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This page was generated on 2023-10-20 09:38:02 -0400 (Fri, 20 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson2macOS 12.6.1 Montereyarm644.3.1 (2023-06-16) -- "Beagle Scouts" 4347
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 688/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
fcoex 1.14.0  (landing page)
Tiago Lubiana
Snapshot Date: 2023-10-15 14:00:07 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/fcoex
git_branch: RELEASE_3_17
git_last_commit: a27a8dc
git_last_commit_date: 2023-04-25 11:14:01 -0400 (Tue, 25 Apr 2023)
kjohnson2macOS 12.6.1 Monterey / arm64  OK    ERROR  skippedskipped

BUILD results for fcoex on kjohnson2


To the developers/maintainers of the fcoex package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: fcoex
Version: 1.14.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data fcoex
StartedAt: 2023-10-16 03:11:38 -0400 (Mon, 16 Oct 2023)
EndedAt: 2023-10-16 03:13:24 -0400 (Mon, 16 Oct 2023)
EllapsedTime: 105.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data fcoex
###
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* checking for file ‘fcoex/DESCRIPTION’ ... OK
* preparing ‘fcoex’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘fcoex.Rmd’ using rmarkdown

Quitting from lines 91-92 [Finding cbf modules] (fcoex.Rmd)
Error: processing vignette 'fcoex.Rmd' failed with diagnostics:
cannot xtfrm data frames
--- failed re-building ‘fcoex.Rmd’

--- re-building ‘fcoex_and_seurat.Rmd’ using rmarkdown

Quitting from lines 29-42 [Running Seurat pipeline] (fcoex_and_seurat.Rmd)
Error: processing vignette 'fcoex_and_seurat.Rmd' failed with diagnostics:
cannot xtfrm data frames
--- failed re-building ‘fcoex_and_seurat.Rmd’

SUMMARY: processing the following files failed:
  ‘fcoex.Rmd’ ‘fcoex_and_seurat.Rmd’

Error: Vignette re-building failed.
Execution halted