.1) (0.12.0)
Requirement already satisfied: gast==0.3.3 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow==2.4.1) (0.3.3)
Requirement already satisfied: protobuf>=3.9.2 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow==2.4.1) (3.15.5)
Requirement already satisfied: grpcio~=1.32.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow==2.4.1) (1.32.0)
Collecting opt-einsum~=3.3.0
  Using cached opt_einsum-3.3.0-py3-none-any.whl (65 kB)
Requirement already satisfied: typing-extensions~=3.7.4 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow==2.4.1) (3.7.4.3)
Requirement already satisfied: keras-preprocessing~=1.1.2 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow==2.4.1) (1.1.2)
Requirement already satisfied: h5py~=2.10.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow==2.4.1) (2.10.0)
Requirement already satisfied: numpy~=1.19.2 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow==2.4.1) (1.19.5)
Collecting flatbuffers~=1.12.0
  Using cached flatbuffers-1.12-py2.py3-none-any.whl (15 kB)
Requirement already satisfied: termcolor~=1.1.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow==2.4.1) (1.1.0)
Requirement already satisfied: wheel~=0.35 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow==2.4.1) (0.36.2)
Requirement already satisfied: wrapt~=1.12.1 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow==2.4.1) (1.12.1)
Collecting tensorboard~=2.4
  Using cached tensorboard-2.10.1-py3-none-any.whl (5.9 MB)
Requirement already satisfied: astunparse~=1.6.3 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow==2.4.1) (1.6.3)
Collecting tensorflow-estimator<2.5.0,>=2.4.0
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Requirement already satisfied: google-pasta~=0.2 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow==2.4.1) (0.2.0)
Requirement already satisfied: setuptools>=41.0.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorboard~=2.4->tensorflow==2.4.1) (49.6.0.post20210108)
Requirement already satisfied: requests<3,>=2.21.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorboard~=2.4->tensorflow==2.4.1) (2.25.1)
Collecting tensorboard-data-server<0.7.0,>=0.6.0
  Using cached tensorboard_data_server-0.6.1-py3-none-manylinux2010_x86_64.whl (4.9 MB)
Requirement already satisfied: markdown>=2.6.8 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorboard~=2.4->tensorflow==2.4.1) (3.3.4)
Requirement already satisfied: werkzeug>=1.0.1 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorboard~=2.4->tensorflow==2.4.1) (1.0.1)
Requirement already satisfied: google-auth<3,>=1.6.3 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorboard~=2.4->tensorflow==2.4.1) (1.27.1)
Requirement already satisfied: google-auth-oauthlib<0.5,>=0.4.1 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorboard~=2.4->tensorflow==2.4.1) (0.4.3)
Collecting tensorboard-plugin-wit>=1.6.0
  Using cached tensorboard_plugin_wit-1.8.1-py3-none-any.whl (781 kB)
Requirement already satisfied: cachetools<5.0,>=2.0.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from google-auth<3,>=1.6.3->tensorboard~=2.4->tensorflow==2.4.1) (4.2.1)
Requirement already satisfied: rsa<5,>=3.1.4 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from google-auth<3,>=1.6.3->tensorboard~=2.4->tensorflow==2.4.1) (4.7.2)
Requirement already satisfied: pyasn1-modules>=0.2.1 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from google-auth<3,>=1.6.3->tensorboard~=2.4->tensorflow==2.4.1) (0.2.8)
Requirement already satisfied: requests-oauthlib>=0.7.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from google-auth-oauthlib<0.5,>=0.4.1->tensorboard~=2.4->tensorflow==2.4.1) (1.3.0)
Requirement already satisfied: importlib-metadata in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from markdown>=2.6.8->tensorboard~=2.4->tensorflow==2.4.1) (3.7.2)
Requirement already satisfied: pyasn1<0.5.0,>=0.4.6 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from pyasn1-modules>=0.2.1->google-auth<3,>=1.6.3->tensorboard~=2.4->tensorflow==2.4.1) (0.4.8)
Requirement already satisfied: urllib3<1.27,>=1.21.1 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from requests<3,>=2.21.0->tensorboard~=2.4->tensorflow==2.4.1) (1.26.3)
Requirement already satisfied: certifi>=2017.4.17 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from requests<3,>=2.21.0->tensorboard~=2.4->tensorflow==2.4.1) (2020.12.5)
Requirement already satisfied: chardet<5,>=3.0.2 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from requests<3,>=2.21.0->tensorboard~=2.4->tensorflow==2.4.1) (4.0.0)
Requirement already satisfied: idna<3,>=2.5 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from requests<3,>=2.21.0->tensorboard~=2.4->tensorflow==2.4.1) (2.10)
Requirement already satisfied: oauthlib>=3.0.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from requests-oauthlib>=0.7.0->google-auth-oauthlib<0.5,>=0.4.1->tensorboard~=2.4->tensorflow==2.4.1) (3.1.0)
Requirement already satisfied: zipp>=0.5 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from importlib-metadata->markdown>=2.6.8->tensorboard~=2.4->tensorflow==2.4.1) (3.4.1)
Installing collected packages: tensorboard-plugin-wit, tensorboard-data-server, tensorflow-estimator, tensorboard, opt-einsum, flatbuffers, tensorflow
Successfully installed flatbuffers-1.12 opt-einsum-3.3.0 tensorboard-2.10.1 tensorboard-data-server-0.6.1 tensorboard-plugin-wit-1.8.1 tensorflow-2.4.1 tensorflow-estimator-2.4.0
Processing /home/biocbuild/bbs-3.19-bioc-longtests/meat/crisprScore.Rcheck/crisprScore/python/enpamgb
Requirement already satisfied: biopython>=1.74 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from sgrna-modeler==0.1.0) (1.78)
Requirement already satisfied: joblib>=0.13.2 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from sgrna-modeler==0.1.0) (1.0.1)
Requirement already satisfied: numpy>=1.16.4 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from sgrna-modeler==0.1.0) (1.19.5)
Requirement already satisfied: pandas>=0.24.2 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from sgrna-modeler==0.1.0) (1.1.5)
Requirement already satisfied: scikit-learn==0.21.2 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from sgrna-modeler==0.1.0) (0.21.2)
Requirement already satisfied: scipy>=1.3.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from sgrna-modeler==0.1.0) (1.5.3)
Requirement already satisfied: tensorflow>=1.14.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from sgrna-modeler==0.1.0) (2.4.1)
Requirement already satisfied: python-dateutil>=2.7.3 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from pandas>=0.24.2->sgrna-modeler==0.1.0) (2.8.1)
Requirement already satisfied: pytz>=2017.2 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from pandas>=0.24.2->sgrna-modeler==0.1.0) (2021.1)
Requirement already satisfied: six>=1.5 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from python-dateutil>=2.7.3->pandas>=0.24.2->sgrna-modeler==0.1.0) (1.15.0)
Requirement already satisfied: tensorboard~=2.4 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow>=1.14.0->sgrna-modeler==0.1.0) (2.10.1)
Requirement already satisfied: keras-preprocessing~=1.1.2 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow>=1.14.0->sgrna-modeler==0.1.0) (1.1.2)
Requirement already satisfied: wheel~=0.35 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow>=1.14.0->sgrna-modeler==0.1.0) (0.36.2)
Requirement already satisfied: wrapt~=1.12.1 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow>=1.14.0->sgrna-modeler==0.1.0) (1.12.1)
Requirement already satisfied: typing-extensions~=3.7.4 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow>=1.14.0->sgrna-modeler==0.1.0) (3.7.4.3)
Requirement already satisfied: h5py~=2.10.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow>=1.14.0->sgrna-modeler==0.1.0) (2.10.0)
Requirement already satisfied: opt-einsum~=3.3.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow>=1.14.0->sgrna-modeler==0.1.0) (3.3.0)
Requirement already satisfied: termcolor~=1.1.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow>=1.14.0->sgrna-modeler==0.1.0) (1.1.0)
Requirement already satisfied: tensorflow-estimator<2.5.0,>=2.4.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow>=1.14.0->sgrna-modeler==0.1.0) (2.4.0)
Requirement already satisfied: astunparse~=1.6.3 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow>=1.14.0->sgrna-modeler==0.1.0) (1.6.3)
Requirement already satisfied: protobuf>=3.9.2 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow>=1.14.0->sgrna-modeler==0.1.0) (3.15.5)
Requirement already satisfied: grpcio~=1.32.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow>=1.14.0->sgrna-modeler==0.1.0) (1.32.0)
Requirement already satisfied: absl-py~=0.10 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow>=1.14.0->sgrna-modeler==0.1.0) (0.12.0)
Requirement already satisfied: flatbuffers~=1.12.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow>=1.14.0->sgrna-modeler==0.1.0) (1.12)
Requirement already satisfied: google-pasta~=0.2 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow>=1.14.0->sgrna-modeler==0.1.0) (0.2.0)
Requirement already satisfied: gast==0.3.3 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorflow>=1.14.0->sgrna-modeler==0.1.0) (0.3.3)
Requirement already satisfied: tensorboard-data-server<0.7.0,>=0.6.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (0.6.1)
Requirement already satisfied: werkzeug>=1.0.1 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (1.0.1)
Requirement already satisfied: requests<3,>=2.21.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (2.25.1)
Requirement already satisfied: google-auth-oauthlib<0.5,>=0.4.1 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (0.4.3)
Requirement already satisfied: google-auth<3,>=1.6.3 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (1.27.1)
Requirement already satisfied: markdown>=2.6.8 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (3.3.4)
Requirement already satisfied: tensorboard-plugin-wit>=1.6.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (1.8.1)
Requirement already satisfied: setuptools>=41.0.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (49.6.0.post20210108)
Requirement already satisfied: rsa<5,>=3.1.4 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from google-auth<3,>=1.6.3->tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (4.7.2)
Requirement already satisfied: pyasn1-modules>=0.2.1 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from google-auth<3,>=1.6.3->tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (0.2.8)
Requirement already satisfied: cachetools<5.0,>=2.0.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from google-auth<3,>=1.6.3->tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (4.2.1)
Requirement already satisfied: requests-oauthlib>=0.7.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from google-auth-oauthlib<0.5,>=0.4.1->tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (1.3.0)
Requirement already satisfied: importlib-metadata in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from markdown>=2.6.8->tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (3.7.2)
Requirement already satisfied: pyasn1<0.5.0,>=0.4.6 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from pyasn1-modules>=0.2.1->google-auth<3,>=1.6.3->tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (0.4.8)
Requirement already satisfied: certifi>=2017.4.17 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from requests<3,>=2.21.0->tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (2020.12.5)
Requirement already satisfied: idna<3,>=2.5 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from requests<3,>=2.21.0->tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (2.10)
Requirement already satisfied: chardet<5,>=3.0.2 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from requests<3,>=2.21.0->tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (4.0.0)
Requirement already satisfied: urllib3<1.27,>=1.21.1 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from requests<3,>=2.21.0->tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (1.26.3)
Requirement already satisfied: oauthlib>=3.0.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from requests-oauthlib>=0.7.0->google-auth-oauthlib<0.5,>=0.4.1->tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (3.1.0)
Requirement already satisfied: zipp>=0.5 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/enpamgb_basilisk/lib/python3.6/site-packages (from importlib-metadata->markdown>=2.6.8->tensorboard~=2.4->tensorflow>=1.14.0->sgrna-modeler==0.1.0) (3.4.1)
Building wheels for collected packages: sgrna-modeler
  Building wheel for sgrna-modeler (setup.py): started
  Building wheel for sgrna-modeler (setup.py): finished with status 'done'
  Created wheel for sgrna-modeler: filename=sgrna_modeler-0.1.0-py3-none-any.whl size=459416 sha256=54b4957bfaedb24ac8e0d4b6bdc2b3ee119bd8475b54a3c3f93a24e03209c503
  Stored in directory: /tmp/pip-ephem-wheel-cache-4xz5k2k1/wheels/9f/4c/ab/8f4690040a9feb3f3df083b97711d70bc8ffd1bcd23c9287bc
Successfully built sgrna-modeler
Installing collected packages: sgrna-modeler
Successfully installed sgrna-modeler-0.1.0
2024-05-04 16:45:40.768543: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /var/cache/basilisk/1.16.0/crisprScore/1.8.0/lindel_basilisk

