############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL DNAcopy ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘DNAcopy’ ... ** using staged installation ** libs using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ using Fortran compiler: ‘GNU Fortran (GCC) 12.2.0’ using SDK: ‘MacOSX11.3.sdk’ /opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c cbsWtstats.f -o cbsWtstats.o cbsWtstats.f:283:72: 283 | iseg(2) = tmaxj | ^ Warning: ‘tmaxj’ may be used uninitialized [-Wmaybe-uninitialized] cbsWtstats.f:17:23: 17 | 2 tmaxi, tmaxj, nal0 | ^ note: ‘tmaxj’ was declared here cbsWtstats.f:282:72: 282 | iseg(1) = tmaxi | ^ Warning: ‘tmaxi’ may be used uninitialized [-Wmaybe-uninitialized] cbsWtstats.f:17:16: 17 | 2 tmaxi, tmaxj, nal0 | ^ note: ‘tmaxi’ was declared here /opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c cbststats.f -o cbststats.o cbststats.f:11:63: 11 | 1 nb2, bi, bj, ilo, ihi, jlo, jhi, alenmax, i2j, sxmxi, | ^ Warning: ‘sxmxi’ may be used uninitialized [-Wmaybe-uninitialized] /opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c changepoints-wtd.f -o changepoints-wtd.o /opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c changepoints.f -o changepoints.o /opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c esegment.f -o esegment.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c flchoose.c -o flchoose.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c fphyper.c -o fphyper.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c fpnorm.c -o fpnorm.o /opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c getbdry.f -o getbdry.o /opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c prune.f -o prune.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c rshared.c -o rshared.o /opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c segmentp.f -o segmentp.o /opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c smoothCNA.f -o smoothCNA.o /opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c tailprobs.f -o tailprobs.o clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o DNAcopy.so cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o smoothCNA.o tailprobs.o -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lemutls_w -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation ld: warning: could not create compact unwind for _wtmaxo_: registers 74 and 75 not saved contiguously in frame ld: warning: could not create compact unwind for _wtmaxp_: register 77 saved somewhere other than in frame ld: warning: could not create compact unwind for _hwtmaxp_: register 75 saved somewhere other than in frame ld: warning: could not create compact unwind for _tmaxo_: register 77 saved somewhere other than in frame ld: warning: could not create compact unwind for _tmaxp_: register 75 saved somewhere other than in frame ld: warning: could not create compact unwind for _htmaxp_: register 73 saved somewhere other than in frame ld: warning: could not create compact unwind for _wtpermp_: register 77 saved somewhere other than in frame ld: warning: could not create compact unwind for _wfindcpt_: register 73 saved somewhere other than in frame ld: warning: could not create compact unwind for _tpermp_: registers 74 and 75 not saved contiguously in frame ld: warning: could not create compact unwind for _fndcpt_: register 73 saved somewhere other than in frame ld: warning: could not create compact unwind for _etabdry_: register 73 saved somewhere other than in frame ld: warning: could not create compact unwind for _getbdry_: register 77 saved somewhere other than in frame ld: warning: could not create compact unwind for _prune_: registers 27 and 28 not saved contiguously in frame ld: warning: could not create compact unwind for _smoothlr_: register 75 saved somewhere other than in frame ld: warning: could not create compact unwind for _nu_: register 77 saved somewhere other than in frame ld: warning: could not create compact unwind for _tailp_: registers 78 and 79 not saved contiguously in frame ld: warning: could not create compact unwind for ___emutls_get_address: registers 23 and 24 not saved contiguously in frame installing to /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/00LOCK-DNAcopy/00new/DNAcopy/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DNAcopy)