Back to Mac ARM64 build report for BioC 3.17
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2023-10-20 09:37:59 -0400 (Fri, 20 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson2macOS 12.6.1 Montereyarm644.3.1 (2023-06-16) -- "Beagle Scouts" 4347
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 318/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ChemmineR 3.52.0  (landing page)
Thomas Girke
Snapshot Date: 2023-10-15 14:00:07 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/ChemmineR
git_branch: RELEASE_3_17
git_last_commit: 444df16
git_last_commit_date: 2023-04-25 09:47:42 -0400 (Tue, 25 Apr 2023)
kjohnson2macOS 12.6.1 Monterey / arm64  OK    ERROR  skippedskipped

BUILD results for ChemmineR on kjohnson2


To the developers/maintainers of the ChemmineR package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: ChemmineR
Version: 3.52.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ChemmineR
StartedAt: 2023-10-15 23:07:58 -0400 (Sun, 15 Oct 2023)
EndedAt: 2023-10-15 23:08:47 -0400 (Sun, 15 Oct 2023)
EllapsedTime: 48.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ChemmineR
###
##############################################################################
##############################################################################


* checking for file ‘ChemmineR/DESCRIPTION’ ... OK
* preparing ‘ChemmineR’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ChemmineR.Rmd’ using rmarkdown

Quitting from lines 538-539 [unnamed-chunk-39] (ChemmineR.Rmd)
Error: processing vignette 'ChemmineR.Rmd' failed with diagnostics:
cannot open the connection to 'https://cluster.hpcc.ucr.edu/~tgirke/Documents/R_BioCond/Samples/v3000.sdf'
--- failed re-building ‘ChemmineR.Rmd’

SUMMARY: processing the following file failed:
  ‘ChemmineR.Rmd’

Error: Vignette re-building failed.
Execution halted