  added / updated specs:
    - python=3.6


The following NEW packages will be INSTALLED:

  _libgcc_mutex      conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
  _openmp_mutex      conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
  ca-certificates    conda-forge/linux-64::ca-certificates-2024.2.2-hbcca054_0
  certifi            conda-forge/linux-64::certifi-2016.9.26-py36_0
  ld_impl_linux-64   conda-forge/linux-64::ld_impl_linux-64-2.40-h55db66e_0
  libffi             conda-forge/linux-64::libffi-3.4.2-h7f98852_5
  libgcc-ng          conda-forge/linux-64::libgcc-ng-13.2.0-h77fa898_6
  libgomp            conda-forge/linux-64::libgomp-13.2.0-h77fa898_6
  libnsl             conda-forge/linux-64::libnsl-2.0.1-hd590300_0
  libsqlite          conda-forge/linux-64::libsqlite-3.45.3-h2797004_0
  libstdcxx-ng       conda-forge/linux-64::libstdcxx-ng-13.2.0-hc0a3c3a_6
  libzlib            conda-forge/linux-64::libzlib-1.2.13-hd590300_5
  ncurses            conda-forge/linux-64::ncurses-6.4.20240210-h59595ed_0
  openssl            conda-forge/linux-64::openssl-1.1.1w-hd590300_0
  pip                conda-forge/linux-64::pip-20.0.2-py36_1
  python             conda-forge/linux-64::python-3.6.15-hb7a2778_0_cpython
  python_abi         conda-forge/linux-64::python_abi-3.6-2_cp36m
  readline           conda-forge/linux-64::readline-8.2-h8228510_1
  setuptools         conda-forge/linux-64::setuptools-49.6.0-py36h5fab9bb_3
  sqlite             conda-forge/linux-64::sqlite-3.45.3-h2c6b66d_0
  tk                 conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
  wheel              conda-forge/linux-64::wheel-0.34.2-py36_0
  xz                 conda-forge/linux-64::xz-5.2.6-h166bdaf_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.4.0

Please update conda by running

    $ conda update -n base -c defaults conda



# All requested packages already installed.

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.4.0

Please update conda by running

    $ conda update -n base -c defaults conda



## Package Plan ##

  environment location: /var/cache/basilisk/1.16.0/crisprScore/1.8.0/lindel_basilisk

  added / updated specs:
    - certifi=2020.12.5
    - numpy=1.19.5
    - pip=21.0.1
    - python[version='3.6.*,3.6.*']
    - scipy=1.5.3
    - setuptools=49.6.0
    - wheel=0.36.2


The following NEW packages will be INSTALLED:

  libblas            conda-forge/linux-64::libblas-3.9.0-20_linux64_openblas
  libcblas           conda-forge/linux-64::libcblas-3.9.0-20_linux64_openblas
  libgfortran-ng     conda-forge/linux-64::libgfortran-ng-13.2.0-h69a702a_6
  libgfortran5       conda-forge/linux-64::libgfortran5-13.2.0-h43f5ff8_6
  liblapack          conda-forge/linux-64::liblapack-3.9.0-20_linux64_openblas
  libopenblas        conda-forge/linux-64::libopenblas-0.3.25-pthreads_h413a1c8_0
  numpy              conda-forge/linux-64::numpy-1.19.5-py36hfc0c790_2
  scipy              conda-forge/linux-64::scipy-1.5.3-py36h81d768a_1

