Back to Long Tests report for BioC 3.17

This page was generated on 2023-10-14 21:30:02 -0400 (Sat, 14 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4626
palomino3Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4379
merida1macOS 12.6.4 Montereyx86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4395
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 12/31HostnameOS / ArchCHECK
biodbNcbi 1.4.0  (landing page)
Pierrick Roger
Snapshot Date: 2023-10-14 09:55:02 -0400 (Sat, 14 Oct 2023)
git_url: https://git.bioconductor.org/packages/biodbNcbi
git_branch: RELEASE_3_17
git_last_commit: a5fe16a
git_last_commit_date: 2023-04-25 11:36:48 -0400 (Tue, 25 Apr 2023)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  ERROR  
palomino3Windows Server 2022 Datacenter / x64  WARNINGS  
merida1macOS 12.6.4 Monterey / x86_64  WARNINGS  

CHECK results for biodbNcbi on palomino3


To the developers/maintainers of the biodbNcbi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: biodbNcbi
Version: 1.4.0
Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.4.0.tar.gz
StartedAt: 2023-10-14 11:08:23 -0400 (Sat, 14 Oct 2023)
EndedAt: 2023-10-14 11:10:54 -0400 (Sat, 14 Oct 2023)
EllapsedTime: 151.4 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbNcbi.Rcheck
Warnings: 1

Tests output

biodbNcbi.Rcheck/tests/testthat.Rout


R version 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbNci)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbNcbi")
Loading required package: biodbNcbi
biodb.INFO [2023-10-14 11:09:13.867][biodb::testContext]
biodb.INFO [2023-10-14 11:09:13.871][biodb::testContext] ********************************************************************************
biodb.INFO [2023-10-14 11:09:13.872][biodb::testContext] Test context - CCDS long tests
biodb.INFO [2023-10-14 11:09:13.874][biodb::testContext] ********************************************************************************
biodb.INFO [2023-10-14 11:09:13.875][biodb::testContext]
biodb.INFO [2023-10-14 11:09:13.884][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.8.1.
biodb.DEBUG[2023-10-14 11:09:13.887][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.17-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2023-10-14 11:09:13.897][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-10-14 11:09:13.899][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2023-10-14 11:09:13.901][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2023-10-14 11:09:13.902][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:13.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:13.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:13.907][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2023-10-14 11:09:13.955][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2023-10-14 11:09:13.957][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:13.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:13.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:13.961][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2023-10-14 11:09:13.963][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2023-10-14 11:09:13.964][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:13.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:13.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:13.968][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2023-10-14 11:09:13.969][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2023-10-14 11:09:13.971][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2023-10-14 11:09:13.972][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:13.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:13.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:13.976][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2023-10-14 11:09:13.977][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2023-10-14 11:09:13.978][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2023-10-14 11:09:13.980][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:13.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:13.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:13.983][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2023-10-14 11:09:13.985][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2023-10-14 11:09:13.986][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:13.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:13.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:13.990][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2023-10-14 11:09:13.991][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2023-10-14 11:09:13.993][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2023-10-14 11:09:13.994][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:13.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:13.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:13.997][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2023-10-14 11:09:13.999][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2023-10-14 11:09:14.000][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.004][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2023-10-14 11:09:14.005][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2023-10-14 11:09:14.007][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2023-10-14 11:09:14.008][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.012][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2023-10-14 11:09:14.013][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2023-10-14 11:09:14.014][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2023-10-14 11:09:14.016][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2023-10-14 11:09:14.017][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2023-10-14 11:09:14.019][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2023-10-14 11:09:14.020][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.024][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2023-10-14 11:09:14.025][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2023-10-14 11:09:14.026][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.030][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2023-10-14 11:09:14.031][self$set] Set key entries.sep to "|".
biodb.DEBUG[2023-10-14 11:09:14.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.037][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2023-10-14 11:09:14.038][self$set] Set key offline to FALSE.
biodb.DEBUG[2023-10-14 11:09:14.039][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.043][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2023-10-14 11:09:14.045][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2023-10-14 11:09:14.046][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.052][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2023-10-14 11:09:14.055][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2023-10-14 11:09:14.057][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.059][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.062][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2023-10-14 11:09:14.064][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2023-10-14 11:09:14.070][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2023-10-14 11:09:14.071][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.075][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2023-10-14 11:09:14.076][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2023-10-14 11:09:14.078][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2023-10-14 11:09:14.079][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.086][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2023-10-14 11:09:14.118][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:14.134][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2023-10-14 11:09:14.136][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.137][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-10-14 11:09:14.138][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.140][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-10-14 11:09:14.141][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:14.143][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-10-14 11:09:14.144][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-10-14 11:09:14.145][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-10-14 11:09:14.147][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.148][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2023-10-14 11:09:14.149][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-10-14 11:09:14.150][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:14.151][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.153][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-10-14 11:09:14.153][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-10-14 11:09:14.153][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-10-14 11:09:14.153][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-10-14 11:09:14.153][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-10-14 11:09:14.154][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-10-14 11:09:14.155][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:14.156][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:14.157][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-10-14 11:09:14.159][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:14.160][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:14.161][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-10-14 11:09:14.162][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:14.163][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-10-14 11:09:14.165][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-10-14 11:09:14.166][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:14.167][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:14.168][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2023-10-14 11:09:14.171][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:14.172][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2023-10-14 11:09:14.173][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.174][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-10-14 11:09:14.176][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.177][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-10-14 11:09:14.178][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:14.179][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-10-14 11:09:14.181][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-10-14 11:09:14.182][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-10-14 11:09:14.183][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.184][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2023-10-14 11:09:14.186][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-10-14 11:09:14.187][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:14.188][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.195][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-10-14 11:09:14.195][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-10-14 11:09:14.195][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-10-14 11:09:14.195][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-10-14 11:09:14.195][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-10-14 11:09:14.197][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-10-14 11:09:14.198][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:14.199][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:14.201][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-10-14 11:09:14.202][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:14.203][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:14.204][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-10-14 11:09:14.205][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:14.207][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-10-14 11:09:14.208][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-10-14 11:09:14.209][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:14.210][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:14.212][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2023-10-14 11:09:14.214][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.215][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2023-10-14 11:09:14.216][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.217][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-10-14 11:09:14.218][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.220][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-10-14 11:09:14.221][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:14.222][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-10-14 11:09:14.223][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-10-14 11:09:14.225][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-10-14 11:09:14.226][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:14.227][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2023-10-14 11:09:14.228][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-10-14 11:09:14.229][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:14.231][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.232][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:14.233][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-10-14 11:09:14.234][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:14.236][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:14.237][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-10-14 11:09:14.238][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:14.239][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:14.240][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-10-14 11:09:14.242][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:14.243][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-10-14 11:09:14.244][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-10-14 11:09:14.246][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:14.247][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:14.248][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2023-10-14 11:09:14.251][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.252][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2023-10-14 11:09:14.253][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.254][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-10-14 11:09:14.256][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.257][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-10-14 11:09:14.258][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:14.259][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-10-14 11:09:14.261][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-10-14 11:09:14.262][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-10-14 11:09:14.263][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:14.265][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2023-10-14 11:09:14.266][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-10-14 11:09:14.267][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:14.269][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.271][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:14.272][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-10-14 11:09:14.273][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:14.274][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:14.276][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-10-14 11:09:14.277][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:14.278][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:14.279][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-10-14 11:09:14.280][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:14.282][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-10-14 11:09:14.283][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-10-14 11:09:14.284][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:14.285][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:14.289][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-10-14 11:09:14.290][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.293][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:14.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:14.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.298][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:14.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:14.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.309][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:14.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:14.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.315][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:14.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:14.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.321][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:14.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:14.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.326][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:14.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:14.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.332][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:14.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:14.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.338][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:14.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:14.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.343][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:14.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:14.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.348][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:14.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:14.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.356][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:14.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:14.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.363][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:14.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:14.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.369][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:14.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:14.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.376][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:14.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:14.380][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.382][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:14.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:14.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:14.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:14.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.393][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:14.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:14.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.398][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2023-10-14 11:09:14.402][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2023-10-14 11:09:14.404][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2023-10-14 11:09:14.406][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2023-10-14 11:09:14.407][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-10-14 11:09:14.409][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2023-10-14 11:09:14.410][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2023-10-14 11:09:14.412][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2023-10-14 11:09:14.413][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2023-10-14 11:09:14.415][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2023-10-14 11:09:14.417][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-10-14 11:09:14.418][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2023-10-14 11:09:14.420][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2023-10-14 11:09:14.422][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2023-10-14 11:09:14.424][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-10-14 11:09:14.426][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-10-14 11:09:14.427][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2023-10-14 11:09:14.429][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2023-10-14 11:09:14.431][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-10-14 11:09:14.433][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2023-10-14 11:09:14.435][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2023-10-14 11:09:14.437][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2023-10-14 11:09:14.443][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2023-10-14 11:09:14.445][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2023-10-14 11:09:14.446][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2023-10-14 11:09:14.448][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2023-10-14 11:09:14.449][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2023-10-14 11:09:14.451][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2023-10-14 11:09:14.452][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2023-10-14 11:09:14.454][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2023-10-14 11:09:14.455][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2023-10-14 11:09:14.457][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2023-10-14 11:09:14.458][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2023-10-14 11:09:14.460][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2023-10-14 11:09:14.461][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2023-10-14 11:09:14.463][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2023-10-14 11:09:14.464][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2023-10-14 11:09:14.466][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2023-10-14 11:09:14.468][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2023-10-14 11:09:14.470][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2023-10-14 11:09:14.473][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2023-10-14 11:09:14.476][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2023-10-14 11:09:14.479][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2023-10-14 11:09:14.480][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2023-10-14 11:09:14.482][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2023-10-14 11:09:14.484][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-10-14 11:09:14.485][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2023-10-14 11:09:14.487][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2023-10-14 11:09:14.488][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2023-10-14 11:09:14.490][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2023-10-14 11:09:14.491][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2023-10-14 11:09:14.493][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2023-10-14 11:09:14.495][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2023-10-14 11:09:14.496][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2023-10-14 11:09:14.498][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2023-10-14 11:09:14.499][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2023-10-14 11:09:14.501][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2023-10-14 11:09:14.502][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2023-10-14 11:09:14.504][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2023-10-14 11:09:14.506][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2023-10-14 11:09:14.507][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2023-10-14 11:09:14.509][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2023-10-14 11:09:14.511][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2023-10-14 11:09:14.513][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2023-10-14 11:09:14.514][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2023-10-14 11:09:14.517][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2023-10-14 11:09:14.519][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-10-14 11:09:14.521][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-10-14 11:09:14.523][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2023-10-14 11:09:14.525][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2023-10-14 11:09:14.527][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2023-10-14 11:09:14.528][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2023-10-14 11:09:14.530][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2023-10-14 11:09:14.531][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2023-10-14 11:09:14.533][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2023-10-14 11:09:14.534][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2023-10-14 11:09:14.536][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2023-10-14 11:09:14.537][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2023-10-14 11:09:14.540][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2023-10-14 11:09:14.542][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2023-10-14 11:09:14.543][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2023-10-14 11:09:14.545][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2023-10-14 11:09:14.546][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2023-10-14 11:09:14.584][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2023-10-14 11:09:14.587][initialize] This is biodb version 1.8.1.
biodb.DEBUG[2023-10-14 11:09:14.590][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-10-14 11:09:14.591][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:14.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:14.594][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.600][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:14.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:14.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:14.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:14.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.608][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:14.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:14.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:14.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:14.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.616][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:14.619][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:14.620][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:14.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:14.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.624][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:14.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:14.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:14.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:14.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.632][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:14.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:14.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:14.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:14.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.640][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:14.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:14.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:14.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:14.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.648][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:14.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:14.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:14.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:14.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.660][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:14.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:14.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:14.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:14.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.672][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:14.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:14.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:14.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:14.678][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.680][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:14.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:14.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:14.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:14.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.688][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:14.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:14.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:14.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:14.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.695][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:14.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:14.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:14.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:14.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.708][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:14.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:14.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:14.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:14.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.716][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:14.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:14.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:14.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:14.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.724][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:14.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:14.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:14.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:14.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.732][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:14.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:14.735][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:14.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:14.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.740][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:14.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:14.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:14.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:14.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:14.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:14.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:14.749][bdb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.17-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2023-10-14 11:09:14.760][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2023-10-14 11:09:14.762][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.764][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2023-10-14 11:09:14.765][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.767][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-10-14 11:09:14.768][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.769][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-10-14 11:09:14.771][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.772][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-10-14 11:09:14.773][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2023-10-14 11:09:14.774][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-10-14 11:09:14.775][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.777][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2023-10-14 11:09:14.778][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-10-14 11:09:14.779][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2023-10-14 11:09:14.779][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2023-10-14 11:09:14.780][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:14.781][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:14.783][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-10-14 11:09:14.784][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:14.785][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:14.786][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-10-14 11:09:14.787][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:14.788][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:14.790][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-10-14 11:09:14.791][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2023-10-14 11:09:14.791][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2023-10-14 11:09:14.792][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-10-14 11:09:14.793][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-10-14 11:09:14.794][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.795][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:14.797][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2023-10-14 11:09:14.799][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.800][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2023-10-14 11:09:14.801][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.802][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-10-14 11:09:14.804][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.805][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-10-14 11:09:14.806][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.807][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-10-14 11:09:14.808][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-10-14 11:09:14.810][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-10-14 11:09:14.811][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.812][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2023-10-14 11:09:14.814][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-10-14 11:09:14.815][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2023-10-14 11:09:14.815][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2023-10-14 11:09:14.815][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2023-10-14 11:09:14.815][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2023-10-14 11:09:14.815][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2023-10-14 11:09:14.815][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2023-10-14 11:09:14.816][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:14.818][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-10-14 11:09:14.819][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-10-14 11:09:14.820][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:14.821][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:14.822][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-10-14 11:09:14.824][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:14.825][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:14.826][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-10-14 11:09:14.827][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-10-14 11:09:14.827][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2023-10-14 11:09:14.828][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-10-14 11:09:14.829][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-10-14 11:09:14.831][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.832][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:14.833][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2023-10-14 11:09:14.835][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:14.836][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2023-10-14 11:09:14.837][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.839][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-10-14 11:09:14.840][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.841][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-10-14 11:09:14.842][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.843][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-10-14 11:09:14.845][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-10-14 11:09:14.846][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-10-14 11:09:14.847][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.848][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2023-10-14 11:09:14.849][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-10-14 11:09:14.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2023-10-14 11:09:14.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:09:14.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:09:14.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:09:14.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:09:14.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:09:14.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:09:14.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:09:14.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:09:14.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:09:14.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2023-10-14 11:09:14.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:09:14.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:09:14.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:09:14.852][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:14.853][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-10-14 11:09:14.853][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-10-14 11:09:14.853][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-10-14 11:09:14.855][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2023-10-14 11:09:14.856][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:14.857][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:14.858][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-10-14 11:09:14.859][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:14.861][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:14.862][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-10-14 11:09:14.863][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-10-14 11:09:14.863][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2023-10-14 11:09:14.863][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2023-10-14 11:09:14.865][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-10-14 11:09:14.866][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-10-14 11:09:14.867][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.868][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2023-10-14 11:09:14.869][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2023-10-14 11:09:14.872][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.873][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2023-10-14 11:09:14.874][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.875][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-10-14 11:09:14.876][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.877][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-10-14 11:09:14.878][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.880][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-10-14 11:09:14.881][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-10-14 11:09:14.882][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-10-14 11:09:14.883][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.884][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2023-10-14 11:09:14.886][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-10-14 11:09:14.887][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2023-10-14 11:09:14.887][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2023-10-14 11:09:14.888][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:14.889][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:14.890][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2023-10-14 11:09:14.891][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:14.893][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:14.894][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-10-14 11:09:14.895][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:14.896][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:14.897][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-10-14 11:09:14.898][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-10-14 11:09:14.898][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2023-10-14 11:09:14.898][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2023-10-14 11:09:14.899][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-10-14 11:09:14.900][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-10-14 11:09:14.901][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:14.903][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2023-10-14 11:09:14.911][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2023-10-14 11:09:14.913][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-10-14 11:09:14.915][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-10-14 11:09:14.919][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2023-10-14 11:09:14.921][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-10-14 11:09:14.922][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2023-10-14 11:09:14.951][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2023-10-14 11:09:14.953][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2023-10-14 11:09:14.957][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2023-10-14 11:09:14.961][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2023-10-14 11:09:14.965][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-10-14 11:09:14.967][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-10-14 11:09:14.968][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2023-10-14 11:09:14.970][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-10-14 11:09:14.971][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-10-14 11:09:14.972][bdb$getFactory()$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.INFO [2023-10-14 11:09:14.983][biodb::testThat]
biodb.INFO [2023-10-14 11:09:14.984][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2023-10-14 11:09:14.985][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:09:14.986][biodb::testThat]
biodb.TRACE[2023-10-14 11:09:14.993][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.17-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS12227.1-content.html".
biodb.DEBUG[2023-10-14 11:09:14.995][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:09:14.998][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2023-10-14 11:09:15.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:09:15.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:15.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:15.026][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:15.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:15.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:15.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:09:15.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.063][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:15.075][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:15.076][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.078][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.104][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:15.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:15.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.110][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:15.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:15.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.116][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:15.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:15.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:15.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:15.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:15.235][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS12227.1.
