Chandler Zuo
| Snapshot Date: 2023-03-24 09:42:44 -0400 (Fri, 24 Mar 2023) |
| git_url: https://git.bioconductor.org/packages/CSSP |
| git_branch: devel |
| git_last_commit: c1b5cc0 |
| git_last_commit_date: 2022-11-01 11:08:28 -0400 (Tue, 01 Nov 2022) |
| Back to Mac ARM64 build report for BioC 3.17 |
|
This page was generated on 2023-03-27 11:01:59 -0400 (Mon, 27 Mar 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson2 | macOS 12.6.1 Monterey | arm64 | R Under development (unstable) (2023-03-17 r83997) -- "Unsuffered Consequences" | 4168 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the CSSP package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 457/2195 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| CSSP 1.37.0 (landing page) Chandler Zuo
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | OK | OK | OK | OK | | |||||||
| Package: CSSP |
| Version: 1.37.0 |
| Command: rm -rf CSSP.buildbin-libdir && mkdir CSSP.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CSSP_1.37.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R CSSP.buildbin-libdir |
| StartedAt: 2023-03-25 10:40:34 -0400 (Sat, 25 Mar 2023) |
| EndedAt: 2023-03-25 10:40:39 -0400 (Sat, 25 Mar 2023) |
| EllapsedTime: 5.1 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: CSSP_1.37.0.tgz |
| PackageFileSize: 974.1 KiB |
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### Running command:
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### rm -rf CSSP.buildbin-libdir && mkdir CSSP.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CSSP_1.37.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R CSSP.buildbin-libdir
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=CSSP.buildbin-libdir CSSP_1.37.0.tar.gz'
>>>>>>>
* installing *source* package ‘CSSP’ ...
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX13.0.sdk’
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c bincount.c -o bincount.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c binpower.c -o binpower.o
binpower.c:152:16: warning: variable 'sum_w' set but not used [-Wunused-but-set-variable]
double w_bin,sum_w=0,sum_pow=0;
^
1 warning generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c gridLogMean.c -o gridLogMean.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c gridMGC.c -o gridMGC.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c gridMean.c -o gridMean.o
gridMean.c:10:63: warning: unused variable 'counter' [-Wunused-variable]
R_len_t ng=REAL(ngrid)[0],k,i,j,l,ind[4],n=length(map),newG,counter;
^
gridMean.c:177:63: warning: unused variable 'counter' [-Wunused-variable]
R_len_t ng=REAL(ngrid)[0],k,i,j,l,ind[2],n=length(map),newG,counter;
^
2 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c gridMode.c -o gridMode.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c gridNonpa.c -o gridNonpa.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c gridSample.c -o gridSample.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c tag2bin.c -o tag2bin.o
clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o CSSP.so bincount.o binpower.o gridLogMean.o gridMGC.o gridMean.o gridMode.o gridNonpa.o gridSample.o tag2bin.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: -undefined dynamic_lookup may not work with chained fixups
installing to /Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/CSSP.buildbin-libdir/00LOCK-CSSP/00new/CSSP/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CSSP)
>>>>>>>
>>>>>>> FIXING LINKS FOR CSSP.buildbin-libdir/CSSP/libs/CSSP.so
>>>>>>>
install_name_tool -change "/opt/R/arm64/lib/libgcc_s.1.1.dylib" "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libgcc_s.1.1.dylib" "CSSP.buildbin-libdir/CSSP/libs/CSSP.so"
install_name_tool -change "/opt/R/arm64/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libgfortran.5.dylib" "CSSP.buildbin-libdir/CSSP/libs/CSSP.so"
install_name_tool -change "/opt/R/arm64/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libquadmath.0.dylib" "CSSP.buildbin-libdir/CSSP/libs/CSSP.so"