The following packages will be UPDATED:

  certifi                                  2016.9.26-py36_0 --> 2020.12.5-py36h5fab9bb_1
  pip                conda-forge/linux-64::pip-20.0.2-py36~ --> conda-forge/noarch::pip-21.0.1-pyhd8ed1ab_0
  wheel              conda-forge/linux-64::wheel-0.34.2-py~ --> conda-forge/noarch::wheel-0.36.2-pyhd3deb0d_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Processing /home/biocbuild/bbs-3.19-bioc-longtests/meat/crisprScore.Rcheck/crisprScore/python/lindel
Requirement already satisfied: numpy in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/lindel_basilisk/lib/python3.6/site-packages (from Lindel==1.0) (1.19.5)
Requirement already satisfied: scipy in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/lindel_basilisk/lib/python3.6/site-packages (from Lindel==1.0) (1.5.3)
Building wheels for collected packages: Lindel
  Building wheel for Lindel (setup.py): started
  Building wheel for Lindel (setup.py): finished with status 'done'
  Created wheel for Lindel: filename=Lindel-1.0-py3-none-any.whl size=33602 sha256=f8a3e0a89bd0d7f2d4ac3e889639be4924f114357beef9433d6d1f340bfc3776
  Stored in directory: /tmp/pip-ephem-wheel-cache-p_un1xk3/wheels/73/84/df/e8e4b76d3d9e2371c819c0bdab01f6b981ed278fc5e77ada6c
Successfully built Lindel
Installing collected packages: Lindel
Successfully installed Lindel-1.0
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk

  added / updated specs:
    - python=3.6


The following NEW packages will be INSTALLED:

  _libgcc_mutex      conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
  _openmp_mutex      conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
  ca-certificates    conda-forge/linux-64::ca-certificates-2024.2.2-hbcca054_0
  certifi            conda-forge/linux-64::certifi-2016.9.26-py36_0
  ld_impl_linux-64   conda-forge/linux-64::ld_impl_linux-64-2.40-h55db66e_0
  libffi             conda-forge/linux-64::libffi-3.4.2-h7f98852_5
  libgcc-ng          conda-forge/linux-64::libgcc-ng-13.2.0-h77fa898_6
  libgomp            conda-forge/linux-64::libgomp-13.2.0-h77fa898_6
  libnsl             conda-forge/linux-64::libnsl-2.0.1-hd590300_0
  libsqlite          conda-forge/linux-64::libsqlite-3.45.3-h2797004_0
  libstdcxx-ng       conda-forge/linux-64::libstdcxx-ng-13.2.0-hc0a3c3a_6
  libzlib            conda-forge/linux-64::libzlib-1.2.13-hd590300_5
  ncurses            conda-forge/linux-64::ncurses-6.4.20240210-h59595ed_0
  openssl            conda-forge/linux-64::openssl-1.1.1w-hd590300_0
  pip                conda-forge/linux-64::pip-20.0.2-py36_1
  python             conda-forge/linux-64::python-3.6.15-hb7a2778_0_cpython
  python_abi         conda-forge/linux-64::python_abi-3.6-2_cp36m
  readline           conda-forge/linux-64::readline-8.2-h8228510_1
  setuptools         conda-forge/linux-64::setuptools-49.6.0-py36h5fab9bb_3
  sqlite             conda-forge/linux-64::sqlite-3.45.3-h2c6b66d_0
  tk                 conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
  wheel              conda-forge/linux-64::wheel-0.34.2-py36_0
  xz                 conda-forge/linux-64::xz-5.2.6-h166bdaf_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.4.0

Please update conda by running

    $ conda update -n base -c defaults conda



# All requested packages already installed.

Collecting package metadata (current_repodata.json): ...working... WARNING conda.models.version:get_matcher(535): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.7.1.*, but conda is ignoring the .* and treating it as 1.7.1
done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... WARNING conda.models.version:get_matcher(535): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.8.0.*, but conda is ignoring the .* and treating it as 1.8.0
WARNING conda.models.version:get_matcher(535): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.9.0.*, but conda is ignoring the .* and treating it as 1.9.0
WARNING conda.models.version:get_matcher(535): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.6.0.*, but conda is ignoring the .* and treating it as 1.6.0
done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.4.0

Please update conda by running

    $ conda update -n base -c defaults conda



## Package Plan ##

  environment location: /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk

  added / updated specs:
    - absl-py=0.12.0
    - astor=0.8.1
    - biopython=1.71
    - bleach=1.5.0
    - certifi=2020.12.5
    - cycler=0.10.0
    - decorator=4.4.2
    - dotmap=1.2.20
    - gast=0.4.0
    - gpy=1.9.8
    - gpyopt=1.2.6
    - grpcio=1.36.1
    - h5py=2.9.0
    - html5lib=0.9999999
    - importlib-metadata=3.7.2
    - keras=2.1.6
    - kiwisolver=1.3.1
    - mako=1.1.4
    - markdown=3.3.4
    - markupsafe=1.1.1
    - matplotlib=3.1.1
    - numpy=1.14.0
    - pandas=0.25.3
    - paramz=0.9.5
    - pip=21.0.1
    - protobuf=3.15.5
    - pygpu=0.7.6
    - pyparsing=2.4.7
    - python-dateutil=2.8.1
    - python[version='3.6.*,3.6.*']
    - pytz=2021.1
    - pyyaml=5.4.1
    - scikit-learn=0.19.1
    - scipy=1.1.0
    - setuptools=49.6.0
    - six=1.15.0
    - tensorboard=1.8.0
    - tensorflow=1.8.0
    - termcolor=1.1.0
    - theano=1.0.5
    - tornado=6.1
    - typing-extensions=3.7.4.3
    - viennarna=2.4.5
    - webencodings=0.5.1
    - werkzeug=1.0.1
    - wheel=0.36.2
    - zipp=3.4.1


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    astor-0.8.1                |     pyh9f0ad1d_0          25 KB  conda-forge
    binutils_impl_linux-64-2.39|       he00db2b_1         4.7 MB  conda-forge
    binutils_linux-64-2.39     |      h5fc0e48_13          27 KB  conda-forge
    biopython-1.71             |           py36_0         2.6 MB  conda-forge
    blas-1.1                   |         openblas           1 KB  conda-forge
    bleach-1.5.0               |           py36_0          23 KB  conda-forge
    dbus-1.13.6                |       h5008d03_3         604 KB  conda-forge
    dotmap-1.2.20              |             py_0           8 KB  conda-forge
    gcc_impl_linux-64-9.5.0    |      h99780fb_19        43.5 MB  conda-forge
    gcc_linux-64-9.5.0         |      h4258300_13          29 KB  conda-forge
    glib-2.80.0                |       hf2295e7_6         584 KB  conda-forge
    glib-tools-2.80.0          |       hde27a5a_6         110 KB  conda-forge
    gpy-1.9.8                  |   py36hd352d35_0         1.6 MB  conda-forge
    gpyopt-1.2.6               |     pyh8c360ce_0          56 KB  conda-forge
    grpcio-1.36.1              |   py36h8e87921_0         2.1 MB  conda-forge
    gst-plugins-base-1.14.1    |       h6a678d5_1         2.2 MB
    gstreamer-1.14.1           |       h5eee18b_1         1.7 MB
    gxx_impl_linux-64-9.5.0    |      h99780fb_19        10.6 MB  conda-forge
    gxx_linux-64-9.5.0         |      h43f449f_13          28 KB  conda-forge
    h5py-2.9.0                 |nompi_py36hf008753_1102         1.2 MB  conda-forge
    hdf5-1.10.4                |nompi_h3c11f04_1106         5.3 MB  conda-forge
    html5lib-0.9999999         |           py36_0         181 KB  conda-forge
    keras-2.1.6                |           py36_0         500 KB  conda-forge
    kernel-headers_linux-64-2.6.32|      he073ed8_17         694 KB  conda-forge
    kiwisolver-1.3.1           |   py36h605e78d_1          78 KB  conda-forge
    ld_impl_linux-64-2.39      |       hcc3a1bd_1         675 KB  conda-forge
    libgcc-devel_linux-64-9.5.0|      h0a57e50_19         4.0 MB  conda-forge
    libgfortran-3.0.0          |                1         281 KB  conda-forge
    libglib-2.80.0             |       hf2295e7_6         3.8 MB  conda-forge
    libsanitizer-9.5.0         |      h2f262e1_19         6.9 MB  conda-forge
    libstdcxx-devel_linux-64-9.5.0|      h0a57e50_19         9.9 MB  conda-forge
    markupsafe-1.1.1           |   py36h8f6f2f9_3          27 KB  conda-forge
    matplotlib-3.1.1           |   py36h5429711_0         5.0 MB
    numpy-1.14.0               |py36_blas_openblas_200         9.0 MB  conda-forge
    openblas-0.2.20            |                8        17.0 MB  conda-forge
    pandas-0.25.3              |   py36he6710b0_0         8.8 MB
    paramz-0.9.5               |             py_0          60 KB  conda-forge
    pcre2-10.43                |       hcad00b1_0         929 KB  conda-forge
    pygpu-0.7.6                |py36h3010b51_1000         657 KB  conda-forge
    pyqt-5.9.2                 |   py36hcca6a23_4         5.7 MB  conda-forge
    pyyaml-5.4.1               |   py36h8f6f2f9_1         194 KB  conda-forge
    qt-5.9.7                   |       h5867ecd_1        68.5 MB
    scikit-learn-0.19.1        |py36_blas_openblas_201        12.8 MB  conda-forge
    scipy-1.1.0                |py36_blas_openblash7943236_201        40.3 MB  conda-forge
    sip-4.19.8                 |py36hf484d3e_1000         290 KB  conda-forge
    sysroot_linux-64-2.12      |      he073ed8_17        14.4 MB  conda-forge
    tensorboard-1.8.0          |           py36_1         3.1 MB  conda-forge
    tensorflow-1.8.0           |           py36_1        42.1 MB  conda-forge
    theano-1.0.5               |   py36hc4f0c31_1         3.7 MB  conda-forge
    tornado-6.1                |   py36h8f6f2f9_1         643 KB  conda-forge
    viennarna-2.4.5            |   py36hd28b015_2         9.7 MB  bioconda
    webencodings-0.5.1         |     pyhd8ed1ab_2          15 KB  conda-forge
    ------------------------------------------------------------
                                           Total:       346.4 MB