biodb.TRACE[2023-10-14 11:09:15.239][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:15.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:15.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.244][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:15.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:15.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.269][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:09:15.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:09:15.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.275][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:09:15.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:09:15.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.280][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-10-14 11:09:15.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-10-14 11:09:15.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.285][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-10-14 11:09:15.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-10-14 11:09:15.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.336][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:15.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:15.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.387][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:15.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:15.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.392][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:15.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:15.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.397][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:15.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:15.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.433][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.434][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.435][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.436][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.454][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:15.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:15.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.460][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:15.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:15.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.465][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:15.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:15.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.470][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:15.471][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:15.472][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.473][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.475][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:15.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:15.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.490][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:15.491][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:15.493][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.494][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.501][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.503][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.504][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.505][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.526][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.17-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS43240.1-content.html".
biodb.DEBUG[2023-10-14 11:09:15.563][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:09:15.565][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2023-10-14 11:09:15.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:09:15.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:15.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:15.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:15.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:15.579][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:15.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:09:15.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.610][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:15.611][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:15.613][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.614][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.616][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:15.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:15.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.621][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:15.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:15.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.626][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:15.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:15.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.636][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:15.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:15.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:15.673][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS43240.1.
biodb.TRACE[2023-10-14 11:09:15.697][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:15.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:15.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.703][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:15.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:15.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.708][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:09:15.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:09:15.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.714][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:09:15.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:09:15.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.719][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-10-14 11:09:15.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-10-14 11:09:15.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.724][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-10-14 11:09:15.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-10-14 11:09:15.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.742][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:15.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:15.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.789][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:15.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:15.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.795][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:15.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:15.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.802][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:15.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:15.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.850][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.851][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.852][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.853][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.870][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:15.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:15.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.876][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:15.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:15.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.881][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:15.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:15.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.886][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:15.887][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:15.889][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.895][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.896][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:15.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:15.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.912][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:15.914][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:15.915][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.916][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:15.924][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:15.926][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:15.927][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:15.928][ef$get] fields variable is a list.
biodb.INFO [2023-10-14 11:09:15.944][biodb::testThat]
biodb.INFO [2023-10-14 11:09:15.945][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2023-10-14 11:09:15.947][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:09:15.948][biodb::testThat]
biodb.DEBUG[2023-10-14 11:09:15.951][private$loadEntries] Creating entries from ids [2]: "CCDS12227.1, CCDS43240.1".
biodb.DEBUG[2023-10-14 11:09:15.958][conn$getEntryContent] Get NCBI CCDS entry content(s) for 2 id(s)...
biodb.TRACE[2023-10-14 11:09:15.965][cch$loadFileContent] Trying to load 2 files from cache: [2]: "CCDS12227.1, CCDS43240.1".
biodb.INFO [2023-10-14 11:09:15.966][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704" for "ncbi.ccds-c3bf0257a03be04fd46e362b99907704".
biodb.TRACE[2023-10-14 11:09:15.968][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2023-10-14 11:09:15.970][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:09:15.971][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:09:15.973][conn$getEntryContent] 2 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2023-10-14 11:09:15.974][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:09:15.975][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:09:15.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:09:15.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:15.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:15.992][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:15.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:15.995][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:15.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:15.998][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2023-10-14 11:09:16.016][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:09:16.017][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:09:16.019][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.TRACE[2023-10-14 11:09:17.599][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1).
biodb.DEBUG[2023-10-14 11:09:18.756][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:09:18.759][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/91a3a15871253de20fe3aa9cc158f120.content"
biodb.TRACE[2023-10-14 11:09:18.774][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/91a3a15871253de20fe3aa9cc158f120.request"
biodb.DEBUG[2023-10-14 11:09:18.855][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:09:18.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:18.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:18.866][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:18.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:18.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:18.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:18.896][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1".
biodb.DEBUG[2023-10-14 11:09:18.912][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:09:18.914][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:09:18.928][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1".
biodb.TRACE[2023-10-14 11:09:20.066][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1).
biodb.DEBUG[2023-10-14 11:09:21.180][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:09:21.184][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/a052eb5467fd4c16ef9a5120d12cce8e.content"
biodb.TRACE[2023-10-14 11:09:21.193][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/a052eb5467fd4c16ef9a5120d12cce8e.request"
biodb.TRACE[2023-10-14 11:09:21.198][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS12227.1.html, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html"
biodb.DEBUG[2023-10-14 11:09:21.203][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:09:21.205][self$createEntryFromContent] Creating NCBI CCDS entries from 2 content(s).
biodb.DEBUG[2023-10-14 11:09:21.207][self$createEntryFromContent] Parsing 2 NCBI CCDS entries.
biodb.DEBUG[2023-10-14 11:09:21.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:09:21.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:21.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:21.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:21.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:21.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:21.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:09:21.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:21.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:21.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.247][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:21.248][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:21.250][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.251][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.253][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:21.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:21.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.258][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:21.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:21.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.264][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:21.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:21.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:21.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:21.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.274][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:21.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:21.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:21.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:21.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:21.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:21.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:21.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:21.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:21.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:09:21.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:21.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:21.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:21.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:21.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:21.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:09:21.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:21.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:21.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.334][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:21.335][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:21.336][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.338][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.339][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:21.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:21.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.345][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:21.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:21.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.350][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:21.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:21.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:21.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:21.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.361][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:21.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:21.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:21.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:21.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:21.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:21.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:21.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:21.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:21.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:21.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:21.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:21.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:21.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:21.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:21.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:21.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:21.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:21.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:21.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:21.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:21.415][self$createEntryFromContent] Accession numbers: CCDS12227.1, CCDS43240.1.
biodb.TRACE[2023-10-14 11:09:21.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-10-14 11:09:21.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-10-14 11:09:21.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-10-14 11:09:21.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-10-14 11:09:21.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-10-14 11:09:21.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-10-14 11:09:21.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-10-14 11:09:21.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-10-14 11:09:21.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-10-14 11:09:21.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-10-14 11:09:21.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-10-14 11:09:21.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-10-14 11:09:21.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-10-14 11:09:21.475][biodb::testThat]
biodb.INFO [2023-10-14 11:09:21.476][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2023-10-14 11:09:21.477][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:09:21.479][biodb::testThat]
biodb.INFO [2023-10-14 11:09:21.489][biodb::testThat]
biodb.INFO [2023-10-14 11:09:21.490][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2023-10-14 11:09:21.491][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:09:21.493][biodb::testThat]
biodb.WARN [2023-10-14 11:09:21.516][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2023-10-14 11:09:21.537][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2023-10-14 11:09:21.552][biodb::testThat]
biodb.INFO [2023-10-14 11:09:21.553][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2023-10-14 11:09:21.555][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:09:21.556][biodb::testThat]
biodb.TRACE[2023-10-14 11:09:21.588][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:21.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:21.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.593][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:21.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:21.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.599][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:09:21.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:09:21.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.604][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:09:21.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:09:21.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.609][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-10-14 11:09:21.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-10-14 11:09:21.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.614][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-10-14 11:09:21.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-10-14 11:09:21.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.628][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:21.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:21.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.633][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:21.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:21.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.638][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:09:21.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:09:21.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.643][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:09:21.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:09:21.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.648][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-10-14 11:09:21.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-10-14 11:09:21.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:21.653][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-10-14 11:09:21.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-10-14 11:09:21.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:21.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-10-14 11:09:21.667][biodb::testThat]
biodb.INFO [2023-10-14 11:09:21.668][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2023-10-14 11:09:21.670][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:09:21.671][biodb::testThat]
biodb.INFO [2023-10-14 11:09:21.683][biodb::testThat]
biodb.INFO [2023-10-14 11:09:21.684][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2023-10-14 11:09:21.686][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:09:21.687][biodb::testThat]
biodb.INFO [2023-10-14 11:09:21.698][biodb::testThat]
biodb.INFO [2023-10-14 11:09:21.699][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2023-10-14 11:09:21.700][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:09:21.701][biodb::testThat]
biodb.DEBUG[2023-10-14 11:09:21.711][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2023-10-14 11:09:22.843][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1.
biodb.INFO [2023-10-14 11:09:24.234][biodb::testThat]
biodb.INFO [2023-10-14 11:09:24.235][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2023-10-14 11:09:24.237][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:09:24.238][biodb::testThat]
biodb.INFO [2023-10-14 11:09:24.248][bdb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2023-10-14 11:09:24.250][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2023-10-14 11:09:24.252][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2023-10-14 11:09:24.253][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2023-10-14 11:09:24.254][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:24.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:24.256][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:24.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:24.259][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2023-10-14 11:09:24.271][biodb::testContext]
biodb.INFO [2023-10-14 11:09:24.272][biodb::testContext] ********************************************************************************
biodb.INFO [2023-10-14 11:09:24.274][biodb::testContext] Test context - Gene long tests
biodb.INFO [2023-10-14 11:09:24.275][biodb::testContext] ********************************************************************************
biodb.INFO [2023-10-14 11:09:24.276][biodb::testContext]
biodb.INFO [2023-10-14 11:09:24.279][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.8.1.
biodb.DEBUG[2023-10-14 11:09:24.281][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.17-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2023-10-14 11:09:24.287][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-10-14 11:09:24.289][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2023-10-14 11:09:24.290][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2023-10-14 11:09:24.291][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.295][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2023-10-14 11:09:24.312][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2023-10-14 11:09:24.314][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.319][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2023-10-14 11:09:24.320][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2023-10-14 11:09:24.321][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.325][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2023-10-14 11:09:24.326][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2023-10-14 11:09:24.328][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2023-10-14 11:09:24.329][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.333][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2023-10-14 11:09:24.335][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2023-10-14 11:09:24.336][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2023-10-14 11:09:24.338][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.342][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2023-10-14 11:09:24.344][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2023-10-14 11:09:24.353][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.359][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2023-10-14 11:09:24.361][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2023-10-14 11:09:24.363][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2023-10-14 11:09:24.364][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.369][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2023-10-14 11:09:24.371][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2023-10-14 11:09:24.372][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.378][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2023-10-14 11:09:24.379][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2023-10-14 11:09:24.381][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2023-10-14 11:09:24.383][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.387][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2023-10-14 11:09:24.388][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2023-10-14 11:09:24.389][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2023-10-14 11:09:24.390][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2023-10-14 11:09:24.392][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2023-10-14 11:09:24.393][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2023-10-14 11:09:24.394][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.398][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2023-10-14 11:09:24.399][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2023-10-14 11:09:24.400][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.404][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2023-10-14 11:09:24.406][self$set] Set key entries.sep to "|".
biodb.DEBUG[2023-10-14 11:09:24.407][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.411][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2023-10-14 11:09:24.413][self$set] Set key offline to FALSE.
biodb.DEBUG[2023-10-14 11:09:24.414][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.418][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2023-10-14 11:09:24.419][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2023-10-14 11:09:24.420][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.424][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2023-10-14 11:09:24.425][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2023-10-14 11:09:24.426][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.431][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2023-10-14 11:09:24.432][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2023-10-14 11:09:24.436][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2023-10-14 11:09:24.438][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.441][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2023-10-14 11:09:24.443][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2023-10-14 11:09:24.444][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2023-10-14 11:09:24.445][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.449][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2023-10-14 11:09:24.451][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:24.466][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2023-10-14 11:09:24.467][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:24.468][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-10-14 11:09:24.470][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:24.471][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-10-14 11:09:24.472][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:24.474][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-10-14 11:09:24.475][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-10-14 11:09:24.476][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-10-14 11:09:24.477][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:24.479][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2023-10-14 11:09:24.480][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-10-14 11:09:24.481][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:24.482][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:24.483][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-10-14 11:09:24.483][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-10-14 11:09:24.483][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-10-14 11:09:24.483][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-10-14 11:09:24.483][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-10-14 11:09:24.485][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-10-14 11:09:24.486][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:24.487][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:24.488][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-10-14 11:09:24.490][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:24.491][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:24.492][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-10-14 11:09:24.493][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:24.499][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-10-14 11:09:24.500][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-10-14 11:09:24.502][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:24.503][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:24.505][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2023-10-14 11:09:24.507][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:24.508][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2023-10-14 11:09:24.509][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:24.511][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-10-14 11:09:24.512][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:24.513][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-10-14 11:09:24.514][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:24.516][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-10-14 11:09:24.517][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-10-14 11:09:24.518][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-10-14 11:09:24.520][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:24.521][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2023-10-14 11:09:24.523][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-10-14 11:09:24.524][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:24.526][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:24.527][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-10-14 11:09:24.527][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-10-14 11:09:24.527][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-10-14 11:09:24.527][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-10-14 11:09:24.527][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-10-14 11:09:24.528][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-10-14 11:09:24.530][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:24.531][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:24.533][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-10-14 11:09:24.534][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:24.536][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:24.539][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-10-14 11:09:24.541][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:24.542][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-10-14 11:09:24.544][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-10-14 11:09:24.545][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:24.547][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:24.549][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2023-10-14 11:09:24.552][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:24.553][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2023-10-14 11:09:24.555][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:24.557][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-10-14 11:09:24.558][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:24.559][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-10-14 11:09:24.560][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:24.562][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-10-14 11:09:24.563][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-10-14 11:09:24.564][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-10-14 11:09:24.565][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:24.567][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2023-10-14 11:09:24.568][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-10-14 11:09:24.569][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:24.571][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:24.572][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:24.573][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-10-14 11:09:24.575][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:24.576][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:24.577][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-10-14 11:09:24.578][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:24.580][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:24.581][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-10-14 11:09:24.582][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:24.583][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-10-14 11:09:24.585][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-10-14 11:09:24.586][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:24.587][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:24.588][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2023-10-14 11:09:24.590][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:24.592][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2023-10-14 11:09:24.593][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:24.594][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-10-14 11:09:24.596][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:24.597][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-10-14 11:09:24.598][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:24.600][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-10-14 11:09:24.602][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-10-14 11:09:24.603][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-10-14 11:09:24.605][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:24.606][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2023-10-14 11:09:24.607][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-10-14 11:09:24.608][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:24.610][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:24.611][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:24.612][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-10-14 11:09:24.613][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:24.614][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:24.616][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-10-14 11:09:24.617][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:24.618][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:24.619][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-10-14 11:09:24.621][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:24.622][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-10-14 11:09:24.623][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-10-14 11:09:24.624][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:24.625][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:24.627][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-10-14 11:09:24.628][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.631][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:24.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:24.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.637][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:24.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:24.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.643][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:24.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:24.651][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:24.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:24.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.660][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:24.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:24.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.666][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.667][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:24.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:24.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.672][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:24.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:24.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.678][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:24.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:24.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.684][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:24.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:24.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.690][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:24.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:24.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.696][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:24.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:24.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.701][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:24.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:24.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.707][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:24.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:24.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.713][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:24.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:24.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.719][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:24.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:24.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.725][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:24.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:24.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.737][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:24.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:24.740][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.743][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2023-10-14 11:09:24.745][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2023-10-14 11:09:24.746][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2023-10-14 11:09:24.748][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2023-10-14 11:09:24.750][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-10-14 11:09:24.751][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2023-10-14 11:09:24.753][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2023-10-14 11:09:24.755][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2023-10-14 11:09:24.756][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2023-10-14 11:09:24.758][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2023-10-14 11:09:24.760][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-10-14 11:09:24.761][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2023-10-14 11:09:24.763][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2023-10-14 11:09:24.764][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2023-10-14 11:09:24.766][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-10-14 11:09:24.768][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-10-14 11:09:24.770][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2023-10-14 11:09:24.771][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2023-10-14 11:09:24.773][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-10-14 11:09:24.775][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2023-10-14 11:09:24.777][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2023-10-14 11:09:24.778][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2023-10-14 11:09:24.780][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2023-10-14 11:09:24.782][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2023-10-14 11:09:24.783][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2023-10-14 11:09:24.785][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2023-10-14 11:09:24.786][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2023-10-14 11:09:24.788][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2023-10-14 11:09:24.790][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2023-10-14 11:09:24.797][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2023-10-14 11:09:24.800][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2023-10-14 11:09:24.802][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2023-10-14 11:09:24.804][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2023-10-14 11:09:24.805][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2023-10-14 11:09:24.807][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2023-10-14 11:09:24.809][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2023-10-14 11:09:24.810][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2023-10-14 11:09:24.812][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2023-10-14 11:09:24.814][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2023-10-14 11:09:24.815][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2023-10-14 11:09:24.817][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2023-10-14 11:09:24.818][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2023-10-14 11:09:24.820][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2023-10-14 11:09:24.822][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2023-10-14 11:09:24.823][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2023-10-14 11:09:24.825][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-10-14 11:09:24.826][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2023-10-14 11:09:24.828][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2023-10-14 11:09:24.830][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2023-10-14 11:09:24.831][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2023-10-14 11:09:24.833][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2023-10-14 11:09:24.835][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2023-10-14 11:09:24.836][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2023-10-14 11:09:24.838][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2023-10-14 11:09:24.840][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2023-10-14 11:09:24.841][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2023-10-14 11:09:24.843][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2023-10-14 11:09:24.844][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2023-10-14 11:09:24.846][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2023-10-14 11:09:24.848][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2023-10-14 11:09:24.849][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2023-10-14 11:09:24.851][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2023-10-14 11:09:24.853][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2023-10-14 11:09:24.854][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2023-10-14 11:09:24.856][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2023-10-14 11:09:24.858][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2023-10-14 11:09:24.859][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-10-14 11:09:24.861][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-10-14 11:09:24.862][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2023-10-14 11:09:24.864][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2023-10-14 11:09:24.866][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2023-10-14 11:09:24.867][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2023-10-14 11:09:24.869][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2023-10-14 11:09:24.870][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2023-10-14 11:09:24.872][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2023-10-14 11:09:24.874][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2023-10-14 11:09:24.875][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2023-10-14 11:09:24.877][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2023-10-14 11:09:24.878][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2023-10-14 11:09:24.880][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2023-10-14 11:09:24.882][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2023-10-14 11:09:24.883][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2023-10-14 11:09:24.885][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2023-10-14 11:09:24.887][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2023-10-14 11:09:24.889][initialize] This is biodb version 1.8.1.
