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This page was generated on 2023-10-12 14:51:36 -0400 (Thu, 12 Oct 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 315/421 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
RforProteomics 1.38.1 (landing page) Laurent Gatto
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | ERROR | skipped | ||||||||
To the developers/maintainers of the RforProteomics package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: RforProteomics |
Version: 1.38.1 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data RforProteomics |
StartedAt: 2023-10-12 10:46:41 -0400 (Thu, 12 Oct 2023) |
EndedAt: 2023-10-12 10:47:44 -0400 (Thu, 12 Oct 2023) |
EllapsedTime: 62.8 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data RforProteomics ### ############################################################################## ############################################################################## * checking for file ‘RforProteomics/DESCRIPTION’ ... OK * preparing ‘RforProteomics’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘RProtVis.Rmd’ using rmarkdown Quitting from lines 172-202 [makemadata] (RProtVis.Rmd) Error: processing vignette 'RProtVis.Rmd' failed with diagnostics: No files to download. --- failed re-building ‘RProtVis.Rmd’ --- re-building ‘RforProteomics.Rmd’ using rmarkdown starting worker pid=2938695 on localhost:11277 at 10:47:40.459 starting worker pid=2938694 on localhost:11277 at 10:47:40.461 Loading required package: mzID Loading required package: mzID loaded mzID and set parent environment loaded mzID and set parent environment reading 55merge_omssa.mzid... reading 55merge_tandem.mzid... 55merge_omssa.mzid DONE! 55merge_tandem.mzid DONE! Quitting from lines 384-392 [downloadmztab] (RforProteomics.Rmd) Error: processing vignette 'RforProteomics.Rmd' failed with diagnostics: No files to download. --- failed re-building ‘RforProteomics.Rmd’ SUMMARY: processing the following files failed: ‘RProtVis.Rmd’ ‘RforProteomics.Rmd’ Error: Vignette re-building failed. Execution halted