The following NEW packages will be INSTALLED:

  absl-py            conda-forge/noarch::absl-py-0.12.0-pyhd8ed1ab_0
  astor              conda-forge/noarch::astor-0.8.1-pyh9f0ad1d_0
  binutils_impl_lin~ conda-forge/linux-64::binutils_impl_linux-64-2.39-he00db2b_1
  binutils_linux-64  conda-forge/linux-64::binutils_linux-64-2.39-h5fc0e48_13
  biopython          conda-forge/linux-64::biopython-1.71-py36_0
  blas               conda-forge/linux-64::blas-1.1-openblas
  bleach             conda-forge/linux-64::bleach-1.5.0-py36_0
  bzip2              conda-forge/linux-64::bzip2-1.0.8-hd590300_5
  c-ares             conda-forge/linux-64::c-ares-1.28.1-hd590300_0
  cycler             conda-forge/noarch::cycler-0.10.0-py_2
  dbus               conda-forge/linux-64::dbus-1.13.6-h5008d03_3
  decorator          conda-forge/noarch::decorator-4.4.2-py_0
  dotmap             conda-forge/noarch::dotmap-1.2.20-py_0
  expat              conda-forge/linux-64::expat-2.6.2-h59595ed_0
  fontconfig         conda-forge/linux-64::fontconfig-2.14.2-h14ed4e7_0
  freetype           conda-forge/linux-64::freetype-2.12.1-h267a509_2
  gast               conda-forge/noarch::gast-0.4.0-pyh9f0ad1d_0
  gcc_impl_linux-64  conda-forge/linux-64::gcc_impl_linux-64-9.5.0-h99780fb_19
  gcc_linux-64       conda-forge/linux-64::gcc_linux-64-9.5.0-h4258300_13
  glib               conda-forge/linux-64::glib-2.80.0-hf2295e7_6
  glib-tools         conda-forge/linux-64::glib-tools-2.80.0-hde27a5a_6
  gpy                conda-forge/linux-64::gpy-1.9.8-py36hd352d35_0
  gpyopt             conda-forge/noarch::gpyopt-1.2.6-pyh8c360ce_0
  grpcio             conda-forge/linux-64::grpcio-1.36.1-py36h8e87921_0
  gst-plugins-base   pkgs/main/linux-64::gst-plugins-base-1.14.1-h6a678d5_1
  gstreamer          pkgs/main/linux-64::gstreamer-1.14.1-h5eee18b_1
  gxx_impl_linux-64  conda-forge/linux-64::gxx_impl_linux-64-9.5.0-h99780fb_19
  gxx_linux-64       conda-forge/linux-64::gxx_linux-64-9.5.0-h43f449f_13
  h5py               conda-forge/linux-64::h5py-2.9.0-nompi_py36hf008753_1102
  hdf5               conda-forge/linux-64::hdf5-1.10.4-nompi_h3c11f04_1106
  html5lib           conda-forge/linux-64::html5lib-0.9999999-py36_0
  icu                conda-forge/linux-64::icu-58.2-hf484d3e_1000
  importlib-metadata conda-forge/linux-64::importlib-metadata-3.7.2-py36h5fab9bb_0
  jpeg               conda-forge/linux-64::jpeg-9e-h0b41bf4_3
  keras              conda-forge/linux-64::keras-2.1.6-py36_0
  kernel-headers_li~ conda-forge/noarch::kernel-headers_linux-64-2.6.32-he073ed8_17
  kiwisolver         conda-forge/linux-64::kiwisolver-1.3.1-py36h605e78d_1
  libexpat           conda-forge/linux-64::libexpat-2.6.2-h59595ed_0
  libgcc-devel_linu~ conda-forge/linux-64::libgcc-devel_linux-64-9.5.0-h0a57e50_19
  libgfortran        conda-forge/linux-64::libgfortran-3.0.0-1
  libgfortran-ng     conda-forge/linux-64::libgfortran-ng-7.5.0-h14aa051_20
  libgfortran4       conda-forge/linux-64::libgfortran4-7.5.0-h14aa051_20
  libglib            conda-forge/linux-64::libglib-2.80.0-hf2295e7_6
  libgpuarray        conda-forge/linux-64::libgpuarray-0.7.6-h7f98852_1003
  libiconv           conda-forge/linux-64::libiconv-1.17-hd590300_2
  libpng             conda-forge/linux-64::libpng-1.6.43-h2797004_0
  libprotobuf        conda-forge/linux-64::libprotobuf-3.15.5-h780b84a_0
  libsanitizer       conda-forge/linux-64::libsanitizer-9.5.0-h2f262e1_19
  libstdcxx-devel_l~ conda-forge/linux-64::libstdcxx-devel_linux-64-9.5.0-h0a57e50_19
  libuuid            conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
  libxcb             conda-forge/linux-64::libxcb-1.16-hd590300_0
  libxml2            conda-forge/linux-64::libxml2-2.9.9-h13577e0_2
  mako               conda-forge/noarch::mako-1.1.4-pyh44b312d_0
  markdown           conda-forge/noarch::markdown-3.3.4-pyhd8ed1ab_0
  markupsafe         conda-forge/linux-64::markupsafe-1.1.1-py36h8f6f2f9_3
  matplotlib         pkgs/main/linux-64::matplotlib-3.1.1-py36h5429711_0
  numpy              conda-forge/linux-64::numpy-1.14.0-py36_blas_openblas_200
  openblas           conda-forge/linux-64::openblas-0.2.20-8
  pandas             pkgs/main/linux-64::pandas-0.25.3-py36he6710b0_0
  paramz             conda-forge/noarch::paramz-0.9.5-py_0
  pcre2              conda-forge/linux-64::pcre2-10.43-hcad00b1_0
  protobuf           conda-forge/linux-64::protobuf-3.15.5-py36hc4f0c31_0
  pthread-stubs      conda-forge/linux-64::pthread-stubs-0.4-h36c2ea0_1001
  pygpu              conda-forge/linux-64::pygpu-0.7.6-py36h3010b51_1000
  pyparsing          conda-forge/noarch::pyparsing-2.4.7-pyhd8ed1ab_1
  pyqt               conda-forge/linux-64::pyqt-5.9.2-py36hcca6a23_4
  python-dateutil    conda-forge/noarch::python-dateutil-2.8.1-py_0
  pytz               conda-forge/noarch::pytz-2021.1-pyhd8ed1ab_0
  pyyaml             conda-forge/linux-64::pyyaml-5.4.1-py36h8f6f2f9_1
  qt                 pkgs/main/linux-64::qt-5.9.7-h5867ecd_1
  scikit-learn       conda-forge/linux-64::scikit-learn-0.19.1-py36_blas_openblas_201
  scipy              conda-forge/linux-64::scipy-1.1.0-py36_blas_openblash7943236_201
  sip                conda-forge/linux-64::sip-4.19.8-py36hf484d3e_1000
  six                conda-forge/noarch::six-1.15.0-pyh9f0ad1d_0
  sysroot_linux-64   conda-forge/noarch::sysroot_linux-64-2.12-he073ed8_17
  tensorboard        conda-forge/linux-64::tensorboard-1.8.0-py36_1
  tensorflow         conda-forge/linux-64::tensorflow-1.8.0-py36_1
  termcolor          conda-forge/noarch::termcolor-1.1.0-pyhd8ed1ab_3
  theano             conda-forge/linux-64::theano-1.0.5-py36hc4f0c31_1
  tornado            conda-forge/linux-64::tornado-6.1-py36h8f6f2f9_1
  typing-extensions  conda-forge/noarch::typing-extensions-3.7.4.3-0
  typing_extensions  conda-forge/noarch::typing_extensions-3.7.4.3-py_0
  viennarna          bioconda/linux-64::viennarna-2.4.5-py36hd28b015_2
  webencodings       conda-forge/noarch::webencodings-0.5.1-pyhd8ed1ab_2
  werkzeug           conda-forge/noarch::werkzeug-1.0.1-pyh9f0ad1d_0
  xorg-libxau        conda-forge/linux-64::xorg-libxau-1.0.11-hd590300_0
  xorg-libxdmcp      conda-forge/linux-64::xorg-libxdmcp-1.1.3-h7f98852_0
  yaml               conda-forge/linux-64::yaml-0.2.5-h7f98852_2
  zipp               conda-forge/noarch::zipp-3.4.1-pyhd8ed1ab_0
  zlib               conda-forge/linux-64::zlib-1.2.13-hd590300_5