biodb.DEBUG[2023-10-14 11:09:24.890][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-10-14 11:09:24.891][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:24.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:24.894][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.896][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:24.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:24.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:24.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:24.902][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:24.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:24.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:24.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:24.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.914][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:24.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:24.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:24.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:24.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.922][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:24.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:24.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:24.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:24.933][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.935][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:24.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:24.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:24.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:24.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.943][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:24.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:24.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:24.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:24.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.952][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:24.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:24.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:24.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:24.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.960][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:24.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:24.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:24.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:24.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.968][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:24.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:24.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:24.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:24.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.975][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:24.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:24.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:24.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:24.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.983][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:24.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:24.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:24.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:24.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:24.991][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:24.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:24.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:24.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:24.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:24.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:24.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:25.001][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:25.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:25.005][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:25.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:25.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:25.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:25.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:25.014][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:25.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:25.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:25.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:25.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:25.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:25.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:25.028][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:25.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:25.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:25.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:25.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:25.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:25.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:25.041][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:25.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:25.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:25.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:25.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:25.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:25.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:25.051][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:25.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:25.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:25.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:25.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:25.057][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:25.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:25.063][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.17-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2023-10-14 11:09:25.066][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2023-10-14 11:09:25.068][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:25.069][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2023-10-14 11:09:25.071][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:25.072][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-10-14 11:09:25.073][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:25.075][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-10-14 11:09:25.077][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:25.080][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-10-14 11:09:25.082][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2023-10-14 11:09:25.083][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-10-14 11:09:25.085][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:25.086][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2023-10-14 11:09:25.087][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-10-14 11:09:25.089][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2023-10-14 11:09:25.089][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2023-10-14 11:09:25.090][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:25.096][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:25.098][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-10-14 11:09:25.099][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:25.100][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:25.101][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-10-14 11:09:25.103][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:25.104][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:25.105][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-10-14 11:09:25.107][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2023-10-14 11:09:25.107][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2023-10-14 11:09:25.108][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-10-14 11:09:25.109][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-10-14 11:09:25.110][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:25.112][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:25.113][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2023-10-14 11:09:25.116][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:25.117][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2023-10-14 11:09:25.118][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:25.119][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-10-14 11:09:25.121][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:25.122][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-10-14 11:09:25.123][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:25.124][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-10-14 11:09:25.126][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-10-14 11:09:25.127][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-10-14 11:09:25.128][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:25.130][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2023-10-14 11:09:25.131][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-10-14 11:09:25.132][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2023-10-14 11:09:25.132][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2023-10-14 11:09:25.132][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2023-10-14 11:09:25.132][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2023-10-14 11:09:25.132][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2023-10-14 11:09:25.132][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2023-10-14 11:09:25.134][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:25.135][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-10-14 11:09:25.136][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-10-14 11:09:25.137][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:25.139][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:25.140][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-10-14 11:09:25.141][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:25.142][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:25.143][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-10-14 11:09:25.145][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-10-14 11:09:25.145][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2023-10-14 11:09:25.146][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-10-14 11:09:25.147][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-10-14 11:09:25.148][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:25.150][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:25.151][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2023-10-14 11:09:25.153][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:25.155][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2023-10-14 11:09:25.156][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:25.158][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-10-14 11:09:25.159][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:25.160][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-10-14 11:09:25.161][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:25.162][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-10-14 11:09:25.164][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-10-14 11:09:25.165][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-10-14 11:09:25.166][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:25.167][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2023-10-14 11:09:25.169][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-10-14 11:09:25.171][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2023-10-14 11:09:25.171][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:09:25.171][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:09:25.171][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:09:25.171][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:09:25.171][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:09:25.171][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:09:25.171][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:09:25.171][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:09:25.171][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:09:25.171][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2023-10-14 11:09:25.171][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:09:25.171][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:09:25.171][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:09:25.173][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:25.175][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-10-14 11:09:25.175][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-10-14 11:09:25.175][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-10-14 11:09:25.177][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2023-10-14 11:09:25.178][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:25.180][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:25.181][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-10-14 11:09:25.182][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:25.183][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:25.185][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-10-14 11:09:25.186][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-10-14 11:09:25.186][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2023-10-14 11:09:25.186][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2023-10-14 11:09:25.187][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-10-14 11:09:25.188][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-10-14 11:09:25.189][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:25.191][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2023-10-14 11:09:25.192][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2023-10-14 11:09:25.194][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:25.196][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2023-10-14 11:09:25.197][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:25.198][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-10-14 11:09:25.199][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:25.201][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-10-14 11:09:25.202][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:25.203][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-10-14 11:09:25.205][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-10-14 11:09:25.206][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-10-14 11:09:25.207][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:25.208][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2023-10-14 11:09:25.210][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-10-14 11:09:25.211][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2023-10-14 11:09:25.211][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2023-10-14 11:09:25.212][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:25.213][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:25.215][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2023-10-14 11:09:25.216][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:25.217][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:25.218][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-10-14 11:09:25.219][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:25.220][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:25.221][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-10-14 11:09:25.223][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-10-14 11:09:25.223][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2023-10-14 11:09:25.223][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2023-10-14 11:09:25.224][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-10-14 11:09:25.225][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-10-14 11:09:25.226][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:25.227][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2023-10-14 11:09:25.229][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2023-10-14 11:09:25.231][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-10-14 11:09:25.237][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-10-14 11:09:25.240][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2023-10-14 11:09:25.241][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-10-14 11:09:25.243][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2023-10-14 11:09:25.252][super$initialize] Initialize connector ncbi.gene.
biodb.DEBUG[2023-10-14 11:09:25.253][super$initialize] Register connector ncbi.gene with the request scheduler
biodb.DEBUG[2023-10-14 11:09:25.255][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.gene.
biodb.DEBUG[2023-10-14 11:09:25.257][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2023-10-14 11:09:25.258][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-10-14 11:09:25.260][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-10-14 11:09:25.262][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2023-10-14 11:09:25.263][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-10-14 11:09:25.264][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-10-14 11:09:25.339][biodb$getFactory()$createConn] Creating new connector ncbi.gene for database class ncbi.gene .
biodb.INFO [2023-10-14 11:09:25.352][biodb::testThat]
biodb.INFO [2023-10-14 11:09:25.353][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2023-10-14 11:09:25.355][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:09:25.356][biodb::testThat]
biodb.TRACE[2023-10-14 11:09:25.369][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.17-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-2833-content.xml".
biodb.DEBUG[2023-10-14 11:09:25.371][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:09:25.375][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2023-10-14 11:09:25.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:09:25.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:25.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:25.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:25.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:25.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:25.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:09:25.404][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:25.405][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:25.407][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:25.408][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:25.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:25.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:25.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:25.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:25.417][ef$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:25.418][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:25.419][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:25.420][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:25.423][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:25.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:25.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:25.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:25.429][ef$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:25.430][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:25.431][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:25.432][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:25.435][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:25.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:25.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:25.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:25.441][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:25.442][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:25.443][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:25.445][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:25.447][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:25.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:25.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:25.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:25.452][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:25.454][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:25.455][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:25.456][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:25.459][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:25.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:25.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:25.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:25.464][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:25.465][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:25.466][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:25.467][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:25.471][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:25.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:25.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:25.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:25.483][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:25.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:25.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:25.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:25.488][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:25.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:25.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:25.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:25.493][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:25.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:25.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:25.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:25.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:25.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:25.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:25.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:25.503][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:25.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:25.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:25.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:25.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:25.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:25.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:25.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:25.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:25.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:25.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:25.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:25.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:25.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:25.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:25.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:25.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:25.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:25.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:25.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:25.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:25.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:25.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:25.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:25.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:25.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:25.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:25.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:25.547][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2833.
biodb.TRACE[2023-10-14 11:09:25.550][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:25.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:25.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:25.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:25.557][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:25.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:25.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:25.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:25.563][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:25.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:25.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:25.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:25.569][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:25.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:25.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:25.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:25.574][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:25.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:25.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:25.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:25.579][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2023-10-14 11:09:25.606][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2023-10-14 11:09:25.607][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2023-10-14 11:09:25.608][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2023-10-14 11:09:25.629][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2023-10-14 11:09:25.631][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-10-14 11:09:25.632][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2023-10-14 11:09:25.644][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-10-14 11:09:25.645][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-10-14 11:09:25.647][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2023-10-14 11:09:25.649][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-10-14 11:09:25.650][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2023-10-14 11:09:25.651][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-10-14 11:09:25.652][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-10-14 11:09:25.666][self$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.DEBUG[2023-10-14 11:09:25.668][private$loadEntries] Creating entries from ids [1]: "CCDS14416.1".
biodb.DEBUG[2023-10-14 11:09:25.670][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:09:25.674][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14416.1".
biodb.TRACE[2023-10-14 11:09:25.676][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:09:25.677][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:09:25.679][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:09:25.680][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2023-10-14 11:09:25.681][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:09:25.682][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:09:25.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:09:25.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:25.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:25.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:25.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:25.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:25.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:25.702][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1".
biodb.DEBUG[2023-10-14 11:09:25.705][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:09:25.706][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:09:25.708][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1".
biodb.TRACE[2023-10-14 11:09:27.014][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1).
biodb.DEBUG[2023-10-14 11:09:28.178][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:09:28.214][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/cb67b3a5b745c7932ff9adec9d1972cf.content"
biodb.TRACE[2023-10-14 11:09:28.224][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/cb67b3a5b745c7932ff9adec9d1972cf.request"
biodb.TRACE[2023-10-14 11:09:28.229][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14416.1.html"
biodb.DEBUG[2023-10-14 11:09:28.234][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:09:28.236][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:09:28.237][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2023-10-14 11:09:28.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:09:28.240][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:28.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:28.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:28.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:28.252][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:28.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:09:28.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:28.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:28.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.273][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:28.274][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:28.276][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.277][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.279][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:28.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:28.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.284][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:28.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:28.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.289][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:28.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:28.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:28.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:28.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.299][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:28.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:28.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:28.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:28.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:28.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:28.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:28.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:28.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:28.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:28.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:28.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:28.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:28.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:28.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:28.335][self$createEntryFromContent] Accession numbers: CCDS14416.1.
biodb.TRACE[2023-10-14 11:09:28.336][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:28.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:28.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.341][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:28.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:28.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.346][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:28.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:28.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.352][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:09:28.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:09:28.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.362][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:09:28.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:09:28.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.368][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-10-14 11:09:28.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-10-14 11:09:28.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.373][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-10-14 11:09:28.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-10-14 11:09:28.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:28.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:28.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.391][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:28.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:28.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:28.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:28.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:28.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:28.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:28.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:28.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:28.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:28.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:28.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:28.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:28.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:28.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.435][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:28.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:28.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.440][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:28.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:28.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:28.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:28.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:28.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:28.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:28.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:28.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:28.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:28.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.479][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:28.480][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:28.481][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.483][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:28.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:28.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.507][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:28.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:28.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.513][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:28.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:28.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.518][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:28.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:28.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.524][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:28.526][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:28.528][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.530][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.532][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:28.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:28.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.548][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:28.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:28.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.554][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:28.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:28.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.559][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:28.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:28.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.564][ef$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:28.566][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:28.567][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.569][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.570][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:28.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:28.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.587][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:28.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:28.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.593][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:28.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:28.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.598][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:28.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:28.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.603][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:28.604][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:28.606][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.607][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.608][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:28.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:28.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.631][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:28.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:28.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.637][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:28.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:28.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.642][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:28.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:28.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.647][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:28.649][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:28.650][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.651][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.652][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:28.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:28.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.668][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:28.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:28.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.674][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:28.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:28.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.679][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:28.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:28.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.685][ef$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:28.686][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:28.688][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.689][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.690][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:28.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:28.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.706][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:28.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:28.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.712][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:09:28.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:28.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.717][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:09:28.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:28.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.722][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:28.723][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:28.725][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.726][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.727][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:28.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:28.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.743][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:28.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:28.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.749][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:28.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:28.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.760][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:28.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:28.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.766][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:28.767][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:28.768][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.769][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.771][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:28.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:28.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.787][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:28.788][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:28.790][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.791][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.799][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:28.801][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:28.802][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.804][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.812][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:28.814][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:28.815][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.817][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.829][ef$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:28.831][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:28.834][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.836][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.850][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:28.852][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:28.855][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.857][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.865][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:09:28.866][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:28.867][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.869][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.876][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:28.878][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:28.879][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.880][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.888][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:28.890][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:28.891][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.892][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.910][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.17-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3002-content.xml".
biodb.DEBUG[2023-10-14 11:09:28.912][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:09:28.920][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2023-10-14 11:09:28.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:09:28.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:28.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:28.933][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:28.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:28.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:28.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:09:28.950][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:28.952][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:28.953][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.955][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:28.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:28.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.963][ef$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:28.964][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:28.966][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.967][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.969][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:28.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:28.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.974][ef$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:28.976][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:28.977][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.978][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.981][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:28.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:28.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.986][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:28.987][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:28.989][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.990][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.992][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:28.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:28.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:28.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:28.997][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:28.999][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:29.000][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:29.001][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:29.004][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:29.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:29.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:29.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:29.009][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:29.011][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:29.013][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:29.014][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:29.018][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:29.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:29.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:29.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:29.027][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:29.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:29.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:29.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:29.032][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:29.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:29.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:29.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:29.037][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:29.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:29.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:29.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:29.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:29.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:29.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:29.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:29.047][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:29.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:29.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:29.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:29.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:29.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:29.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:29.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:29.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:29.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:29.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:29.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:29.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:29.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:29.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:29.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:29.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:29.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:29.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:29.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:29.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:29.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:29.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:29.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:29.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:29.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:29.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:29.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:29.103][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3002.
biodb.TRACE[2023-10-14 11:09:29.106][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:29.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:29.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:29.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:29.111][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:29.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:29.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:29.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:29.117][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:29.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:29.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:29.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:29.122][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:29.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:29.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:29.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:29.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:29.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:29.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:29.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:29.132][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2023-10-14 11:09:29.134][private$loadEntries] Creating entries from ids [1]: "CCDS9633.1".
biodb.DEBUG[2023-10-14 11:09:29.182][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:09:29.201][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS9633.1".
biodb.TRACE[2023-10-14 11:09:29.203][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:09:29.205][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:09:29.206][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:09:29.208][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2023-10-14 11:09:29.209][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:09:29.210][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:09:29.224][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:09:29.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:29.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:29.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:29.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:29.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:29.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:29.240][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.DEBUG[2023-10-14 11:09:29.245][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:09:29.247][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:09:29.250][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.TRACE[2023-10-14 11:09:30.483][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1).
biodb.DEBUG[2023-10-14 11:09:31.640][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:09:31.643][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.content"
biodb.TRACE[2023-10-14 11:09:31.649][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.request"
biodb.TRACE[2023-10-14 11:09:31.653][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS9633.1.html"
biodb.DEBUG[2023-10-14 11:09:31.657][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:09:31.659][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:09:31.660][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2023-10-14 11:09:31.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:09:31.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:31.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:31.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:31.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:31.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:31.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:09:31.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:31.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:31.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.712][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:31.714][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:31.715][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.717][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.719][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:31.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:31.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:31.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:31.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.733][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:31.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:31.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:31.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:31.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.746][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:31.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:31.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:31.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:31.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:31.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:31.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:31.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:31.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:31.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:31.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:31.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:31.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:31.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:31.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:31.787][self$createEntryFromContent] Accession numbers: CCDS9633.1.
biodb.TRACE[2023-10-14 11:09:31.798][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:31.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:31.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.806][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:31.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:31.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.813][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:31.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:31.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.819][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:09:31.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:09:31.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.825][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:09:31.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:09:31.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.829][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-10-14 11:09:31.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-10-14 11:09:31.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.834][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-10-14 11:09:31.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-10-14 11:09:31.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:31.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:31.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.858][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:31.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:31.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:31.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:31.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:31.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:31.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:31.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:31.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:31.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:31.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:31.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:31.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:31.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:31.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.908][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:31.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:31.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.913][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:31.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:31.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.918][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:31.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:31.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:31.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:31.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:31.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:31.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:31.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:31.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.948][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:31.950][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:31.951][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.952][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:31.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:31.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.968][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:31.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:31.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.978][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:31.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:31.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.983][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:31.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:31.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.988][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:31.989][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:31.990][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.991][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:31.993][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:31.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:31.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:31.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.008][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:32.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:32.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.013][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:32.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:32.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.018][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:32.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:32.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.023][ef$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:32.024][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:32.025][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.026][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.027][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:32.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:32.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.043][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:32.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:32.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.048][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:32.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:32.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.053][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:32.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:32.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.058][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:32.059][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:32.060][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.062][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.063][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:32.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:32.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.080][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:32.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:32.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.085][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:32.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:32.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.091][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:32.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:32.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.102][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:32.103][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:32.105][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.106][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.108][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:32.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:32.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.127][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:32.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:32.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.132][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:32.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:32.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.137][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:32.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:32.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.142][ef$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:32.144][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:32.145][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.146][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.147][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:32.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:32.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.163][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:32.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:32.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.168][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:09:32.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:32.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.173][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:09:32.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:32.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.178][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:32.179][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:32.181][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.182][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.185][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:32.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:32.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.213][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:32.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:32.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.223][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:32.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:32.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.232][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:32.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:32.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.240][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:32.243][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:32.245][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.248][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.258][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:32.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:32.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.285][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:32.288][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:32.290][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.292][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.304][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:32.307][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:32.309][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.311][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.327][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:32.330][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:32.333][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.335][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.347][ef$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:32.348][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:32.350][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.351][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.359][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:32.361][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:32.362][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.364][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.373][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:09:32.375][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:32.376][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.377][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.384][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:32.386][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:32.387][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.388][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.396][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:32.398][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:32.400][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.401][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.425][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.17-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3627-content.xml".
