| Back to Mac ARM64 build report for BioC 3.17 |
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This page was generated on 2023-10-20 09:38:00 -0400 (Fri, 20 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson2 | macOS 12.6.1 Monterey | arm64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4347 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 464/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| CSSP 1.38.0 (landing page) Chandler Zuo
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | OK | ERROR | skipped | skipped | ||||||||
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To the developers/maintainers of the CSSP package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: CSSP |
| Version: 1.38.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CSSP |
| StartedAt: 2023-10-16 00:47:39 -0400 (Mon, 16 Oct 2023) |
| EndedAt: 2023-10-16 00:47:49 -0400 (Mon, 16 Oct 2023) |
| EllapsedTime: 9.9 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CSSP ### ############################################################################## ############################################################################## * checking for file ‘CSSP/DESCRIPTION’ ... OK * preparing ‘CSSP’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘cssp.rnw’ using Sweave Read mappability file map_chr1.txt for chr1 Read mappability file map_chr2.txt for chr2 Read mappability file map_chr3.txt for chr3 Read mappability file map_chr4.txt for chr4 Read mappability file map_chr5.txt for chr5 Read GC file gc_chr1.txt for chromosome chr1 Read GC file gc_chr2.txt for chromosome chr2 Read GC file gc_chr3.txt for chromosome chr3 Read GC file gc_chr4.txt for chromosome chr4 Read GC file gc_chr5.txt for chromosome chr5 Read N file n_chr1.txt for chromosome chr1 Read N file n_chr2.txt for chromosome chr2 Read N file n_chr3.txt for chromosome chr3 Read N file n_chr4.txt for chromosome chr4 Read N file n_chr5.txt for chromosome chr5 chromosomes in chiptag contains chr1,chr2,chr3,chr4,chr5 chromosomes in inputtag contains chr1,chr2,chr3,chr4,chr5 chromosomes in mappability contains chr1,chr2,chr3,chr4,chr5 chromosomes in GC contains chr1,chr2,chr3,chr4,chr5 chromosomes in N contains chr1,chr2,chr3,chr4,chr5 chiptag contains 201 bins for chromosome chr1 Read in values for 199 bins for chromosome chr1 chiptag contains 201 bins for chromosome chr2 Read in values for 197 bins for chromosome chr2 chiptag contains 201 bins for chromosome chr3 Read in values for 201 bins for chromosome chr3 chiptag contains 201 bins for chromosome chr4 Read in values for 200 bins for chromosome chr4 chiptag contains 201 bins for chromosome chr5 Read in values for 201 bins for chromosome chr5 ===Constructing the design matrices=== Error: processing vignette 'cssp.rnw' failed with diagnostics: chunk 5 (label = 3) Error in splines::bs(map, knots = quantile(map[map < 0.9], prob = seq(0.1, : non-finite knots --- failed re-building ‘cssp.rnw’ SUMMARY: processing the following file failed: ‘cssp.rnw’ Error: Vignette re-building failed. Execution halted