The following packages will be UPDATED:

  certifi                                  2016.9.26-py36_0 --> 2020.12.5-py36h5fab9bb_1
  pip                conda-forge/linux-64::pip-20.0.2-py36~ --> conda-forge/noarch::pip-21.0.1-pyhd8ed1ab_0
  wheel              conda-forge/linux-64::wheel-0.34.2-py~ --> conda-forge/noarch::wheel-0.36.2-pyhd3deb0d_0

The following packages will be DOWNGRADED:

  ld_impl_linux-64                          2.40-h55db66e_0 --> 2.39-hcc3a1bd_1



Downloading and Extracting Packages

libstdcxx-devel_linu | 9.9 MB    |            |   0% 
libstdcxx-devel_linu | 9.9 MB    |            |   0% 
libstdcxx-devel_linu | 9.9 MB    | 4          |   4% 
libstdcxx-devel_linu | 9.9 MB    | #9         |  20% 
libstdcxx-devel_linu | 9.9 MB    | ###7       |  37% 
libstdcxx-devel_linu | 9.9 MB    | #####3     |  54% 
libstdcxx-devel_linu | 9.9 MB    | ######8    |  69% 
libstdcxx-devel_linu | 9.9 MB    | ########5  |  86% 
libstdcxx-devel_linu | 9.9 MB    | ########## | 100% 

ld_impl_linux-64-2.3 | 675 KB    |            |   0% 
ld_impl_linux-64-2.3 | 675 KB    | ########## | 100% 
ld_impl_linux-64-2.3 | 675 KB    | ########## | 100% 

h5py-2.9.0           | 1.2 MB    |            |   0% 
h5py-2.9.0           | 1.2 MB    | ####9      |  50% 
h5py-2.9.0           | 1.2 MB    | ########## | 100% 
h5py-2.9.0           | 1.2 MB    | ########## | 100% 

bleach-1.5.0         | 23 KB     |            |   0% 
bleach-1.5.0         | 23 KB     | ########## | 100% 

tornado-6.1          | 643 KB    |            |   0% 
tornado-6.1          | 643 KB    | ########## | 100% 
tornado-6.1          | 643 KB    | ########## | 100% 

webencodings-0.5.1   | 15 KB     |            |   0% 
webencodings-0.5.1   | 15 KB     | ########## | 100% 
webencodings-0.5.1   | 15 KB     | ########## | 100% 

blas-1.1             | 1 KB      |            |   0% 
blas-1.1             | 1 KB      | ########## | 100% 

libgcc-devel_linux-6 | 4.0 MB    |            |   0% 
libgcc-devel_linux-6 | 4.0 MB    | ##3        |  24% 
libgcc-devel_linux-6 | 4.0 MB    | ######6    |  67% 
libgcc-devel_linux-6 | 4.0 MB    | ########## | 100% 

sysroot_linux-64-2.1 | 14.4 MB   |            |   0% 
sysroot_linux-64-2.1 | 14.4 MB   | 5          |   6% 
sysroot_linux-64-2.1 | 14.4 MB   | #7         |  17% 
sysroot_linux-64-2.1 | 14.4 MB   | ##8        |  29% 
sysroot_linux-64-2.1 | 14.4 MB   | ####       |  41% 
sysroot_linux-64-2.1 | 14.4 MB   | #####2     |  52% 
sysroot_linux-64-2.1 | 14.4 MB   | ######3    |  64% 
sysroot_linux-64-2.1 | 14.4 MB   | #######5   |  75% 
sysroot_linux-64-2.1 | 14.4 MB   | ########7  |  87% 
sysroot_linux-64-2.1 | 14.4 MB   | #########8 |  99% 
sysroot_linux-64-2.1 | 14.4 MB   | ########## | 100% 

dbus-1.13.6          | 604 KB    |            |   0% 
dbus-1.13.6          | 604 KB    | ########## | 100% 
dbus-1.13.6          | 604 KB    | ########## | 100% 

pygpu-0.7.6          | 657 KB    |            |   0% 
pygpu-0.7.6          | 657 KB    | #########4 |  95% 
pygpu-0.7.6          | 657 KB    | ########## | 100% 

pyyaml-5.4.1         | 194 KB    |            |   0% 
pyyaml-5.4.1         | 194 KB    | ########## | 100% 
pyyaml-5.4.1         | 194 KB    | ########## | 100% 

gxx_linux-64-9.5.0   | 28 KB     |            |   0% 
gxx_linux-64-9.5.0   | 28 KB     | ########## | 100% 
gxx_linux-64-9.5.0   | 28 KB     | ########## | 100% 

pandas-0.25.3        | 8.8 MB    |            |   0% 
pandas-0.25.3        | 8.8 MB    |            |   0% 
pandas-0.25.3        | 8.8 MB    |            |   1% 
pandas-0.25.3        | 8.8 MB    | 1          |   2% 
pandas-0.25.3        | 8.8 MB    | 4          |   4% 
pandas-0.25.3        | 8.8 MB    | 8          |   8% 
pandas-0.25.3        | 8.8 MB    | #3         |  14% 
pandas-0.25.3        | 8.8 MB    | ##         |  21% 
pandas-0.25.3        | 8.8 MB    | ##7        |  28% 
pandas-0.25.3        | 8.8 MB    | ###4       |  35% 
pandas-0.25.3        | 8.8 MB    | ####2      |  42% 
pandas-0.25.3        | 8.8 MB    | ####9      |  49% 
pandas-0.25.3        | 8.8 MB    | #####6     |  56% 
pandas-0.25.3        | 8.8 MB    | ######3    |  64% 
pandas-0.25.3        | 8.8 MB    | #######    |  71% 
pandas-0.25.3        | 8.8 MB    | #######7   |  78% 
pandas-0.25.3        | 8.8 MB    | ########4  |  85% 
pandas-0.25.3        | 8.8 MB    | #########2 |  92% 
pandas-0.25.3        | 8.8 MB    | #########9 |  99% 
pandas-0.25.3        | 8.8 MB    | ########## | 100% 