biodb.DEBUG[2023-10-14 11:09:32.427][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:09:32.428][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2023-10-14 11:09:32.430][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:09:32.431][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:32.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:32.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:32.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:32.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:32.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:09:32.472][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:32.474][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:32.475][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.476][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:32.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:32.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.485][ef$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:32.487][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:32.488][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.489][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.492][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:32.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:32.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.498][ef$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:32.499][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:32.500][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.501][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.505][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:32.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:32.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.510][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:32.511][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:32.513][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.514][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.517][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:32.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:32.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.522][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:32.524][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:32.525][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.526][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.530][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:32.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:32.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.535][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:32.536][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:32.538][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.539][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.545][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:32.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:32.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.555][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:32.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:32.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.561][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:32.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:32.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.566][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:32.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:32.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:32.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:32.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:32.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:32.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:32.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:32.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:32.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:32.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:32.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:32.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:32.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:32.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:32.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:32.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:32.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:32.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:32.625][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3627.
biodb.TRACE[2023-10-14 11:09:32.628][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:32.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:32.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.635][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:32.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:32.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.642][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:32.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:32.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.649][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:32.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:32.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.657][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:32.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:32.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:32.664][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2023-10-14 11:09:32.666][private$loadEntries] Creating entries from ids [1]: "CCDS43240.1".
biodb.DEBUG[2023-10-14 11:09:32.668][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:09:32.670][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS43240.1".
biodb.TRACE[2023-10-14 11:09:32.673][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:09:32.678][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html".
biodb.DEBUG[2023-10-14 11:09:32.680][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:09:32.682][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:09:32.684][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2023-10-14 11:09:32.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:09:32.688][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:32.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:32.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:32.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:32.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:32.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:09:32.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:32.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:32.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.730][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:32.733][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:32.735][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.737][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.739][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:32.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:32.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.744][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:32.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:32.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.749][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:32.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:32.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:32.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:32.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.759][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:32.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:32.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:32.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:32.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:32.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:32.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:32.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:32.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:32.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:32.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:32.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:32.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:32.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:32.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:32.803][self$createEntryFromContent] Accession numbers: CCDS43240.1.
biodb.TRACE[2023-10-14 11:09:32.804][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:32.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:32.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.811][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:32.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:32.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.816][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:32.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:32.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.821][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:09:32.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:09:32.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.826][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:09:32.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:09:32.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.831][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-10-14 11:09:32.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-10-14 11:09:32.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.836][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-10-14 11:09:32.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-10-14 11:09:32.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:32.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:32.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.857][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:32.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:32.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:32.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:32.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:32.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:32.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:32.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:32.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:32.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:32.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:32.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:32.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:32.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:32.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.901][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:32.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:32.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.912][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:32.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:32.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.917][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:32.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:32.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:32.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:32.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:32.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:32.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:32.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:32.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.948][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:32.949][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:32.951][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.952][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:32.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:32.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.969][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:32.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:32.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.974][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:32.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:32.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.979][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:32.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:32.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.984][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:32.986][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:32.987][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.988][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:32.989][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:32.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:32.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:32.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.006][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:33.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:33.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.012][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:33.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:33.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.017][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:33.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:33.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.022][ef$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:33.023][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:33.024][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.025][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.027][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:33.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:33.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.049][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:33.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:33.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.054][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:33.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:33.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.063][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:33.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:33.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.072][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:33.073][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:33.075][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.077][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.079][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:33.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:33.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.100][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:33.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:33.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.105][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:33.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:33.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.111][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:33.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:33.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.116][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:33.118][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:33.119][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.120][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.121][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:33.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:33.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.138][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:33.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:33.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.143][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:33.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:33.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.148][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:33.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:33.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.153][ef$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:33.154][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:33.155][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.157][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.158][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:33.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:33.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.180][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:33.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:33.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.185][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:09:33.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:33.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.190][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:09:33.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:33.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.195][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:33.196][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:33.197][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.198][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.200][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:33.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:33.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.215][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:33.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:33.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.221][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:33.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:33.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.226][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:33.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:33.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.231][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:33.232][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:33.233][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.234][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.235][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:33.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:33.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.251][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:33.252][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:33.254][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.255][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.262][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:33.264][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:33.265][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.266][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.273][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:33.275][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:33.276][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.277][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.285][ef$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:33.286][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:33.288][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.289][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.303][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:33.304][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:33.306][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.307][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.315][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:09:33.316][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:33.318][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.319][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.326][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:33.328][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:33.329][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.330][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.338][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:33.340][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:33.341][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.342][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.361][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.17-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-4316-content.xml".
biodb.DEBUG[2023-10-14 11:09:33.363][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:09:33.365][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2023-10-14 11:09:33.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:09:33.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:33.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:33.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:33.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:33.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:33.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:09:33.394][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:33.396][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:33.397][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.398][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:33.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:33.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.406][ef$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:33.408][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:33.409][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.410][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.413][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:33.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:33.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.418][ef$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:33.420][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:33.421][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.422][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.425][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:33.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:33.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.430][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:33.431][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:33.432][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.433][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.436][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:33.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:33.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.441][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:33.443][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:33.444][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.445][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.453][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:33.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:33.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.459][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:33.460][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:33.462][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.463][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.467][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:33.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:33.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.475][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:33.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:33.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.481][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:33.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:33.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.486][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:33.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:33.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:33.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:33.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.496][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:33.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:33.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:33.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:33.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:33.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:33.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:33.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:33.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:33.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:33.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:33.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:33.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:33.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:33.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:33.530][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 4316.
biodb.TRACE[2023-10-14 11:09:33.533][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:33.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:33.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.538][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:33.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:33.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.543][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:33.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:33.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.547][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:33.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:33.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:33.552][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:33.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:33.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:33.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:33.557][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2023-10-14 11:09:33.559][private$loadEntries] Creating entries from ids [1]: "CCDS8317.1".
biodb.DEBUG[2023-10-14 11:09:33.560][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:09:33.562][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS8317.1".
biodb.TRACE[2023-10-14 11:09:33.563][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:09:33.565][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:09:33.566][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:09:33.567][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2023-10-14 11:09:33.569][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:09:33.570][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:09:33.573][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:09:33.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:33.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:33.737][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:33.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:33.741][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:33.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:33.744][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.DEBUG[2023-10-14 11:09:33.747][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:09:33.748][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:09:33.750][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.TRACE[2023-10-14 11:09:35.039][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1).
biodb.DEBUG[2023-10-14 11:09:36.513][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:09:36.515][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.content"
biodb.TRACE[2023-10-14 11:09:36.521][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.request"
biodb.TRACE[2023-10-14 11:09:36.525][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS8317.1.html"
biodb.DEBUG[2023-10-14 11:09:36.529][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:09:36.531][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:09:36.532][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2023-10-14 11:09:36.534][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:09:36.536][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:36.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:36.550][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:36.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:36.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:36.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:09:36.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:36.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:36.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.572][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:36.573][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:36.574][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.576][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.577][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:36.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:36.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.582][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:36.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:36.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.587][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:36.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:36.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:36.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:36.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.599][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:36.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:36.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:36.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:36.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:36.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:36.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:36.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:36.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:36.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:36.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:36.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:36.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:36.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:36.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:36.638][self$createEntryFromContent] Accession numbers: CCDS8317.1.
biodb.TRACE[2023-10-14 11:09:36.640][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:36.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:36.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.645][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:36.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:36.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.650][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:36.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:36.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.655][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:09:36.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:09:36.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.661][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:09:36.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:09:36.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.669][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-10-14 11:09:36.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-10-14 11:09:36.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.680][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-10-14 11:09:36.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-10-14 11:09:36.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:36.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:36.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.705][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:36.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:36.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:36.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:36.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:36.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:36.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:36.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:36.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:36.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:36.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:36.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:36.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:36.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:36.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.760][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:36.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:36.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.767][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:36.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:36.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.772][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:36.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:36.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:36.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:36.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:36.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:36.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:36.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:36.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.809][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:36.810][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:36.812][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.813][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:36.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:36.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.843][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:36.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:36.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.849][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:36.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:36.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.854][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:36.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:36.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.860][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:36.862][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:36.863][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.864][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.866][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:36.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:36.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.884][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:36.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:36.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.891][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:36.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:36.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.896][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:36.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:36.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.903][ef$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:36.904][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:36.905][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.907][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.908][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:36.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:36.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.927][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:36.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:36.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.933][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:36.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:36.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.939][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:36.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:36.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.944][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:36.946][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:36.947][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.948][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.950][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:36.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:36.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.979][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:36.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:36.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.987][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:36.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:36.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.993][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:36.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:36.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:36.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:36.998][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:37.000][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:37.002][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.003][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.005][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:37.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:37.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.029][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:37.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:37.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.037][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:37.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:37.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.044][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:37.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:37.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.049][ef$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:37.050][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:37.051][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.053][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.054][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:37.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:37.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.074][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:37.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:37.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.079][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:09:37.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:37.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.084][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:09:37.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:37.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.089][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:37.090][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:37.091][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.092][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.093][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:37.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:37.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.108][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:37.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:37.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.114][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:37.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:37.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.119][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:37.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:37.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.124][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:37.125][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:37.126][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.127][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.128][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:37.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:37.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.144][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:37.145][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:37.146][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.147][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.155][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:37.156][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:37.157][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.159][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.167][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:37.168][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:37.170][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.171][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.179][ef$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:37.181][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:37.182][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.183][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.190][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:37.192][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:37.193][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.194][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.201][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:09:37.203][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:37.204][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.205][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.213][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:37.215][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:37.216][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.217][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.224][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:37.226][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:37.227][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.228][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.262][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.17-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-50943-content.xml".
biodb.DEBUG[2023-10-14 11:09:37.264][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:09:37.265][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2023-10-14 11:09:37.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:09:37.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:37.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:37.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:37.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:37.281][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:37.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:09:37.313][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:37.315][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:37.316][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.318][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:37.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:37.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.327][ef$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:37.329][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:37.330][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.331][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.335][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:37.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:37.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.340][ef$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:37.341][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:37.342][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.343][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.348][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:37.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:37.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.353][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:37.354][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:37.355][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.356][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.360][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:37.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:37.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.366][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:37.367][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:37.368][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.370][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.374][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:37.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:37.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.379][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:37.380][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:37.381][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.382][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.391][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:37.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:37.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.403][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:37.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:37.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.408][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:37.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:37.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.413][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:37.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:37.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:37.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:37.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.423][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:37.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:37.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:37.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:37.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:37.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:37.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:37.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:37.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:37.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:37.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:37.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:37.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:37.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:37.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:37.456][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 50943.
biodb.TRACE[2023-10-14 11:09:37.459][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:37.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:37.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.464][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:37.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:37.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.468][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:37.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:37.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.473][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:37.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:37.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:37.478][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:37.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:37.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:37.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:37.482][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2023-10-14 11:09:37.484][private$loadEntries] Creating entries from ids [1]: "CCDS14323.1".
biodb.DEBUG[2023-10-14 11:09:37.485][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:09:37.487][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14323.1".
biodb.TRACE[2023-10-14 11:09:37.488][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:09:37.490][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:09:37.491][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:09:37.492][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2023-10-14 11:09:37.493][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:09:37.495][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:09:37.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:09:37.499][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:37.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:37.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:37.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:37.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:37.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:37.513][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.DEBUG[2023-10-14 11:09:37.516][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:09:37.517][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:09:37.519][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.TRACE[2023-10-14 11:09:38.645][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1).
biodb.DEBUG[2023-10-14 11:09:40.002][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:09:40.005][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.content"
biodb.TRACE[2023-10-14 11:09:40.012][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.request"
biodb.TRACE[2023-10-14 11:09:40.016][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14323.1.html"
biodb.DEBUG[2023-10-14 11:09:40.020][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:09:40.022][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:09:40.024][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2023-10-14 11:09:40.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:09:40.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:40.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:40.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:40.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:40.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:40.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:09:40.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:40.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:40.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.072][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:40.073][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:40.075][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.076][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.078][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:40.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:40.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.084][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:40.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:40.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:40.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:40.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:40.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:40.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:40.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:40.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:40.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:40.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:40.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:40.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:40.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:40.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:40.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:40.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:40.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:40.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:40.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:40.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:40.133][self$createEntryFromContent] Accession numbers: CCDS14323.1.
biodb.TRACE[2023-10-14 11:09:40.134][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:40.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:40.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.140][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:40.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:40.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.148][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:40.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:40.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.156][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:09:40.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:09:40.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.164][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:09:40.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:09:40.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.172][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-10-14 11:09:40.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-10-14 11:09:40.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.180][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-10-14 11:09:40.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-10-14 11:09:40.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:40.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:40.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.208][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:40.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:40.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:40.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:40.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:40.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:40.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:40.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:40.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:40.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:40.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:40.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:40.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:40.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:40.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.263][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:40.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:40.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.268][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:40.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:40.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.273][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:40.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:40.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:40.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:40.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:40.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:40.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:40.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:40.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.304][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:40.306][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:40.307][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.308][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:40.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:40.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.325][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:40.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:40.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.331][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:40.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:40.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.336][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:40.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:40.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.341][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:40.342][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:40.344][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.345][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.346][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:40.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:40.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.363][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:40.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:40.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.369][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:40.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:40.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.374][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:40.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:40.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.379][ef$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:40.380][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:40.382][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.383][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.384][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:40.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:40.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.400][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:40.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:40.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.406][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:40.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:40.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.411][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:40.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:40.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.416][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:40.417][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:40.419][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.420][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.421][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:40.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:40.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.439][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:40.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:40.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.449][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:40.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:40.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.464][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:40.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:40.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.473][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:40.475][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:40.477][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.479][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.481][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:40.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:40.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.505][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:40.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:40.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.513][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:40.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:40.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.520][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:40.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:40.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.528][ef$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:40.530][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:40.532][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.534][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.536][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:40.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:40.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.554][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:40.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:40.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.564][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:09:40.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:40.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.569][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:09:40.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:40.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.574][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:40.575][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:40.576][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.577][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.578][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:40.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:40.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.593][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:40.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:40.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.598][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:40.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:40.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.603][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:40.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:40.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.607][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:40.608][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:40.610][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.611][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.612][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:40.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:40.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.626][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:40.628][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:40.629][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.630][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.637][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:40.638][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:40.640][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.641][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.648][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:40.649][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:40.650][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.651][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.658][ef$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:40.660][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:40.661][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.662][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.669][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:40.670][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:40.672][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.673][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.680][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:09:40.681][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:40.682][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.683][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.690][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:40.692][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:40.693][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.694][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.701][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:40.702][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:40.704][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.705][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.720][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.17-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-5551-content.xml".
biodb.DEBUG[2023-10-14 11:09:40.722][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:09:40.724][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2023-10-14 11:09:40.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:09:40.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:40.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:40.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:40.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:40.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:40.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:09:40.748][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:40.750][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:40.751][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.752][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:40.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:40.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.759][ef$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:40.760][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:40.762][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.763][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.765][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:40.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:40.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.770][ef$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:40.771][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:40.772][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.773][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.775][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:40.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:40.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.780][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:40.782][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:40.783][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.784][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.786][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:40.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:40.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.792][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:40.793][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:40.794][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.795][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.798][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:40.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:40.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.803][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:40.804][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:40.805][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.807][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.810][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:40.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:40.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:40.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:40.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.822][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:40.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:40.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.827][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:40.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:40.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:40.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:40.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.836][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:40.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:40.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:40.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:40.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:40.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:40.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:40.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:40.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:40.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:40.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:40.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:40.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:40.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:40.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:40.871][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 5551.
biodb.TRACE[2023-10-14 11:09:40.873][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:40.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:40.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.878][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:40.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:40.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.883][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:40.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:40.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.888][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:40.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:40.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:40.892][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:40.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:40.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:40.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:40.897][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2023-10-14 11:09:40.898][private$loadEntries] Creating entries from ids [1]: "CCDS7305.1".
biodb.DEBUG[2023-10-14 11:09:40.900][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:09:40.902][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS7305.1".
biodb.TRACE[2023-10-14 11:09:41.162][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:09:41.164][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:09:41.166][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:09:41.168][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2023-10-14 11:09:41.169][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:09:41.170][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:09:41.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:09:41.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:41.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:41.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:41.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:41.187][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:41.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:41.190][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.DEBUG[2023-10-14 11:09:41.194][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:09:41.195][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:09:41.197][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.TRACE[2023-10-14 11:09:42.497][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1).
