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### Running command:
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###   /home/biocbuild/R/R-4.3.1/bin/R CMD check --install=check:ChIPpeakAnno.install-out.txt --library=/home/biocbuild/R/R-4.3.1/site-library --no-vignettes --timings ChIPpeakAnno_3.36.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/ChIPpeakAnno.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (GCC) 10.3.1
    GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ChIPpeakAnno/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ChIPpeakAnno’ version ‘3.36.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ChIPpeakAnno’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 19.1Mb
  sub-directories of 1Mb or more:
    data     12.6Mb
    extdata   5.2Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘ensembldb’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) assignChromosomeRegion.Rd:133: Escaped LaTeX specials: \_
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘ChIPpeakAnno-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: addMetadata
> ### Title: Add metadata of the GRanges objects used for findOverlapsOfPeaks
> ### Aliases: addMetadata
> ### Keywords: misc
> 
> ### ** Examples
> 
> 
> peaks1 <- GRanges(seqnames=c(6,6,6,6,5),
+                  IRanges(start=c(1543200,1557200,1563000,1569800,167889600),
+                          end=c(1555199,1560599,1565199,1573799,167893599),
+                          names=c("p1","p2","p3","p4","p5")),
+                  strand="+",
+                  score=1:5, id=letters[1:5])
> peaks2 <- GRanges(seqnames=c(6,6,6,6,5),
+                   IRanges(start=c(1549800,1554400,1565000,1569400,167888600),
+                           end=c(1550599,1560799,1565399,1571199,167888999),
+                           names=c("f1","f2","f3","f4","f5")),
+                   strand="+",
+                   score=6:10, id=LETTERS[1:5])
> ol <- findOverlapsOfPeaks(peaks1, peaks2)
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’/home/biocbuild/R/R-4.3.1/bin/BATCH: line 60: 514688 Killed                  ${R_HOME}/bin/R -f ${in} ${opts} ${R_BATCH_OPTIONS} > ${out} 2>&1

 ERROR
Running the tests in ‘tests/runTests.R’ failed.
Last 13 lines of output:
  [1] TRUE
  > require("reactome.db") || stop("unable to load reactome.db")
  Loading required package: reactome.db
  [1] TRUE
  > require("testthat") || stop("unable to load testthat")
  Loading required package: testthat
  
  Attaching package: 'testthat'
  
  The following object is masked from 'package:AnnotationFilter':
  
      not
  
  [1] TRUE
  > test_check("ChIPpeakAnno")
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 ERRORs, 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.18-bioc/meat/ChIPpeakAnno.Rcheck/00check.log’
for details.