gpy-1.9.8            | 1.6 MB    |            |   0% 
gpy-1.9.8            | 1.6 MB    | #1         |  12% 
gpy-1.9.8            | 1.6 MB    | ########## | 100% 
gpy-1.9.8            | 1.6 MB    | ########## | 100% 

viennarna-2.4.5      | 9.7 MB    |            |   0% 
viennarna-2.4.5      | 9.7 MB    |            |   0% 
viennarna-2.4.5      | 9.7 MB    | #7         |  18% 
viennarna-2.4.5      | 9.7 MB    | ###2       |  32% 
viennarna-2.4.5      | 9.7 MB    | ####7      |  48% 
viennarna-2.4.5      | 9.7 MB    | ######5    |  65% 
viennarna-2.4.5      | 9.7 MB    | ########2  |  83% 
viennarna-2.4.5      | 9.7 MB    | ########## | 100% 
viennarna-2.4.5      | 9.7 MB    | ########## | 100% 

matplotlib-3.1.1     | 5.0 MB    |            |   0% 
matplotlib-3.1.1     | 5.0 MB    | 3          |   3% 
matplotlib-3.1.1     | 5.0 MB    | #6         |  16% 
matplotlib-3.1.1     | 5.0 MB    | ##8        |  29% 
matplotlib-3.1.1     | 5.0 MB    | ####1      |  42% 
matplotlib-3.1.1     | 5.0 MB    | #####4     |  54% 
matplotlib-3.1.1     | 5.0 MB    | ######7    |  67% 
matplotlib-3.1.1     | 5.0 MB    | ########   |  80% 
matplotlib-3.1.1     | 5.0 MB    | #########2 |  93% 
matplotlib-3.1.1     | 5.0 MB    | ########## | 100% 

paramz-0.9.5         | 60 KB     |            |   0% 
paramz-0.9.5         | 60 KB     | ########## | 100% 

gcc_impl_linux-64-9. | 43.5 MB   |            |   0% 
gcc_impl_linux-64-9. | 43.5 MB   | 2          |   2% 
gcc_impl_linux-64-9. | 43.5 MB   | 6          |   6% 
gcc_impl_linux-64-9. | 43.5 MB   | #          |  10% 
gcc_impl_linux-64-9. | 43.5 MB   | #4         |  14% 
gcc_impl_linux-64-9. | 43.5 MB   | #8         |  18% 
gcc_impl_linux-64-9. | 43.5 MB   | ##2        |  22% 
gcc_impl_linux-64-9. | 43.5 MB   | ##6        |  26% 
gcc_impl_linux-64-9. | 43.5 MB   | ###        |  30% 
gcc_impl_linux-64-9. | 43.5 MB   | ###4       |  34% 
gcc_impl_linux-64-9. | 43.5 MB   | ###7       |  37% 
gcc_impl_linux-64-9. | 43.5 MB   | ####1      |  41% 
gcc_impl_linux-64-9. | 43.5 MB   | ####5      |  45% 
gcc_impl_linux-64-9. | 43.5 MB   | ####9      |  49% 
gcc_impl_linux-64-9. | 43.5 MB   | #####2     |  53% 
gcc_impl_linux-64-9. | 43.5 MB   | #####6     |  57% 
gcc_impl_linux-64-9. | 43.5 MB   | ######     |  60% 
gcc_impl_linux-64-9. | 43.5 MB   | ######4    |  64% 
gcc_impl_linux-64-9. | 43.5 MB   | ######8    |  68% 
gcc_impl_linux-64-9. | 43.5 MB   | #######2   |  72% 
gcc_impl_linux-64-9. | 43.5 MB   | #######5   |  76% 
gcc_impl_linux-64-9. | 43.5 MB   | #######9   |  80% 
gcc_impl_linux-64-9. | 43.5 MB   | ########3  |  84% 
gcc_impl_linux-64-9. | 43.5 MB   | ########7  |  88% 
gcc_impl_linux-64-9. | 43.5 MB   | #########1 |  92% 
gcc_impl_linux-64-9. | 43.5 MB   | #########5 |  96% 
gcc_impl_linux-64-9. | 43.5 MB   | #########9 | 100% 
gcc_impl_linux-64-9. | 43.5 MB   | ########## | 100% 

binutils_linux-64-2. | 27 KB     |            |   0% 
binutils_linux-64-2. | 27 KB     | ########## | 100% 
binutils_linux-64-2. | 27 KB     | ########## | 100% 

gcc_linux-64-9.5.0   | 29 KB     |            |   0% 
gcc_linux-64-9.5.0   | 29 KB     | ########## | 100% 
gcc_linux-64-9.5.0   | 29 KB     | ########## | 100% 

libsanitizer-9.5.0   | 6.9 MB    |            |   0% 
libsanitizer-9.5.0   | 6.9 MB    | #3         |  14% 
libsanitizer-9.5.0   | 6.9 MB    | ###8       |  39% 
libsanitizer-9.5.0   | 6.9 MB    | ######2    |  62% 
libsanitizer-9.5.0   | 6.9 MB    | ########6  |  87% 
libsanitizer-9.5.0   | 6.9 MB    | ########## | 100% 

kiwisolver-1.3.1     | 78 KB     |            |   0% 
kiwisolver-1.3.1     | 78 KB     | ########## | 100% 

grpcio-1.36.1        | 2.1 MB    |            |   0% 
grpcio-1.36.1        | 2.1 MB    | #####2     |  52% 
grpcio-1.36.1        | 2.1 MB    | ########## | 100% 

qt-5.9.7             | 68.5 MB   |            |   0% 
qt-5.9.7             | 68.5 MB   |            |   0% 
qt-5.9.7             | 68.5 MB   | 1          |   1% 
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qt-5.9.7             | 68.5 MB   | 9          |  10% 
qt-5.9.7             | 68.5 MB   | #          |  11% 
qt-5.9.7             | 68.5 MB   | #1         |  11% 
qt-5.9.7             | 68.5 MB   | #2         |  12% 
qt-5.9.7             | 68.5 MB   | #3         |  13% 
qt-5.9.7             | 68.5 MB   | #4         |  14% 
qt-5.9.7             | 68.5 MB   | #5         |  15% 
qt-5.9.7             | 68.5 MB   | #6         |  16% 
qt-5.9.7             | 68.5 MB   | #7         |  17% 
qt-5.9.7             | 68.5 MB   | #7         |  18% 
qt-5.9.7             | 68.5 MB   | #8         |  19% 
qt-5.9.7             | 68.5 MB   | #9         |  20% 
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qt-5.9.7             | 68.5 MB   | ###        |  30% 
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qt-5.9.7             | 68.5 MB   | ###1       |  32% 
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qt-5.9.7             | 68.5 MB   | ####       |  40% 
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qt-5.9.7             | 68.5 MB   | ######     |  61% 
qt-5.9.7             | 68.5 MB   | ######1    |  61% 
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qt-5.9.7             | 68.5 MB   | #######    |  71% 
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qt-5.9.7             | 68.5 MB   | ########   |  81% 
qt-5.9.7             | 68.5 MB   | ########1  |  82% 
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qt-5.9.7             | 68.5 MB   | ########6  |  86% 
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qt-5.9.7             | 68.5 MB   | ########9  |  89% 
qt-5.9.7             | 68.5 MB   | #########  |  90% 
qt-5.9.7             | 68.5 MB   | #########1 |  91% 
qt-5.9.7             | 68.5 MB   | #########1 |  92% 
qt-5.9.7             | 68.5 MB   | #########2 |  93% 
qt-5.9.7             | 68.5 MB   | #########3 |  94% 
qt-5.9.7             | 68.5 MB   | #########4 |  95% 
qt-5.9.7             | 68.5 MB   | #########5 |  96% 
qt-5.9.7             | 68.5 MB   | #########6 |  96% 
qt-5.9.7             | 68.5 MB   | #########7 |  97% 
qt-5.9.7             | 68.5 MB   | #########8 |  98% 
qt-5.9.7             | 68.5 MB   | #########9 |  99% 
qt-5.9.7             | 68.5 MB   | ########## | 100% 