biodb.DEBUG[2023-10-14 11:09:43.840][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:09:43.844][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.content"
biodb.TRACE[2023-10-14 11:09:43.852][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.request"
biodb.TRACE[2023-10-14 11:09:43.856][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS7305.1.html"
biodb.DEBUG[2023-10-14 11:09:43.861][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:09:43.864][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:09:43.867][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2023-10-14 11:09:43.870][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:09:43.872][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:43.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:43.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:43.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:43.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:43.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:09:43.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:43.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:43.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:43.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:43.935][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:43.938][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:43.940][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:43.942][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:43.945][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:43.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:43.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:43.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:43.954][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:43.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:43.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:43.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:43.972][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:43.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:43.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:43.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:43.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:43.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:43.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:43.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:43.990][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:43.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:43.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:43.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:43.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:44.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:44.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:44.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:44.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:44.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:44.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:44.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:44.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:44.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:44.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:44.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:44.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:44.051][self$createEntryFromContent] Accession numbers: CCDS7305.1.
biodb.TRACE[2023-10-14 11:09:44.053][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:44.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:44.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.061][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:44.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:44.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.070][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:44.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:44.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.078][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:09:44.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:09:44.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.087][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:09:44.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:09:44.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.095][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-10-14 11:09:44.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-10-14 11:09:44.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.103][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-10-14 11:09:44.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-10-14 11:09:44.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:44.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:44.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.132][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:44.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:44.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:44.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:44.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:44.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:44.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:44.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:44.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:44.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:44.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:44.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:44.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:44.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:44.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.208][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:44.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:44.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.216][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:44.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:44.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.225][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:44.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:44.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:44.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:44.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:44.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:44.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:44.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:44.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.276][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:44.278][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:44.281][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.283][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:44.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:44.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.311][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:44.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:44.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.321][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:44.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:44.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.330][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:44.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:44.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.339][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:44.341][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:44.343][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.345][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.348][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:44.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:44.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.368][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:44.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:44.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.373][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:44.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:44.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.378][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:44.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:44.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.383][ef$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:44.385][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:44.386][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.387][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.388][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:44.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:44.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.404][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:44.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:44.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.409][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:44.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:44.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.414][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:44.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:44.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.419][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:44.420][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:44.422][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.423][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.424][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:44.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:44.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.440][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:44.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:44.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:44.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:44.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.450][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:44.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:44.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.455][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:44.456][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:44.458][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.459][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.460][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:44.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:44.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.479][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:44.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:44.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.485][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:44.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:44.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.494][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:44.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:44.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.501][ef$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:44.503][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:44.505][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.507][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.508][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:44.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:44.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.524][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:44.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:44.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.529][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:09:44.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:44.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.534][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:09:44.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:44.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.539][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:44.541][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:44.543][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.545][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.547][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:44.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:44.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.565][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:44.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:44.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.570][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:44.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:44.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.578][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:44.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:44.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.595][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:44.598][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:44.600][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.602][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.603][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:44.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:44.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.619][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:44.621][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:44.622][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.623][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.633][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:44.635][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:44.636][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.637][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.645][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:44.646][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:44.647][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.649][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.658][ef$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:44.659][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:44.661][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.662][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.670][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:44.672][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:44.673][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.674][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.682][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:09:44.683][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:44.684][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.686][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.698][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:44.699][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:44.701][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.702][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.712][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:44.713][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:44.714][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.716][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.733][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.17-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-916-content.xml".
biodb.DEBUG[2023-10-14 11:09:44.735][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:09:44.737][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2023-10-14 11:09:44.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:09:44.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:44.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:44.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:44.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:44.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:44.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:09:44.762][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:44.764][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:44.765][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.767][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:44.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:44.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.775][ef$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:44.776][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:44.777][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.779][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.781][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:44.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:44.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.786][ef$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:44.787][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:44.789][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.790][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.792][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:44.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:44.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.797][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:44.798][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:44.799][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.801][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.803][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:44.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:44.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.808][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:44.810][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:44.811][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.813][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.815][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:44.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:44.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.821][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:44.823][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:44.825][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.827][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.830][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:44.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:44.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.838][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:44.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:44.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.844][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:44.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:44.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.849][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:44.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:44.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:44.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:44.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.859][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:44.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:44.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:44.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:44.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:44.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:44.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:44.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:44.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:44.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:44.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:44.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:44.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:44.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:44.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:44.894][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 916.
biodb.TRACE[2023-10-14 11:09:44.897][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:44.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:44.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.902][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:44.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:44.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.907][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:44.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:44.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.912][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:44.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:44.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:44.917][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:44.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:44.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:44.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:44.922][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2023-10-14 11:09:44.923][private$loadEntries] Creating entries from ids [1]: "CCDS31685.1".
biodb.DEBUG[2023-10-14 11:09:44.925][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:09:44.927][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS31685.1".
biodb.TRACE[2023-10-14 11:09:44.928][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:09:44.930][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:09:44.931][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:09:44.932][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2023-10-14 11:09:44.934][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:09:44.935][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:09:44.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:09:44.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:44.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:44.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:44.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:44.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:44.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:44.954][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.DEBUG[2023-10-14 11:09:44.957][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:09:44.958][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:09:44.960][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.TRACE[2023-10-14 11:09:46.274][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1).
biodb.DEBUG[2023-10-14 11:09:47.386][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:09:47.389][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.content"
biodb.TRACE[2023-10-14 11:09:47.395][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.request"
biodb.TRACE[2023-10-14 11:09:47.399][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS31685.1.html"
biodb.DEBUG[2023-10-14 11:09:47.403][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:09:47.404][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:09:47.406][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2023-10-14 11:09:47.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:09:47.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:47.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:47.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:47.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:47.427][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:47.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:09:47.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:47.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:47.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.449][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:47.450][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:47.452][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.453][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.455][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:47.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:47.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.462][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:47.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:47.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.467][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:47.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:47.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:47.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:47.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.477][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:47.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:47.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:47.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:47.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:47.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:47.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:47.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:47.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:47.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:47.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:47.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:47.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:47.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:47.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:47.529][self$createEntryFromContent] Accession numbers: CCDS31685.1.
biodb.TRACE[2023-10-14 11:09:47.530][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:47.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:47.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.535][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:47.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:47.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.540][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:47.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:47.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.547][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:09:47.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:09:47.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.552][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:09:47.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:09:47.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.557][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-10-14 11:09:47.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-10-14 11:09:47.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.565][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-10-14 11:09:47.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-10-14 11:09:47.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:47.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:47.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.583][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:47.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:47.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:47.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:47.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:47.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:47.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:47.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:47.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:47.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:47.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:47.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:47.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:47.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:47.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.627][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:47.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:47.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.632][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:47.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:47.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.637][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:47.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:47.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:47.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:47.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:47.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:47.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:47.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:47.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.667][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:47.668][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:47.670][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.671][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:47.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:47.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.688][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:47.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:47.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.693][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:47.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:47.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.698][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:47.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:47.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.703][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:47.704][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:47.706][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.707][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.708][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:47.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:47.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.724][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:47.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:47.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.729][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:47.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:47.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.734][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:47.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:47.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.739][ef$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:47.740][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:47.741][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.743][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.744][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:47.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:47.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.759][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:47.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:47.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.765][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:47.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:47.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.770][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:47.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:47.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.775][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:47.776][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:47.777][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.778][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.780][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:47.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:47.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.795][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:47.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:47.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.802][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:47.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:47.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.808][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:47.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:47.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.815][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:47.817][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:47.818][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.819][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.821][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:47.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:47.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.837][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:47.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:47.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.842][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:47.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:47.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.847][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:47.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:47.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.852][ef$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:47.854][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:47.855][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.856][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.857][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:47.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:47.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.873][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:09:47.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:47.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.878][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:09:47.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:47.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.883][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:09:47.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:47.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.889][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:09:47.890][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:47.891][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.892][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.893][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:09:47.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:47.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.909][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:47.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:47.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.914][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:47.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:47.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.919][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:47.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:47.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.924][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:47.926][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:47.927][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.928][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.929][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-10-14 11:09:47.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:47.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.945][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:47.946][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:47.948][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.949][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.957][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:47.958][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:47.959][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.966][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.976][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:47.979][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:47.981][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:47.983][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:47.996][ef$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:47.999][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:48.001][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.003][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.016][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:48.018][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:48.020][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.023][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.035][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:09:48.038][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:48.040][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.042][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.055][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:48.057][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:48.059][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.061][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.074][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:48.076][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:48.078][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.081][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.095][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.17-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-9606-content.xml".
biodb.DEBUG[2023-10-14 11:09:48.098][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:09:48.100][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2023-10-14 11:09:48.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:09:48.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:48.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:48.120][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:48.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:48.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:48.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:09:48.132][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:48.135][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:48.137][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.139][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:48.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:48.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.150][ef$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:48.153][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:48.155][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.157][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.159][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:48.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:48.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.165][ef$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:48.167][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:48.168][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.169][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.170][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:48.172][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:48.173][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.174][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.176][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:48.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:48.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.181][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:48.182][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:48.183][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.184][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.186][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:48.187][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:48.188][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.189][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.191][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:48.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:48.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.196][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:48.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:48.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:48.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:48.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.206][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:48.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:48.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:48.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:48.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:48.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:48.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:48.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:48.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:48.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:48.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:48.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:48.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:48.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:48.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:48.244][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 9606.
biodb.TRACE[2023-10-14 11:09:48.247][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:48.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:48.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.255][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:48.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:48.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.264][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:48.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:48.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.272][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:09:48.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:09:48.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.280][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:09:48.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:09:48.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.289][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-10-14 11:09:48.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-10-14 11:09:48.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.297][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-10-14 11:09:48.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-10-14 11:09:48.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:48.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:48.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.326][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:48.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:48.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:48.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:48.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:48.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:48.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:48.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:48.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:48.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:48.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:48.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:48.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:48.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:48.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.375][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:48.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:48.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.382][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:48.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:48.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.389][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:48.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:48.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:48.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:48.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:48.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:48.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:48.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:48.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.428][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:48.429][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:48.431][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.432][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:48.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:48.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.451][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:48.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:48.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.460][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:48.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:48.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.469][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:48.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:48.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.475][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:48.477][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:48.478][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.479][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.480][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:48.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:48.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.501][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:48.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:48.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.507][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:48.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:48.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.515][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:48.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:48.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.524][ef$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:48.526][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:48.528][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.530][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.532][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:48.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:48.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.554][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:48.555][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:48.557][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.559][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.579][ef$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:48.582][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:48.584][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.586][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:48.594][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:48.596][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:48.598][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:48.600][ef$get] fields variable is a list.
biodb.INFO [2023-10-14 11:09:48.617][biodb::testThat]
biodb.INFO [2023-10-14 11:09:48.618][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2023-10-14 11:09:48.620][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:09:48.621][biodb::testThat]
biodb.DEBUG[2023-10-14 11:09:48.624][private$loadEntries] Creating entries from ids [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.DEBUG[2023-10-14 11:09:48.626][conn$getEntryContent] Get NCBI Gene entry content(s) for 8 id(s)...
biodb.TRACE[2023-10-14 11:09:48.627][cch$loadFileContent] Trying to load 8 files from cache: [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.TRACE[2023-10-14 11:09:48.665][cch$loadFileContent] file.exist = [8]: "FALSE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE".
biodb.TRACE[2023-10-14 11:09:49.644][loadFileContents] Loaded 7 files from cache: [7]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3002.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3627.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/4316.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/50943.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/5551.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/916.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/9606.xml".
biodb.DEBUG[2023-10-14 11:09:49.646][conn$getEntryContent] 7 NCBI Gene entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:09:49.648][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI Gene database "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-10-14 11:09:49.651][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:09:49.653][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2023-10-14 11:09:49.655][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2023-10-14 11:09:49.708][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833&retmode=xml".
biodb.DEBUG[2023-10-14 11:09:49.710][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:09:49.712][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:09:49.714][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833&retmode=xml".
biodb.TRACE[2023-10-14 11:09:49.803][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833&retmode=xml does not exist.
biodb.TRACE[2023-10-14 11:09:49.805][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-10-14 11:09:49.806][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833&retmode=xml" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-10-14 11:09:49.809][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833&retmode=xml).
biodb.TRACE[2023-10-14 11:09:50.122][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/2833.xml"
biodb.DEBUG[2023-10-14 11:09:50.138][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:09:50.140][self$createEntryFromContent] Creating NCBI Gene entries from 8 content(s).
biodb.DEBUG[2023-10-14 11:09:50.142][self$createEntryFromContent] Parsing 8 NCBI Gene entries.
biodb.DEBUG[2023-10-14 11:09:50.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:09:50.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:50.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:50.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:50.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:50.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:50.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:09:50.180][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:50.182][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:50.183][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.184][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:50.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:50.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.196][ef$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:50.198][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:50.199][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.200][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.203][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:50.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:50.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.209][ef$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:50.210][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:50.211][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.212][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.215][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:50.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:50.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.223][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:50.225][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:50.227][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.229][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.233][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:50.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:50.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.242][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:50.245][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:50.247][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.249][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.253][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:50.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:50.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.263][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:50.265][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:50.267][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.269][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.275][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:50.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:50.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.291][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:50.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:50.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.301][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:50.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:50.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.310][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:50.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:50.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:50.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:50.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.328][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:50.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:50.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:50.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:50.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:50.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:50.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:50.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:50.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:50.364][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:09:50.366][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:50.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:50.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:50.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:50.385][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:50.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:09:50.408][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:50.411][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:50.413][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.415][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:50.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:50.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.429][ef$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:50.431][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:50.433][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.435][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.439][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:50.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:50.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.448][ef$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:50.451][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:50.453][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.455][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.459][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:50.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:50.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.468][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:50.471][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:50.473][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.475][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.479][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:50.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:50.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.488][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:50.491][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:50.493][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.495][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.499][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:50.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:50.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.509][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:50.511][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:50.513][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.515][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.521][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:50.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:50.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.537][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:50.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:50.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:50.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:50.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.555][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:50.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:50.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:50.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:50.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.569][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:50.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:50.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:50.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:50.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:50.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:50.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:50.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:50.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:50.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:09:50.597][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:50.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:50.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:50.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:50.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:50.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:09:50.646][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:50.647][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:50.649][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.650][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:50.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:50.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.659][ef$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:50.660][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:50.661][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.662][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.666][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:50.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:50.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.671][ef$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:50.673][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:50.674][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.675][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.679][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:50.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:50.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.684][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:50.686][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:50.687][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.688][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.692][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:50.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:50.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.697][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:50.699][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:50.700][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.701][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.705][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:50.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:50.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.717][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:50.719][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:50.720][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.722][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.728][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:50.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:50.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.738][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:50.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:50.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.744][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:50.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:50.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.749][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:50.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:50.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:50.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:50.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.759][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:50.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:50.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:50.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:50.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:50.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:50.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:50.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:50.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:50.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:09:50.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:50.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:50.788][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:50.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:50.791][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:50.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:09:50.806][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:50.808][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:50.809][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.810][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:50.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:50.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.820][ef$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:50.821][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:50.823][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.824][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.827][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:50.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:50.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.832][ef$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:50.833][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:50.834][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.836][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.839][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:50.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:50.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.844][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:50.845][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:50.846][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.848][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.851][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:50.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:50.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.856][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:50.857][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:50.859][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.860][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.863][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:50.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:50.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.869][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:50.870][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:50.871][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.873][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.877][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:50.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:50.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.886][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:50.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:50.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.892][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:50.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:50.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.897][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:50.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:50.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:50.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:50.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.907][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:50.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:50.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:50.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:50.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:50.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:50.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:50.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:50.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:50.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:09:50.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:50.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:50.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:50.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:50.940][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:50.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:09:50.973][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:50.975][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:50.977][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.979][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:50.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:50.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:50.991][ef$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:50.993][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:50.994][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:50.995][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.000][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:51.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:51.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.006][ef$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:51.007][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:51.008][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.010][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.015][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:51.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:51.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.020][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:51.022][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:51.023][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.024][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.029][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:51.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:51.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.034][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:51.036][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:51.037][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.038][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.043][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:51.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:51.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.049][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:51.050][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:51.051][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.052][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.062][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:51.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:51.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.077][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:51.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:51.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.083][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:51.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:51.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:51.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:51.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:51.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:51.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:51.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:09:51.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:51.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:51.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:51.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:51.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:51.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:09:51.143][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.145][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.146][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.148][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.156][ef$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:51.157][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:51.159][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.161][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.165][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:51.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:51.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.171][ef$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:51.172][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:51.174][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.175][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.177][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:51.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:51.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.183][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:51.184][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:51.185][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.186][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.189][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:51.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:51.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.194][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:51.196][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:51.197][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.198][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.201][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:51.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:51.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.206][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:51.207][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:51.208][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.210][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.213][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:51.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:51.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.222][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:51.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:51.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.228][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:51.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:51.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.233][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:51.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:51.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.243][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:51.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:51.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:51.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:09:51.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:51.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:51.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:51.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:51.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:51.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:09:51.296][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.298][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.299][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.301][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.309][ef$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:51.310][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:51.311][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.312][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.315][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:51.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:51.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.320][ef$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:51.322][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:51.323][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.324][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.326][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:51.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:51.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.332][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:51.333][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:51.334][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.336][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.338][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:51.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:51.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.343][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:51.345][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:51.346][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.347][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.350][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:51.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:51.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.355][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:51.357][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:51.358][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.359][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.362][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:51.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:51.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.373][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:51.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:51.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.379][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:51.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:51.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.385][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:51.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:51.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.398][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:51.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:51.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:51.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:09:51.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:51.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:51.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:51.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:51.433][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:51.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:09:51.437][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.439][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.440][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.441][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.448][ef$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:51.449][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:51.451][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.453][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.455][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-10-14 11:09:51.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-10-14 11:09:51.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.463][ef$get] Asked field names are: location.
