############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL BHC ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘BHC’ ... ** using staged installation checking for gcc... clang -arch arm64 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether clang -arch arm64 accepts -g... yes checking for clang -arch arm64 option to accept ISO C89... none needed checking for clang -arch arm64 option to support OpenMP... unsupported configure: WARNING: No OpenMP support. If using GCC, upgrade to >= 4.2 configure: creating ./config.status config.status: creating src/Makevars ** libs using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ using SDK: ‘MacOSX11.3.sdk’ clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BlockCovarianceMatrix.cpp -o BlockCovarianceMatrix.o In file included from BlockCovarianceMatrix.cpp:15: In file included from ./BlockCovarianceMatrix.h:16: ./header.h:16:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined] #define NDEBUG ^ :1:9: note: previous definition is here #define NDEBUG 1 ^ 1 warning generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c CubicSplineTimecourseDataSet.cpp -o CubicSplineTimecourseDataSet.o In file included from CubicSplineTimecourseDataSet.cpp:15: In file included from ./CubicSplineTimecourseDataSet.h:20: In file included from ./TimecourseDataSet.h:20: In file included from ./DataSet.h:16: ./header.h:16:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined] #define NDEBUG ^ :1:9: note: previous definition is here #define NDEBUG 1 ^ In file included from CubicSplineTimecourseDataSet.cpp:15: ./CubicSplineTimecourseDataSet.h:29:10: warning: 'CubicSplineTimecourseDataSet::GetMLIINoise' hides overloaded virtual function [-Woverloaded-virtual] double GetMLIINoise(const vector& itemIndex); ^ ./TimecourseDataSet.h:36:10: note: hidden overloaded virtual function 'TimecourseDataSet::GetMLIINoise' declared here: type mismatch at 1st parameter ('vector' vs 'const vector &') double GetMLIINoise(vector itemIndex); ^ 2 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c DataSet.cpp -o DataSet.o In file included from DataSet.cpp:13: In file included from ./DataSet.h:16: ./header.h:16:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined] #define NDEBUG ^ :1:9: note: previous definition is here #define NDEBUG 1 ^ DataSet.cpp:36:48: warning: if statement has empty body [-Wempty-body] if(!system("PAUSE")) /* could not pause */ ; ^ DataSet.cpp:36:48: note: put the semicolon on a separate line to silence this warning 2 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c DirichletProcessMixture.cpp -o DirichletProcessMixture.o In file included from DirichletProcessMixture.cpp:15: In file included from ./DirichletProcessMixture.h:4: ./header.h:16:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined] #define NDEBUG ^ :1:9: note: previous definition is here #define NDEBUG 1 ^ DirichletProcessMixture.cpp:164:12: error: no member named 'random_shuffle' in namespace 'std' std::random_shuffle(random_id.begin(), random_id.end()); ~~~~~^ 1 warning and 1 error generated. make: *** [DirichletProcessMixture.o] Error 1 ERROR: compilation failed for package ‘BHC’ * removing ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/BHC’