tensorboard-1.8.0    | 3.1 MB    |            |   0% 
tensorboard-1.8.0    | 3.1 MB    | ##6        |  27% 
tensorboard-1.8.0    | 3.1 MB    | ########1  |  82% 
tensorboard-1.8.0    | 3.1 MB    | ########## | 100% 

scikit-learn-0.19.1  | 12.8 MB   |            |   0% 
scikit-learn-0.19.1  | 12.8 MB   | 3          |   4% 
scikit-learn-0.19.1  | 12.8 MB   | #7         |  17% 
scikit-learn-0.19.1  | 12.8 MB   | ###        |  30% 
scikit-learn-0.19.1  | 12.8 MB   | ####3      |  44% 
scikit-learn-0.19.1  | 12.8 MB   | #####6     |  57% 
scikit-learn-0.19.1  | 12.8 MB   | #######    |  70% 
scikit-learn-0.19.1  | 12.8 MB   | ########3  |  83% 
scikit-learn-0.19.1  | 12.8 MB   | #########5 |  96% 
scikit-learn-0.19.1  | 12.8 MB   | ########## | 100% 

glib-2.80.0          | 584 KB    |            |   0% 
glib-2.80.0          | 584 KB    | ########## | 100% 
glib-2.80.0          | 584 KB    | ########## | 100% 

html5lib-0.9999999   | 181 KB    |            |   0% 
html5lib-0.9999999   | 181 KB    | ########## | 100% 
html5lib-0.9999999   | 181 KB    | ########## | 100% 

glib-tools-2.80.0    | 110 KB    |            |   0% 
glib-tools-2.80.0    | 110 KB    | ########## | 100% 
glib-tools-2.80.0    | 110 KB    | ########## | 100% 

kernel-headers_linux | 694 KB    |            |   0% 
kernel-headers_linux | 694 KB    | ########## | 100% 
kernel-headers_linux | 694 KB    | ########## | 100% 

markupsafe-1.1.1     | 27 KB     |            |   0% 
markupsafe-1.1.1     | 27 KB     | ########## | 100% 

pyqt-5.9.2           | 5.7 MB    |            |   0% 
pyqt-5.9.2           | 5.7 MB    | #8         |  19% 
pyqt-5.9.2           | 5.7 MB    | ####8      |  49% 
pyqt-5.9.2           | 5.7 MB    | #######8   |  78% 
pyqt-5.9.2           | 5.7 MB    | ########## | 100% 

numpy-1.14.0         | 9.0 MB    |            |   0% 
numpy-1.14.0         | 9.0 MB    | 7          |   7% 
numpy-1.14.0         | 9.0 MB    | ##         |  21% 
numpy-1.14.0         | 9.0 MB    | ###8       |  39% 
numpy-1.14.0         | 9.0 MB    | #####7     |  58% 
numpy-1.14.0         | 9.0 MB    | #######6   |  77% 
numpy-1.14.0         | 9.0 MB    | #########5 |  96% 
numpy-1.14.0         | 9.0 MB    | ########## | 100% 

pcre2-10.43          | 929 KB    |            |   0% 
pcre2-10.43          | 929 KB    | ########## | 100% 
pcre2-10.43          | 929 KB    | ########## | 100% 

hdf5-1.10.4          | 5.3 MB    |            |   0% 
hdf5-1.10.4          | 5.3 MB    | #7         |  18% 
hdf5-1.10.4          | 5.3 MB    | #####      |  50% 
hdf5-1.10.4          | 5.3 MB    | ########1  |  82% 
hdf5-1.10.4          | 5.3 MB    | ########## | 100% 

gst-plugins-base-1.1 | 2.2 MB    |            |   0% 
gst-plugins-base-1.1 | 2.2 MB    | #5         |  15% 
gst-plugins-base-1.1 | 2.2 MB    | ####4      |  44% 
gst-plugins-base-1.1 | 2.2 MB    | #######4   |  74% 
gst-plugins-base-1.1 | 2.2 MB    | ########## | 100% 

binutils_impl_linux- | 4.7 MB    |            |   0% 
binutils_impl_linux- | 4.7 MB    | ##1        |  22% 
binutils_impl_linux- | 4.7 MB    | #####7     |  58% 
binutils_impl_linux- | 4.7 MB    | #########3 |  94% 
binutils_impl_linux- | 4.7 MB    | ########## | 100% 

gxx_impl_linux-64-9. | 10.6 MB   |            |   0% 
gxx_impl_linux-64-9. | 10.6 MB   | 6          |   7% 
gxx_impl_linux-64-9. | 10.6 MB   | ##2        |  23% 
gxx_impl_linux-64-9. | 10.6 MB   | ###8       |  39% 
gxx_impl_linux-64-9. | 10.6 MB   | #####4     |  55% 
gxx_impl_linux-64-9. | 10.6 MB   | #######    |  71% 
gxx_impl_linux-64-9. | 10.6 MB   | ########7  |  87% 
gxx_impl_linux-64-9. | 10.6 MB   | ########## | 100% 

dotmap-1.2.20        | 8 KB      |            |   0% 
dotmap-1.2.20        | 8 KB      | ########## | 100% 

keras-2.1.6          | 500 KB    |            |   0% 
keras-2.1.6          | 500 KB    | ########## | 100% 
keras-2.1.6          | 500 KB    | ########## | 100% 

astor-0.8.1          | 25 KB     |            |   0% 
astor-0.8.1          | 25 KB     | ########## | 100% 

sip-4.19.8           | 290 KB    |            |   0% 
sip-4.19.8           | 290 KB    | ########## | 100% 
sip-4.19.8           | 290 KB    | ########## | 100% 

libglib-2.80.0       | 3.8 MB    |            |   0% 
libglib-2.80.0       | 3.8 MB    | ##5        |  25% 
libglib-2.80.0       | 3.8 MB    | #######    |  71% 
libglib-2.80.0       | 3.8 MB    | ########## | 100% 

scipy-1.1.0          | 40.3 MB   |            |   0% 
scipy-1.1.0          | 40.3 MB   | 1          |   2% 
scipy-1.1.0          | 40.3 MB   | 5          |   6% 
scipy-1.1.0          | 40.3 MB   | 9          |  10% 
scipy-1.1.0          | 40.3 MB   | #3         |  14% 
scipy-1.1.0          | 40.3 MB   | #7         |  18% 
scipy-1.1.0          | 40.3 MB   | ##1        |  22% 
scipy-1.1.0          | 40.3 MB   | ##5        |  25% 
scipy-1.1.0          | 40.3 MB   | ##9        |  29% 
scipy-1.1.0          | 40.3 MB   | ###3       |  33% 
scipy-1.1.0          | 40.3 MB   | ###7       |  37% 
scipy-1.1.0          | 40.3 MB   | ####1      |  41% 
scipy-1.1.0          | 40.3 MB   | ####5      |  45% 
scipy-1.1.0          | 40.3 MB   | ####9      |  49% 
scipy-1.1.0          | 40.3 MB   | #####3     |  54% 
scipy-1.1.0          | 40.3 MB   | #####7     |  58% 
scipy-1.1.0          | 40.3 MB   | ######1    |  62% 
scipy-1.1.0          | 40.3 MB   | ######6    |  66% 
scipy-1.1.0          | 40.3 MB   | #######    |  70% 
scipy-1.1.0          | 40.3 MB   | #######4   |  74% 
scipy-1.1.0          | 40.3 MB   | #######8   |  78% 
scipy-1.1.0          | 40.3 MB   | ########2  |  82% 
scipy-1.1.0          | 40.3 MB   | ########6  |  86% 
scipy-1.1.0          | 40.3 MB   | #########  |  91% 
scipy-1.1.0          | 40.3 MB   | #########4 |  95% 
scipy-1.1.0          | 40.3 MB   | #########9 |  99% 
scipy-1.1.0          | 40.3 MB   | ########## | 100% 

gpyopt-1.2.6         | 56 KB     |            |   0% 
gpyopt-1.2.6         | 56 KB     | ########## | 100% 
gpyopt-1.2.6         | 56 KB     | ########## | 100% 