biodb.TRACE[2023-10-14 11:09:51.465][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-10-14 11:09:51.466][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.468][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.470][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:51.472][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:51.474][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.475][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.477][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-10-14 11:09:51.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-10-14 11:09:51.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.485][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-10-14 11:09:51.488][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:51.490][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.491][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.493][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:51.496][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-10-14 11:09:51.497][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.499][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.500][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:51.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:51.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.506][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:51.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:51.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.516][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:51.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-10-14 11:09:51.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:51.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:51.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:51.676][self$createEntryFromContent] Accession numbers: 2833, 3002, 3627, 4316, 50943, 5551, 916, 9606.
biodb.TRACE[2023-10-14 11:09:51.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-10-14 11:09:51.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-10-14 11:09:51.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-10-14 11:09:51.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-10-14 11:09:51.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-10-14 11:09:51.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-10-14 11:09:51.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.700][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-10-14 11:09:51.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-10-14 11:09:51.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-10-14 11:09:51.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-10-14 11:09:51.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-10-14 11:09:51.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-10-14 11:09:51.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-10-14 11:09:51.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-10-14 11:09:51.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-10-14 11:09:51.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-10-14 11:09:51.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-10-14 11:09:51.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-10-14 11:09:51.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-10-14 11:09:51.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-10-14 11:09:51.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-10-14 11:09:51.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-10-14 11:09:51.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-10-14 11:09:51.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-10-14 11:09:51.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-10-14 11:09:51.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-10-14 11:09:51.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-10-14 11:09:51.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-10-14 11:09:51.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-10-14 11:09:51.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-10-14 11:09:51.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-10-14 11:09:51.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-10-14 11:09:51.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-10-14 11:09:51.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-10-14 11:09:51.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-10-14 11:09:51.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-10-14 11:09:51.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-10-14 11:09:51.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-10-14 11:09:51.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-10-14 11:09:51.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-10-14 11:09:51.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-10-14 11:09:51.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-10-14 11:09:51.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-10-14 11:09:51.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-10-14 11:09:51.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-10-14 11:09:51.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-10-14 11:09:51.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-10-14 11:09:51.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-10-14 11:09:51.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-10-14 11:09:51.901][biodb::testThat]
biodb.INFO [2023-10-14 11:09:51.902][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2023-10-14 11:09:51.903][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:09:51.905][biodb::testThat]
biodb.TRACE[2023-10-14 11:09:51.909][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:09:51.910][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:51.911][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.912][ef$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:51.914][function(conn, opt)] Testing searchForEntries() with entry "2833" and field "name".
biodb.TRACE[2023-10-14 11:09:51.934][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:09:51.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:51.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.940][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:09:51.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:51.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:51.945][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:09:51.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:51.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:51.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:51.953][function(conn, opt)] With value "GPR9".
biodb.DEBUG[2023-10-14 11:09:51.988][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2023-10-14 11:09:51.992][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:09:51.993][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:09:51.995][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1".
biodb.TRACE[2023-10-14 11:09:52.041][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1 does not exist.
biodb.TRACE[2023-10-14 11:09:52.042][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-10-14 11:09:52.044][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-10-14 11:09:52.046][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1).
biodb.DEBUG[2023-10-14 11:09:52.086][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:09:52.090][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content"
biodb.TRACE[2023-10-14 11:09:52.097][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.request"
biodb.DEBUG[2023-10-14 11:09:52.100][function(conn, opt)] With found IDs [1]: "2833".
biodb.INFO [2023-10-14 11:09:52.127][biodb::testThat]
biodb.INFO [2023-10-14 11:09:52.128][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2023-10-14 11:09:52.129][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:09:52.130][biodb::testThat]
biodb.TRACE[2023-10-14 11:09:52.147][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:09:52.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:52.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:52.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:52.152][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:09:52.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:52.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:52.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:52.157][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:09:52.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:52.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:52.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:52.196][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2023-10-14 11:09:52.200][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:09:52.202][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2023-10-14 11:09:52.203][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:09:52.207][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.INFO [2023-10-14 11:09:52.234][biodb::testThat]
biodb.INFO [2023-10-14 11:09:52.235][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2023-10-14 11:09:52.236][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:09:52.237][biodb::testThat]
biodb.TRACE[2023-10-14 11:09:52.252][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:52.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:52.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:52.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:52.257][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:52.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:52.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:52.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:52.262][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:52.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:52.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:52.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:52.269][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:52.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:52.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:52.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:52.276][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:52.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:52.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:52.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:52.282][private$computeField] Compute value for field "aa.seq".
biodb.TRACE[2023-10-14 11:09:52.285][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:52.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:52.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:52.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:52.292][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:52.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:52.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:52.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:52.297][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:52.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:52.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:52.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:52.304][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:09:52.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:09:52.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:52.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:52.310][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:09:52.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:09:52.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:52.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:52.315][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-10-14 11:09:52.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-10-14 11:09:52.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:52.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:52.320][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-10-14 11:09:52.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-10-14 11:09:52.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:52.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:52.330][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:52.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:52.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:52.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:52.336][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:52.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:52.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:52.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:52.341][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:09:52.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:09:52.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:52.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:52.353][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:09:52.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:09:52.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:52.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:52.358][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-10-14 11:09:52.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-10-14 11:09:52.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:52.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:52.364][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-10-14 11:09:52.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-10-14 11:09:52.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:52.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-10-14 11:09:52.384][biodb::testThat]
biodb.INFO [2023-10-14 11:09:52.386][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2023-10-14 11:09:52.387][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:09:52.389][biodb::testThat]
biodb.INFO [2023-10-14 11:09:52.408][biodb::testThat]
biodb.INFO [2023-10-14 11:09:52.410][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2023-10-14 11:09:52.411][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:09:52.413][biodb::testThat]
biodb.INFO [2023-10-14 11:09:52.429][biodb::testThat]
biodb.INFO [2023-10-14 11:09:52.431][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2023-10-14 11:09:52.432][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:09:52.433][biodb::testThat]
biodb.DEBUG[2023-10-14 11:09:52.439][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/gene?term=2833".
biodb.DEBUG[2023-10-14 11:09:55.137][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/gene?term=2833.
biodb.INFO [2023-10-14 11:09:57.876][biodb::testThat]
biodb.INFO [2023-10-14 11:09:57.877][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2023-10-14 11:09:57.878][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:09:57.879][biodb::testThat]
biodb.INFO [2023-10-14 11:09:57.890][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2023-10-14 11:09:57.892][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.gene from the request scheduler
biodb.INFO [2023-10-14 11:09:57.894][self$deleteConn] Connector "ncbi.gene" deleted.
biodb.DEBUG[2023-10-14 11:09:57.897][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2023-10-14 11:09:57.907][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2023-10-14 11:09:57.908][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2023-10-14 11:09:57.909][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:57.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:57.912][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:57.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:57.915][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:57.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2023-10-14 11:09:57.922][biodb::testContext]
biodb.INFO [2023-10-14 11:09:57.923][biodb::testContext] ********************************************************************************
biodb.INFO [2023-10-14 11:09:57.924][biodb::testContext] Test context - Pubchem comp long tests
biodb.INFO [2023-10-14 11:09:57.926][biodb::testContext] ********************************************************************************
biodb.INFO [2023-10-14 11:09:57.927][biodb::testContext]
biodb.INFO [2023-10-14 11:09:57.930][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.8.1.
biodb.DEBUG[2023-10-14 11:09:57.932][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.17-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2023-10-14 11:09:57.938][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-10-14 11:09:57.939][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2023-10-14 11:09:57.941][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2023-10-14 11:09:57.942][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:57.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:57.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:57.945][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2023-10-14 11:09:57.962][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2023-10-14 11:09:57.963][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:57.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:57.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:57.967][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2023-10-14 11:09:57.969][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2023-10-14 11:09:57.970][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:57.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:57.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:57.973][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2023-10-14 11:09:57.974][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2023-10-14 11:09:57.976][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2023-10-14 11:09:57.977][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:57.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:57.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:57.980][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2023-10-14 11:09:57.982][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2023-10-14 11:09:57.983][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2023-10-14 11:09:57.985][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:57.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:57.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:57.991][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2023-10-14 11:09:57.992][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2023-10-14 11:09:57.994][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:57.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:57.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:57.997][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2023-10-14 11:09:57.998][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2023-10-14 11:09:58.000][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2023-10-14 11:09:58.001][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.004][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2023-10-14 11:09:58.006][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2023-10-14 11:09:58.007][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.010][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2023-10-14 11:09:58.012][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2023-10-14 11:09:58.013][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2023-10-14 11:09:58.014][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.019][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2023-10-14 11:09:58.021][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2023-10-14 11:09:58.023][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2023-10-14 11:09:58.025][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2023-10-14 11:09:58.027][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2023-10-14 11:09:58.029][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2023-10-14 11:09:58.030][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.034][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2023-10-14 11:09:58.035][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2023-10-14 11:09:58.036][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.040][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2023-10-14 11:09:58.042][self$set] Set key entries.sep to "|".
biodb.DEBUG[2023-10-14 11:09:58.044][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.048][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2023-10-14 11:09:58.050][self$set] Set key offline to FALSE.
biodb.DEBUG[2023-10-14 11:09:58.051][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.054][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2023-10-14 11:09:58.056][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2023-10-14 11:09:58.058][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.059][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.061][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2023-10-14 11:09:58.062][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2023-10-14 11:09:58.064][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.067][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2023-10-14 11:09:58.068][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2023-10-14 11:09:58.073][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2023-10-14 11:09:58.074][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.078][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2023-10-14 11:09:58.079][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2023-10-14 11:09:58.081][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2023-10-14 11:09:58.082][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.085][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2023-10-14 11:09:58.088][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:58.102][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2023-10-14 11:09:58.103][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.105][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-10-14 11:09:58.106][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.107][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-10-14 11:09:58.109][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:58.110][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-10-14 11:09:58.111][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-10-14 11:09:58.112][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-10-14 11:09:58.113][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.115][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2023-10-14 11:09:58.116][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-10-14 11:09:58.117][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:58.118][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.120][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-10-14 11:09:58.120][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-10-14 11:09:58.120][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-10-14 11:09:58.120][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-10-14 11:09:58.120][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-10-14 11:09:58.121][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-10-14 11:09:58.122][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:58.123][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:58.124][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-10-14 11:09:58.126][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:58.127][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:58.128][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-10-14 11:09:58.129][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:58.130][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-10-14 11:09:58.131][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-10-14 11:09:58.132][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:58.134][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:58.135][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2023-10-14 11:09:58.137][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:58.139][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2023-10-14 11:09:58.140][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.141][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-10-14 11:09:58.142][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.144][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-10-14 11:09:58.145][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:58.146][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-10-14 11:09:58.147][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-10-14 11:09:58.148][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-10-14 11:09:58.150][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.151][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2023-10-14 11:09:58.152][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-10-14 11:09:58.153][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:58.155][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.156][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-10-14 11:09:58.156][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-10-14 11:09:58.156][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-10-14 11:09:58.156][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-10-14 11:09:58.156][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-10-14 11:09:58.157][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-10-14 11:09:58.158][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:58.159][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:58.161][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-10-14 11:09:58.162][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:58.163][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:58.164][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-10-14 11:09:58.165][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:58.167][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-10-14 11:09:58.168][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-10-14 11:09:58.169][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:58.170][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:58.172][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2023-10-14 11:09:58.174][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.175][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2023-10-14 11:09:58.176][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.177][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-10-14 11:09:58.179][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.180][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-10-14 11:09:58.181][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:58.182][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-10-14 11:09:58.184][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-10-14 11:09:58.185][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-10-14 11:09:58.186][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:58.187][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2023-10-14 11:09:58.189][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-10-14 11:09:58.190][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:58.191][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.192][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:58.194][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-10-14 11:09:58.195][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:58.196][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:58.197][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-10-14 11:09:58.199][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:58.200][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:58.201][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-10-14 11:09:58.202][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:58.204][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-10-14 11:09:58.205][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-10-14 11:09:58.206][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:58.214][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:58.217][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2023-10-14 11:09:58.219][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.220][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2023-10-14 11:09:58.222][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.223][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-10-14 11:09:58.224][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.225][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-10-14 11:09:58.227][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:58.228][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-10-14 11:09:58.229][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-10-14 11:09:58.231][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-10-14 11:09:58.232][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:58.233][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2023-10-14 11:09:58.234][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-10-14 11:09:58.236][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:58.237][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.238][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:58.239][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-10-14 11:09:58.241][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:58.242][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:58.243][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-10-14 11:09:58.244][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:58.246][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:58.247][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-10-14 11:09:58.248][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:58.249][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-10-14 11:09:58.251][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-10-14 11:09:58.252][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:58.253][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:58.255][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-10-14 11:09:58.256][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.258][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:58.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:58.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.264][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:58.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:58.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.270][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.271][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:58.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:58.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.275][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:58.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:58.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.281][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:58.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:58.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.287][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:58.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:58.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.292][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:58.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:58.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.298][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:58.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:58.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.304][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:58.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:58.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:58.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:58.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.316][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:58.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:58.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.322][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.323][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:58.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:58.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.328][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:58.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:58.332][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.334][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:58.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:58.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.340][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:58.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:58.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.346][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:58.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:58.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.352][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:58.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:58.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.357][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2023-10-14 11:09:58.359][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2023-10-14 11:09:58.361][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2023-10-14 11:09:58.363][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2023-10-14 11:09:58.364][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-10-14 11:09:58.366][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2023-10-14 11:09:58.367][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2023-10-14 11:09:58.369][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2023-10-14 11:09:58.371][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2023-10-14 11:09:58.373][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2023-10-14 11:09:58.374][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-10-14 11:09:58.376][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2023-10-14 11:09:58.378][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2023-10-14 11:09:58.379][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2023-10-14 11:09:58.381][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-10-14 11:09:58.383][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-10-14 11:09:58.384][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2023-10-14 11:09:58.386][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2023-10-14 11:09:58.389][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-10-14 11:09:58.391][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2023-10-14 11:09:58.394][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2023-10-14 11:09:58.396][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2023-10-14 11:09:58.398][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2023-10-14 11:09:58.400][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2023-10-14 11:09:58.402][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2023-10-14 11:09:58.403][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2023-10-14 11:09:58.405][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2023-10-14 11:09:58.406][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2023-10-14 11:09:58.408][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2023-10-14 11:09:58.410][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2023-10-14 11:09:58.411][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2023-10-14 11:09:58.413][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2023-10-14 11:09:58.415][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2023-10-14 11:09:58.416][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2023-10-14 11:09:58.418][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2023-10-14 11:09:58.419][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2023-10-14 11:09:58.421][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2023-10-14 11:09:58.423][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2023-10-14 11:09:58.424][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2023-10-14 11:09:58.426][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2023-10-14 11:09:58.428][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2023-10-14 11:09:58.429][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2023-10-14 11:09:58.431][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2023-10-14 11:09:58.433][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2023-10-14 11:09:58.434][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2023-10-14 11:09:58.436][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-10-14 11:09:58.437][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2023-10-14 11:09:58.439][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2023-10-14 11:09:58.441][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2023-10-14 11:09:58.442][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2023-10-14 11:09:58.444][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2023-10-14 11:09:58.446][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2023-10-14 11:09:58.447][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2023-10-14 11:09:58.449][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2023-10-14 11:09:58.450][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2023-10-14 11:09:58.452][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2023-10-14 11:09:58.454][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2023-10-14 11:09:58.455][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2023-10-14 11:09:58.457][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2023-10-14 11:09:58.459][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2023-10-14 11:09:58.460][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2023-10-14 11:09:58.462][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2023-10-14 11:09:58.463][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2023-10-14 11:09:58.465][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2023-10-14 11:09:58.467][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2023-10-14 11:09:58.468][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2023-10-14 11:09:58.470][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-10-14 11:09:58.472][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-10-14 11:09:58.473][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2023-10-14 11:09:58.475][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2023-10-14 11:09:58.476][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2023-10-14 11:09:58.478][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2023-10-14 11:09:58.480][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2023-10-14 11:09:58.481][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2023-10-14 11:09:58.483][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2023-10-14 11:09:58.485][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2023-10-14 11:09:58.486][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2023-10-14 11:09:58.488][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2023-10-14 11:09:58.489][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2023-10-14 11:09:58.491][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2023-10-14 11:09:58.493][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2023-10-14 11:09:58.494][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2023-10-14 11:09:58.496][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2023-10-14 11:09:58.498][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2023-10-14 11:09:58.500][initialize] This is biodb version 1.8.1.