theano-1.0.5         | 3.7 MB    |            |   0% 
theano-1.0.5         | 3.7 MB    | #9         |  19% 
theano-1.0.5         | 3.7 MB    | ######5    |  65% 
theano-1.0.5         | 3.7 MB    | ########## | 100% 

openblas-0.2.20      | 17.0 MB   |            |   0% 
openblas-0.2.20      | 17.0 MB   |            |   0% 
openblas-0.2.20      | 17.0 MB   | 8          |   8% 
openblas-0.2.20      | 17.0 MB   | #7         |  18% 
openblas-0.2.20      | 17.0 MB   | ##7        |  28% 
openblas-0.2.20      | 17.0 MB   | ###7       |  38% 
openblas-0.2.20      | 17.0 MB   | ####7      |  47% 
openblas-0.2.20      | 17.0 MB   | #####7     |  57% 
openblas-0.2.20      | 17.0 MB   | ######7    |  67% 
openblas-0.2.20      | 17.0 MB   | #######6   |  77% 
openblas-0.2.20      | 17.0 MB   | ########6  |  87% 
openblas-0.2.20      | 17.0 MB   | #########6 |  97% 
openblas-0.2.20      | 17.0 MB   | ########## | 100% 

libgfortran-3.0.0    | 281 KB    |            |   0% 
libgfortran-3.0.0    | 281 KB    | ########## | 100% 
libgfortran-3.0.0    | 281 KB    | ########## | 100% 

biopython-1.71       | 2.6 MB    |            |   0% 
biopython-1.71       | 2.6 MB    |            |   1% 
biopython-1.71       | 2.6 MB    | ######1    |  62% 
biopython-1.71       | 2.6 MB    | ########## | 100% 
biopython-1.71       | 2.6 MB    | ########## | 100% 

tensorflow-1.8.0     | 42.1 MB   |            |   0% 
tensorflow-1.8.0     | 42.1 MB   | 2          |   2% 
tensorflow-1.8.0     | 42.1 MB   | 6          |   6% 
tensorflow-1.8.0     | 42.1 MB   | 9          |  10% 
tensorflow-1.8.0     | 42.1 MB   | #3         |  14% 
tensorflow-1.8.0     | 42.1 MB   | #7         |  18% 
tensorflow-1.8.0     | 42.1 MB   | ##1        |  22% 
tensorflow-1.8.0     | 42.1 MB   | ##5        |  26% 
tensorflow-1.8.0     | 42.1 MB   | ##9        |  30% 
tensorflow-1.8.0     | 42.1 MB   | ###3       |  34% 
tensorflow-1.8.0     | 42.1 MB   | ###7       |  38% 
tensorflow-1.8.0     | 42.1 MB   | ####1      |  42% 
tensorflow-1.8.0     | 42.1 MB   | ####5      |  46% 
tensorflow-1.8.0     | 42.1 MB   | ####9      |  50% 
tensorflow-1.8.0     | 42.1 MB   | #####3     |  54% 
tensorflow-1.8.0     | 42.1 MB   | #####7     |  58% 
tensorflow-1.8.0     | 42.1 MB   | ######1    |  62% 
tensorflow-1.8.0     | 42.1 MB   | ######5    |  66% 
tensorflow-1.8.0     | 42.1 MB   | ######9    |  70% 
tensorflow-1.8.0     | 42.1 MB   | #######3   |  74% 
tensorflow-1.8.0     | 42.1 MB   | #######7   |  78% 
tensorflow-1.8.0     | 42.1 MB   | ########1  |  82% 
tensorflow-1.8.0     | 42.1 MB   | ########5  |  86% 
tensorflow-1.8.0     | 42.1 MB   | ########9  |  90% 
tensorflow-1.8.0     | 42.1 MB   | #########3 |  94% 
tensorflow-1.8.0     | 42.1 MB   | #########7 |  98% 
tensorflow-1.8.0     | 42.1 MB   | ########## | 100% 

gstreamer-1.14.1     | 1.7 MB    |            |   0% 
gstreamer-1.14.1     | 1.7 MB    | #4         |  14% 
gstreamer-1.14.1     | 1.7 MB    | #####2     |  53% 
gstreamer-1.14.1     | 1.7 MB    | #########  |  90% 
gstreamer-1.14.1     | 1.7 MB    | ########## | 100% 
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Processing /home/biocbuild/bbs-3.19-bioc-longtests/meat/crisprScore.Rcheck/crisprScore/python/deephf
Requirement already satisfied: scipy==1.1.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from DeepHF==1.0) (1.1.0)
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Requirement already satisfied: tensorflow==1.8.0 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from DeepHF==1.0) (1.8.0)
Requirement already satisfied: keras==2.1.6 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from DeepHF==1.0) (2.1.6)
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Requirement already satisfied: matplotlib in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from DeepHF==1.0) (3.1.1)
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Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from matplotlib->DeepHF==1.0) (2.4.7)
Requirement already satisfied: python-dateutil>=2.1 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from matplotlib->DeepHF==1.0) (2.8.1)
Requirement already satisfied: pytz>=2017.2 in /var/cache/basilisk/1.16.0/crisprScore/1.8.0/deephf_basilisk/lib/python3.6/site-packages (from pandas->DeepHF==1.0) (2021.1)
Building wheels for collected packages: DeepHF
  Building wheel for DeepHF (setup.py): started
  Building wheel for DeepHF (setup.py): finished with status 'done'
  Created wheel for DeepHF: filename=DeepHF-1.0-py3-none-any.whl size=10632 sha256=89cd00bbac8fe451e767d9205b6131b489406a61f522a2799bd17986623fbf75
  Stored in directory: /tmp/pip-ephem-wheel-cache-ztqa1rm1/wheels/aa/67/49/62993cf3e944926127b040b634c9ef00cd4f6f44ed2300d453
Successfully built DeepHF
Installing collected packages: DeepHF
Successfully installed DeepHF-1.0
[ FAIL 0 | WARN 10 | SKIP 0 | PASS 8 ]

[ FAIL 0 | WARN 10 | SKIP 0 | PASS 8 ]
> 
> proc.time()
    user   system  elapsed 
1869.383   75.834 2086.836 

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no crisprScore_1.8.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.19-bioc-longtests/meat/crisprScore.Rcheck’
* using R version 4.4.0 beta (2024-04-15 r86425)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘crisprScore/DESCRIPTION’ ... OK
* this is package ‘crisprScore’ version ‘1.8.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... NOTE
Found the following non-portable file paths:
  crisprScore/inst/python/deepspcas9/DeepCas9_Final/PreTrain-Final-False-3-5-7-100-70-40-0.001-550-True-80-60.data-00000-of-00001
  crisprScore/inst/python/deepspcas9/DeepCas9_Final/PreTrain-Final-False-3-5-7-100-70-40-0.001-550-True-80-60.index
  crisprScore/inst/python/deepspcas9/DeepCas9_Final/PreTrain-Final-False-3-5-7-100-70-40-0.001-550-True-80-60.meta

Tarballs are only required to store paths of up to 100 bytes and cannot
store those of more than 256 bytes, with restrictions including to 100
bytes for the final component.
See section ‘Package structure’ in the ‘Writing R Extensions’ manual.
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘crisprScore’ can be installed ... NOTE
Found the following notes/warnings:
  Non-staged installation was used
See ‘/home/biocbuild/bbs-3.19-bioc-longtests/meat/crisprScore.Rcheck/00install.out’ for details.
* checking installed package size ... NOTE
  installed size is  5.5Mb
  sub-directories of 1Mb or more:
    python   4.2Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... NOTE
':::' call which should be '::': ‘basilisk.utils:::getPythonBinary’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking line endings in shell scripts ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... OK
* checking include directives in Makefiles ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 OK
* DONE

Status: 5 NOTEs
See
  ‘/home/biocbuild/bbs-3.19-bioc-longtests/meat/crisprScore.Rcheck/00check.log’
for details.


Installation output

crisprScore.Rcheck/00install.out

* installing *source* package ‘crisprScore’ ...
** using non-staged installation via StagedInstall field
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (crisprScore)