biodb.DEBUG[2023-10-14 11:09:58.501][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-10-14 11:09:58.502][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:58.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:58.505][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.507][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:58.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:58.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:58.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:58.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.516][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:58.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:58.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:58.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:58.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.524][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:58.526][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:58.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:58.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:58.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.532][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:58.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:58.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:58.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:58.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.540][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:58.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:58.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:58.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:58.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.548][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:58.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:58.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:58.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:58.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.556][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:58.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:58.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:58.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:58.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.564][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:58.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:58.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:58.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:58.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.572][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:58.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:58.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:58.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:58.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:58.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:58.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:58.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:58.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.588][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:58.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:58.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:58.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:58.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.595][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:58.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:58.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:58.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:58.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.603][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:58.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:58.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:58.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:58.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:58.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:58.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:58.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:58.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.618][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:58.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:58.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:58.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:58.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.632][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:58.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:58.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:58.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:58.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.640][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:09:58.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:58.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:58.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:58.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:58.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:09:58.650][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.17-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2023-10-14 11:09:58.652][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2023-10-14 11:09:58.654][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.655][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2023-10-14 11:09:58.657][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.658][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-10-14 11:09:58.659][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.661][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-10-14 11:09:58.662][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.663][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-10-14 11:09:58.664][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2023-10-14 11:09:58.665][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-10-14 11:09:58.667][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.668][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2023-10-14 11:09:58.669][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-10-14 11:09:58.670][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2023-10-14 11:09:58.670][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2023-10-14 11:09:58.672][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:58.673][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:58.674][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-10-14 11:09:58.675][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:58.676][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:58.678][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-10-14 11:09:58.679][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:58.680][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:58.681][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-10-14 11:09:58.682][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2023-10-14 11:09:58.682][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2023-10-14 11:09:58.684][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-10-14 11:09:58.685][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-10-14 11:09:58.686][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.687][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:58.689][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2023-10-14 11:09:58.691][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.692][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2023-10-14 11:09:58.693][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.694][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-10-14 11:09:58.696][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.697][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-10-14 11:09:58.699][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.701][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-10-14 11:09:58.703][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-10-14 11:09:58.705][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-10-14 11:09:58.706][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.708][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2023-10-14 11:09:58.709][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-10-14 11:09:58.711][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2023-10-14 11:09:58.711][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2023-10-14 11:09:58.711][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2023-10-14 11:09:58.711][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2023-10-14 11:09:58.711][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2023-10-14 11:09:58.711][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2023-10-14 11:09:58.712][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:58.713][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-10-14 11:09:58.714][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-10-14 11:09:58.716][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:58.717][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:58.718][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-10-14 11:09:58.719][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:58.720][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:58.721][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-10-14 11:09:58.722][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-10-14 11:09:58.722][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2023-10-14 11:09:58.724][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-10-14 11:09:58.725][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-10-14 11:09:58.726][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.727][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:58.729][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2023-10-14 11:09:58.731][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:58.732][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2023-10-14 11:09:58.733][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.735][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-10-14 11:09:58.736][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.737][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-10-14 11:09:58.738][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.739][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-10-14 11:09:58.741][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-10-14 11:09:58.742][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-10-14 11:09:58.743][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.744][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2023-10-14 11:09:58.746][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-10-14 11:09:58.747][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2023-10-14 11:09:58.747][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:09:58.747][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:09:58.747][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:09:58.747][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:09:58.747][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:09:58.747][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:09:58.747][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:09:58.747][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:09:58.747][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:09:58.747][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2023-10-14 11:09:58.747][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:09:58.747][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:09:58.747][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:09:58.748][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:58.750][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-10-14 11:09:58.750][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-10-14 11:09:58.750][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-10-14 11:09:58.751][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2023-10-14 11:09:58.755][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:58.757][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:58.759][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-10-14 11:09:58.760][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:58.761][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:58.762][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-10-14 11:09:58.764][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-10-14 11:09:58.764][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2023-10-14 11:09:58.764][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2023-10-14 11:09:58.765][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-10-14 11:09:58.766][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-10-14 11:09:58.767][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.768][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2023-10-14 11:09:58.770][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2023-10-14 11:09:58.772][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.773][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2023-10-14 11:09:58.775][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.776][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-10-14 11:09:58.777][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.778][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-10-14 11:09:58.780][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.781][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-10-14 11:09:58.782][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-10-14 11:09:58.783][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-10-14 11:09:58.785][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.786][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2023-10-14 11:09:58.787][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-10-14 11:09:58.788][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2023-10-14 11:09:58.788][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2023-10-14 11:09:58.789][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-10-14 11:09:58.791][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:09:58.792][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2023-10-14 11:09:58.793][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:58.794][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:58.795][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-10-14 11:09:58.797][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:09:58.798][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:09:58.799][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-10-14 11:09:58.800][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-10-14 11:09:58.800][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2023-10-14 11:09:58.800][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2023-10-14 11:09:58.802][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-10-14 11:09:58.803][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-10-14 11:09:58.804][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-10-14 11:09:58.805][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2023-10-14 11:09:58.807][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2023-10-14 11:09:58.808][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-10-14 11:09:58.810][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-10-14 11:09:58.812][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2023-10-14 11:09:58.814][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-10-14 11:09:58.817][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2023-10-14 11:09:58.826][super$initialize] Initialize connector ncbi.pubchem.comp.
biodb.DEBUG[2023-10-14 11:09:58.827][super$initialize] Register connector ncbi.pubchem.comp with the request scheduler
biodb.DEBUG[2023-10-14 11:09:58.829][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.comp.
biodb.DEBUG[2023-10-14 11:09:58.831][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2023-10-14 11:09:58.832][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2023-10-14 11:09:58.834][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2023-10-14 11:09:58.836][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2023-10-14 11:09:58.837][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2023-10-14 11:09:58.838][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2023-10-14 11:09:58.840][rule$addConnector] Connector "ncbi.pubchem.comp" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2023-10-14 11:09:58.869][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.comp for database class ncbi.pubchem.comp .
biodb.INFO [2023-10-14 11:09:58.876][biodb::testThat]
biodb.INFO [2023-10-14 11:09:58.877][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2023-10-14 11:09:58.879][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:09:58.880][biodb::testThat]
biodb.TRACE[2023-10-14 11:09:58.885][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.17-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-2-content.xml".
biodb.DEBUG[2023-10-14 11:09:58.887][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:09:58.891][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2023-10-14 11:09:58.894][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:09:58.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:09:58.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:09:58.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:09:58.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:09:58.910][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:09:58.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:09:58.917][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:58.919][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:58.920][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:58.921][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:58.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:58.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:58.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:58.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:58.929][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:09:58.930][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:09:58.931][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:58.932][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:58.934][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:09:58.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:09:58.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:58.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:58.941][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:09:58.943][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:09:58.944][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:58.945][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:58.947][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:09:58.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:09:58.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:58.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:58.952][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:09:58.954][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:09:58.955][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:58.956][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:58.958][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:09:58.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:09:58.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:58.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:58.963][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:09:58.964][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:09:58.965][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:58.966][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:58.968][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:09:58.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:09:58.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:58.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:58.973][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:09:58.974][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:09:58.976][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:58.977][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:58.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:09:58.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:09:58.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:58.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:58.983][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:09:58.985][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:09:58.986][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:58.987][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:58.989][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:09:58.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:09:58.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:58.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:58.994][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:09:58.995][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:09:58.996][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:58.997][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:58.999][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:09:59.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:09:59.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.004][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:09:59.005][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:09:59.007][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.008][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.009][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:09:59.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:09:59.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.015][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:09:59.016][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:09:59.017][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.018][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.020][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:09:59.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:09:59.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.025][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:09:59.027][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:09:59.029][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.031][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.033][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:09:59.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:09:59.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.040][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:09:59.043][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:09:59.045][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.047][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:09:59.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:09:59.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.054][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:09:59.055][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:09:59.057][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.058][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.059][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:09:59.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:09:59.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.064][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:09:59.066][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:09:59.067][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.068][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.071][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:09:59.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:09:59.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.076][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-10-14 11:09:59.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:09:59.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:09:59.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:09:59.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.094][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:09:59.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:09:59.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.099][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-10-14 11:09:59.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:09:59.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.104][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:09:59.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:09:59.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:09:59.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:09:59.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.114][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-10-14 11:09:59.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:09:59.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.119][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:09:59.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:09:59.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:09:59.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:09:59.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.129][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-10-14 11:09:59.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:09:59.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.134][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:09:59.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:09:59.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:09:59.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:09:59.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.144][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-10-14 11:09:59.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:09:59.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.149][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:09:59.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:09:59.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:09:59.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:09:59.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.158][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:09:59.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:59.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.164][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:09:59.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:09:59.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.168][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:09:59.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:09:59.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:59.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:59.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.178][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:09:59.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:09:59.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:59.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:59.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:59.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:59.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:59.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:59.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:59.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:59.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:59.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:59.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:59.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:59.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:09:59.213][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2.
biodb.TRACE[2023-10-14 11:09:59.215][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:59.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:59.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.220][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:09:59.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:09:59.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.226][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:59.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:09:59.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.231][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:09:59.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:09:59.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.236][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:09:59.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:09:59.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.241][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-10-14 11:09:59.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-10-14 11:09:59.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.246][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-10-14 11:09:59.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-10-14 11:09:59.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:59.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:59.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.264][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:09:59.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:09:59.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:59.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:59.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:59.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:59.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:59.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:59.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:59.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:59.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:59.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:59.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:59.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:59.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.307][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:09:59.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:09:59.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.313][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:09:59.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:09:59.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.317][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:09:59.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:09:59.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:59.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:59.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:59.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:59.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:59.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:59.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.359][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:59.362][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:59.364][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.366][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:59.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:59.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.385][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:09:59.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:09:59.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:09:59.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:09:59.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:09:59.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:09:59.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.402][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:09:59.403][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:09:59.404][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.406][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.407][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:09:59.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:09:59.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:09:59.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:09:59.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:09:59.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:09:59.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:09:59.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:09:59.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.442][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:09:59.443][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:09:59.445][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.446][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:09:59.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:09:59.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.463][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:09:59.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:09:59.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.469][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:09:59.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:09:59.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.474][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:09:59.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:09:59.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.479][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:09:59.480][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:09:59.482][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.484][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.485][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:09:59.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:09:59.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.501][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:09:59.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:09:59.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.506][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:09:59.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:09:59.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.511][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:09:59.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:09:59.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.516][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:09:59.517][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:09:59.518][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.519][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.528][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:09:59.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:09:59.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.544][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:09:59.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:09:59.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.550][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:09:59.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:09:59.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.555][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:09:59.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:09:59.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.560][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:09:59.561][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:09:59.563][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.564][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.565][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:09:59.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:09:59.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.584][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:09:59.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:09:59.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.589][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:09:59.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:09:59.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.594][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:09:59.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:09:59.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.599][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:09:59.600][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:09:59.601][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.602][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.603][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:09:59.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:09:59.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.619][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:09:59.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:09:59.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.624][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:09:59.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:09:59.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:09:59.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:09:59.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.634][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:09:59.636][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:09:59.637][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.638][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:09:59.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:09:59.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.657][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:09:59.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:09:59.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.663][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:09:59.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:09:59.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.668][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:09:59.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:09:59.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.675][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:09:59.677][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:09:59.679][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.681][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.682][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:09:59.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:09:59.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:09:59.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:09:59.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.704][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:09:59.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:09:59.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.710][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:09:59.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:09:59.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.716][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:09:59.718][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:09:59.719][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.720][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:09:59.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:09:59.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:09:59.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:09:59.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.747][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:09:59.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:09:59.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.755][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:09:59.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:09:59.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.765][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:09:59.767][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:09:59.769][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.771][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.774][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:09:59.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:09:59.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:09:59.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:09:59.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.800][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:09:59.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:09:59.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:09:59.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:09:59.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.811][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:09:59.813][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:09:59.815][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.817][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:09:59.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:09:59.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.838][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:09:59.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:59.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.846][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:09:59.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:59.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.852][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:09:59.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:59.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.857][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:09:59.858][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:59.859][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.860][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.861][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:09:59.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:09:59.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.877][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:09:59.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:09:59.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.882][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:09:59.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:09:59.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:09:59.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:09:59.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.891][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:09:59.892][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:09:59.894][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.895][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.896][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:09:59.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:09:59.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.911][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:09:59.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:09:59.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.916][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:09:59.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:09:59.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.921][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:09:59.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:09:59.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.926][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:09:59.927][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:09:59.928][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.929][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.930][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:09:59.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:09:59.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.945][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:09:59.947][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:09:59.948][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.949][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.956][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:09:59.958][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:09:59.959][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.960][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.967][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:09:59.969][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:09:59.970][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.971][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.985][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:09:59.986][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:09:59.987][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.988][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:09:59.996][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:09:59.997][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:09:59.998][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:09:59.999][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.006][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:00.008][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:00.009][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.010][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.018][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:00.019][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:00.020][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.021][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.028][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:00.030][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:00.031][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.032][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.039][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:00.040][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:00.042][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.043][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.050][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:00.051][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:00.053][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.054][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.061][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:00.062][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:00.064][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.065][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.072][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:00.073][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:00.075][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.076][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.083][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:00.085][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:00.086][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.087][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.094][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:00.096][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:00.097][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.098][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.106][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:00.107][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:00.108][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.109][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.118][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.17-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-65124-content.xml".
biodb.DEBUG[2023-10-14 11:10:00.120][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:10:00.121][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2023-10-14 11:10:00.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:00.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:00.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:00.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:00.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:00.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:00.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:00.139][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:00.140][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:00.141][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.143][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:00.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:00.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.149][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:00.150][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:00.151][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.153][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:00.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:00.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.159][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:00.160][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:00.162][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.163][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.164][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:00.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:00.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.169][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:00.171][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:00.172][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.173][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.175][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:00.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:00.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.179][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:00.181][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:00.182][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.183][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.184][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:00.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:00.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.189][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:00.191][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:00.192][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.193][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.195][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:00.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:00.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.199][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:00.201][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:00.202][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.203][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.205][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:00.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:00.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.209][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:00.211][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:00.212][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.213][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.215][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:00.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:00.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.219][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:00.221][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:00.222][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.223][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.224][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:00.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:00.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.229][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:00.231][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:00.232][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.233][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.234][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:00.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:00.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.239][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:00.241][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:00.242][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.243][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.244][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:00.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:00.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.250][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:00.251][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:00.252][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.254][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:00.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:00.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.261][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:00.262][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:00.264][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.266][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.268][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:00.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:00.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.273][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:00.274][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:00.276][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.277][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.278][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:00.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:00.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.283][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-10-14 11:10:00.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:00.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:00.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:00.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.293][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:00.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:00.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.298][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-10-14 11:10:00.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:00.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.303][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:00.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:00.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.307][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:00.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:00.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.312][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-10-14 11:10:00.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:00.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.317][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:00.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:00.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.322][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:00.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:00.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.327][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-10-14 11:10:00.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:00.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.332][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:00.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:00.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.337][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:00.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:00.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.342][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-10-14 11:10:00.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:00.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.347][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:00.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:00.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.351][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:00.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:00.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.356][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:00.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:00.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.363][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:00.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:00.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.368][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:00.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:00.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:00.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:00.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.378][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:00.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:00.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:00.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:00.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:00.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:00.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:00.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:00.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:00.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:00.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:00.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:00.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:00.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:00.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:00.430][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 65124.
biodb.TRACE[2023-10-14 11:10:00.433][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:10:00.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:10:00.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.439][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:10:00.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:10:00.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.446][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:10:00.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:10:00.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.452][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:10:00.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:10:00.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.459][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:10:00.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:10:00.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.464][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-10-14 11:10:00.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-10-14 11:10:00.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.469][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-10-14 11:10:00.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-10-14 11:10:00.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:00.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:00.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.487][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:00.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:00.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:00.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:00.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:00.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:00.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:00.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:00.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:00.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:00.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:00.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:00.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:00.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:00.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.532][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:00.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:00.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.537][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:00.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:00.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.542][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:00.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:00.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:00.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:00.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:00.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:00.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:00.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:00.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.575][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:00.576][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:00.577][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.579][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:00.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:00.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.596][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:00.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:00.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:00.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:00.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:00.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:00.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.613][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:00.614][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:00.615][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.616][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:00.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:00.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.634][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:00.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:00.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:00.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:00.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:00.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:00.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.654][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:00.656][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:00.659][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.661][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:00.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:00.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.691][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:00.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:00.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.701][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:00.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:00.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.711][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:00.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:00.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.721][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:00.723][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:00.725][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.727][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.730][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:00.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:00.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.757][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:00.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:00.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.763][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:00.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:00.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.768][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:00.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:00.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.774][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:00.775][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:00.776][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.778][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.779][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:00.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:00.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.796][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:00.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:00.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.801][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:00.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:00.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.807][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:00.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:00.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.812][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:00.814][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:00.815][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.816][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.817][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:00.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:00.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.836][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:00.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:00.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.843][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:00.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:00.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.849][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:00.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:00.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.854][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:00.856][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:00.857][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.858][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.860][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:00.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:00.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.876][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:00.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:00.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.882][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:00.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:00.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.894][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:00.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:00.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.899][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:00.901][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:00.902][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.903][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.905][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:00.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:00.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.926][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:00.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:00.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.933][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:00.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:00.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:00.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:00.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.947][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:00.949][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:00.951][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.953][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:00.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:00.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.971][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:00.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:00.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.979][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:00.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:00.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.986][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:00.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:00.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.991][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:00.993][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:00.994][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:00.995][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:00.997][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:00.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:00.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:01.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:01.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.019][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:01.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:01.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:01.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:01.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.030][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:01.032][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:01.033][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.034][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.036][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:01.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:01.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:01.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:01.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.061][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:01.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:01.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:01.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:01.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.079][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:01.081][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:01.083][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.086][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.088][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:01.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:01.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:01.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:01.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.117][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:01.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:01.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:01.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:01.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.130][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:01.131][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:01.132][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.134][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:01.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:01.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:01.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:01.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:01.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:01.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.167][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:01.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:01.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.173][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:01.174][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:01.176][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.178][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:01.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:01.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.205][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:01.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:01.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.211][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:01.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:01.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.217][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:01.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:01.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.222][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:01.223][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:01.225][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.226][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.228][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:01.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:01.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.246][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:01.249][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:01.251][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.253][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.265][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:01.267][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:01.270][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.272][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.282][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:01.283][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:01.285][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.286][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.295][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:01.296][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:01.298][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.299][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.308][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:01.309][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:01.311][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.312][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.321][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:01.323][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:01.325][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.326][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.335][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:01.337][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:01.338][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.340][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.348][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:01.350][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:01.351][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.353][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.361][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:01.362][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:01.363][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.365][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.373][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:01.374][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:01.376][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.378][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.389][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:01.392][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:01.394][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.395][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.407][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:01.409][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:01.411][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.418][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.428][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:01.431][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:01.433][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.435][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.447][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:01.449][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:01.452][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.454][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.466][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:01.468][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:01.470][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.472][ef$get] fields variable is a list.
biodb.INFO [2023-10-14 11:10:01.494][biodb::testThat]
biodb.INFO [2023-10-14 11:10:01.496][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2023-10-14 11:10:01.498][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:10:01.500][biodb::testThat]
biodb.DEBUG[2023-10-14 11:10:01.505][private$loadEntries] Creating entries from ids [2]: "2, 65124".
biodb.DEBUG[2023-10-14 11:10:01.508][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2023-10-14 11:10:01.513][cch$loadFileContent] Trying to load 2 files from cache: [2]: "2, 65124".
biodb.TRACE[2023-10-14 11:10:01.515][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2023-10-14 11:10:01.536][loadFileContents] Loaded 2 files from cache: [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/65124.xml".
biodb.DEBUG[2023-10-14 11:10:01.538][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:10:01.540][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2023-10-14 11:10:01.541][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2023-10-14 11:10:01.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:01.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:01.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:01.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:01.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:01.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:01.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:01.561][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:01.562][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:01.563][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.564][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:01.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:01.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.571][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:01.572][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:01.573][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.575][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.576][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:01.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:01.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.581][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:01.583][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:01.584][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.585][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.587][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:01.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:01.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.592][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:01.593][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:01.594][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.596][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:01.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:01.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.602][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:01.604][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:01.605][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.606][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:01.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:01.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.613][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:01.614][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:01.616][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.617][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.619][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:01.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:01.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.624][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:01.625][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:01.626][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.627][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.629][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:01.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:01.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.634][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:01.636][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:01.637][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.638][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.640][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:01.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:01.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.645][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:01.646][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:01.648][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.649][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.651][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:01.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:01.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.656][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:01.657][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:01.658][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.659][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.661][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:01.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:01.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.666][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:01.668][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:01.669][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.670][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.672][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:01.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:01.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.677][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:01.678][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:01.679][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.680][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:01.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:01.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.688][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:01.689][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:01.690][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.691][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.693][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:01.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:01.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.698][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:01.699][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:01.701][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.702][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.704][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:01.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:01.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.709][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-10-14 11:10:01.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:01.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:01.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:01.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:01.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:01.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.724][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-10-14 11:10:01.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:01.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.731][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:01.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:01.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.737][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:01.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:01.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.742][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-10-14 11:10:01.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:01.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.751][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:01.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:01.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.757][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:01.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:01.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.763][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-10-14 11:10:01.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:01.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.770][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:01.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:01.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.776][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:01.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:01.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.781][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-10-14 11:10:01.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:01.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:01.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:01.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.791][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:01.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:01.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.796][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:01.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:01.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.803][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:01.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:01.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.808][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:01.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:01.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:01.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:01.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.824][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:01.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:01.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:01.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:01.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:01.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:01.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:01.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:01.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:01.845][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:01.846][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:01.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:01.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:01.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:01.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:01.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:01.864][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:01.865][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:01.867][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.868][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:01.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:01.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.875][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:01.876][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:01.878][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.879][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.881][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:01.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:01.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.886][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:01.887][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:01.888][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.890][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:01.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:01.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.897][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:01.898][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:01.899][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.901][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.903][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:01.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:01.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.911][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:01.912][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:01.913][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.914][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.916][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:01.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:01.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.941][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:01.942][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:01.944][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.945][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.947][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:01.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:01.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.952][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:01.954][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:01.955][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.956][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.958][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:01.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:01.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.964][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:01.967][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:01.969][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.972][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.974][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:01.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:01.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.983][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:01.984][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:01.986][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.989][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:01.992][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:01.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:01.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:01.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.000][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:02.001][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:02.003][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.004][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.007][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:02.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:02.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.014][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:02.015][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:02.016][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.017][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.019][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:02.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:02.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.024][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:02.026][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:02.027][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.028][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.030][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:02.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:02.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.035][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:02.036][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:02.037][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.038][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.040][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:02.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:02.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.045][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:02.047][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:02.048][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.049][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.051][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:02.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:02.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.056][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-10-14 11:10:02.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:02.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.061][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:02.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:02.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:02.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:02.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.073][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-10-14 11:10:02.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:02.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:02.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:02.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:02.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:02.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.088][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-10-14 11:10:02.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:02.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.094][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:02.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:02.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.099][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:02.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:02.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.104][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-10-14 11:10:02.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:02.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.112][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:02.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:02.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.117][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:02.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:02.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.122][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-10-14 11:10:02.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:02.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.127][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:02.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:02.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.132][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:02.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:02.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.138][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:02.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:02.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.143][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:02.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:02.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.148][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:02.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:02.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:02.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:02.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.160][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:02.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:02.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:02.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:02.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:02.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:02.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:02.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:02.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:02.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:02.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:02.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:02.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:02.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:02.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:02.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:02.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:02.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:02.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:02.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:02.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:02.214][self$createEntryFromContent] Accession numbers: 2, 65124.
biodb.TRACE[2023-10-14 11:10:02.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-10-14 11:10:02.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-10-14 11:10:02.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-10-14 11:10:02.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-10-14 11:10:02.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-10-14 11:10:02.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-10-14 11:10:02.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-10-14 11:10:02.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-10-14 11:10:02.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-10-14 11:10:02.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-10-14 11:10:02.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-10-14 11:10:02.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-10-14 11:10:02.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-10-14 11:10:02.268][biodb::testThat]
biodb.INFO [2023-10-14 11:10:02.271][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2023-10-14 11:10:02.273][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:10:02.275][biodb::testThat]
biodb.TRACE[2023-10-14 11:10:02.279][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:02.281][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:02.282][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.283][ef$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:02.285][function(conn, opt)] Testing searchForEntries() with entry "2" and field "name".
biodb.TRACE[2023-10-14 11:10:02.307][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:02.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:02.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.312][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:02.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:02.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.317][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:02.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:02.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:02.325][function(conn, opt)] With value "(2-acetyloxy-3-carboxypropyl)-trimethylazanium".
biodb.DEBUG[2023-10-14 11:10:02.361][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2023-10-14 11:10:02.367][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:02.387][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2023-10-14 11:10:02.390][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:02.400][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2023-10-14 11:10:02.402][function(conn, opt)] With found IDs [5]: "87229113, 25217148, 450343, 450342, 2".
biodb.TRACE[2023-10-14 11:10:02.422][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:02.423][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:02.425][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.426][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.427][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:02.428][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:02.430][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.431][ef$get] fields variable is a list.
biodb.INFO [2023-10-14 11:10:02.438][biodb::testThat]
biodb.INFO [2023-10-14 11:10:02.439][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2023-10-14 11:10:02.441][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:10:02.442][biodb::testThat]
biodb.TRACE[2023-10-14 11:10:02.459][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:02.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:02.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.465][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:02.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:02.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.470][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:02.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:02.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:02.514][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2023-10-14 11:10:02.518][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:02.520][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2023-10-14 11:10:02.522][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:02.524][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.INFO [2023-10-14 11:10:02.554][biodb::testThat]
biodb.INFO [2023-10-14 11:10:02.556][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2023-10-14 11:10:02.557][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:10:02.558][biodb::testThat]
biodb.TRACE[2023-10-14 11:10:02.574][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:10:02.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:10:02.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.580][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:10:02.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:10:02.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.585][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:10:02.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:10:02.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.590][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:10:02.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:10:02.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.595][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:10:02.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:10:02.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.600][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-10-14 11:10:02.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-10-14 11:10:02.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.604][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-10-14 11:10:02.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-10-14 11:10:02.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.611][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:10:02.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:10:02.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.616][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:10:02.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:10:02.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.621][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:10:02.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:10:02.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.626][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:10:02.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:10:02.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.631][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:10:02.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:10:02.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.637][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-10-14 11:10:02.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-10-14 11:10:02.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:02.645][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-10-14 11:10:02.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-10-14 11:10:02.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:02.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-10-14 11:10:02.659][biodb::testThat]
biodb.INFO [2023-10-14 11:10:02.660][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2023-10-14 11:10:02.661][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:10:02.663][biodb::testThat]
biodb.INFO [2023-10-14 11:10:02.675][biodb::testThat]
biodb.INFO [2023-10-14 11:10:02.677][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2023-10-14 11:10:02.678][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:10:02.679][biodb::testThat]
biodb.INFO [2023-10-14 11:10:02.692][biodb::testThat]
biodb.INFO [2023-10-14 11:10:02.694][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2023-10-14 11:10:02.695][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:10:02.696][biodb::testThat]
biodb.DEBUG[2023-10-14 11:10:02.701][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/compound/2".
biodb.DEBUG[2023-10-14 11:10:02.793][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/compound/2.
biodb.INFO [2023-10-14 11:10:02.902][biodb::testThat]
biodb.INFO [2023-10-14 11:10:02.903][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2023-10-14 11:10:02.905][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:10:02.906][biodb::testThat]
biodb.DEBUG[2023-10-14 11:10:02.965][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?cid=2&t=l.
biodb.TRACE[2023-10-14 11:10:03.020][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:03.022][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:03.025][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:03.026][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:03.028][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:03.029][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:03.031][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:03.032][ef$get] fields variable is a list.
biodb.INFO [2023-10-14 11:10:03.035][biodb::testThat]
biodb.INFO [2023-10-14 11:10:03.036][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2023-10-14 11:10:03.037][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:10:03.039][biodb::testThat]
biodb.TRACE[2023-10-14 11:10:03.057][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:03.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:03.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:03.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:03.064][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:03.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:03.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:03.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:03.069][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:03.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:03.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:03.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:03.233][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2023-10-14 11:10:03.240][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:03.242][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2023-10-14 11:10:03.244][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:03.246][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2023-10-14 11:10:03.338][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2023-10-14 11:10:03.342][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:03.344][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2023-10-14 11:10:03.346][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:03.349][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.TRACE[2023-10-14 11:10:03.378][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-10-14 11:10:03.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-10-14 11:10:03.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:03.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:03.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:03.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:03.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:03.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:03.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:03.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:03.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:03.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:03.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:03.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:03.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:03.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:03.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:03.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:03.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:03.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:03.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:03.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:03.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:03.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:03.461][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:03.468][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:03.471][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2023-10-14 11:10:03.474][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:03.490][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2023-10-14 11:10:03.530][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2023-10-14 11:10:03.535][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:03.537][cch$loadFileContent] Trying to load 1 files from cache: [1]: "43af01c58cfaf2fe3448c11004a21986".
biodb.TRACE[2023-10-14 11:10:03.539][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:03.565][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/43af01c58cfaf2fe3448c11004a21986.content".
biodb.DEBUG[2023-10-14 11:10:04.027][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2023-10-14 11:10:04.033][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:04.036][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5a651e56a091cb06291b388106735d55".
biodb.TRACE[2023-10-14 11:10:04.039][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:04.055][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/5a651e56a091cb06291b388106735d55.content".
biodb.DEBUG[2023-10-14 11:10:04.107][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.27[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2023-10-14 11:10:04.113][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:04.116][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d3d0da2755d093596dae584b7698bc73".
biodb.TRACE[2023-10-14 11:10:04.119][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:04.135][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/d3d0da2755d093596dae584b7698bc73.content".
biodb.TRACE[2023-10-14 11:10:04.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:04.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:04.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:04.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:04.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.190][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:04.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:04.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:04.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:04.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:04.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:04.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:04.229][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:04.233][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:04.235][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1384af38a786fc6768cd7f1e796d96ab".
biodb.TRACE[2023-10-14 11:10:04.237][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:04.252][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1384af38a786fc6768cd7f1e796d96ab.content".
biodb.DEBUG[2023-10-14 11:10:04.289][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2023-10-14 11:10:04.293][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:04.295][cch$loadFileContent] Trying to load 1 files from cache: [1]: "983d3a3af3901d23b5d919d379c6bd32".
biodb.TRACE[2023-10-14 11:10:04.296][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:04.308][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/983d3a3af3901d23b5d919d379c6bd32.content".
biodb.DEBUG[2023-10-14 11:10:04.339][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2023-10-14 11:10:04.343][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:04.345][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9a9be2efcff8c77fef3b8a87f25b444".
biodb.TRACE[2023-10-14 11:10:04.346][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:04.361][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/b9a9be2efcff8c77fef3b8a87f25b444.content".
biodb.DEBUG[2023-10-14 11:10:04.412][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358309[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2023-10-14 11:10:04.417][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:04.419][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6d4e46c6f0a021fc6e92911d60537192".
biodb.TRACE[2023-10-14 11:10:04.421][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:04.425][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6d4e46c6f0a021fc6e92911d60537192.content".
biodb.TRACE[2023-10-14 11:10:04.455][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-10-14 11:10:04.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-10-14 11:10:04.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-10-14 11:10:04.475][biodb::testThat]
biodb.INFO [2023-10-14 11:10:04.476][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2023-10-14 11:10:04.478][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:10:04.479][biodb::testThat]
biodb.TRACE[2023-10-14 11:10:04.484][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-10-14 11:10:04.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-10-14 11:10:04.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.490][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-10-14 11:10:04.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-10-14 11:10:04.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:04.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:04.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.500][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:04.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:04.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.505][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:04.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:04.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:04.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:04.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:04.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:04.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:04.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:04.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:04.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:04.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.542][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:04.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:04.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:04.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:04.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:04.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:04.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:04.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:04.565][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:04.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:04.607][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:04.611][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:04.613][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2023-10-14 11:10:04.615][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:04.617][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2023-10-14 11:10:04.619][private$loadEntries] Creating entries from ids [3]: "168534120, 168533548, 168531246".
biodb.DEBUG[2023-10-14 11:10:04.620][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2023-10-14 11:10:04.623][cch$loadFileContent] Trying to load 3 files from cache: [3]: "168534120, 168533548, 168531246".
biodb.TRACE[2023-10-14 11:10:04.625][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2023-10-14 11:10:04.719][loadFileContents] Loaded 3 files from cache: [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/168534120.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/168533548.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/168531246.xml".
biodb.DEBUG[2023-10-14 11:10:04.720][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:10:04.722][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2023-10-14 11:10:04.724][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2023-10-14 11:10:04.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:04.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:04.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:04.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:04.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:04.738][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:04.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:04.743][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:04.744][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:04.746][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.747][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:04.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:04.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.754][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:04.755][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:04.756][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.758][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.759][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:04.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:04.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.765][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:04.766][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:04.767][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.768][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.770][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:04.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:04.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.779][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:04.780][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:04.782][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.784][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:04.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:04.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.791][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:04.792][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:04.793][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.795][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.796][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:04.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:04.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.801][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:04.803][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:04.804][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.805][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.807][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:04.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:04.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.812][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:04.813][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:04.814][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.816][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.818][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:04.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:04.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.823][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:04.824][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:04.826][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.827][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.828][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:04.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:04.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.833][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:04.835][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:04.836][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.837][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:04.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:04.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.844][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:04.845][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:04.846][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.848][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:04.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:04.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.854][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:04.856][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:04.857][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.858][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.860][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:04.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:04.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.865][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:04.866][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:04.867][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.868][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:04.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:04.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.875][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:04.876][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:04.878][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.879][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.880][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:04.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:04.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.886][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:04.887][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:04.888][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.889][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.891][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:04.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:04.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.896][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-10-14 11:10:04.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:04.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:04.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:04.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:04.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:04.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.911][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-10-14 11:10:04.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:04.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.916][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:04.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:04.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:04.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:04.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.926][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-10-14 11:10:04.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:04.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:04.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:04.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.936][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:04.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:04.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.941][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-10-14 11:10:04.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:04.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.946][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:04.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:04.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.951][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:04.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:04.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.956][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-10-14 11:10:04.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:04.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.961][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:04.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:04.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.966][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:04.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:04.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.971][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:04.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:04.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.976][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:04.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:04.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.981][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:04.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:04.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:04.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:04.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.991][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:04.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:04.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:04.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:04.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:04.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:04.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:05.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:05.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:05.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:05.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:05.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:05.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:05.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:05.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:05.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:05.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:05.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:05.028][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:05.030][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:05.038][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.039][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:05.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:05.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.047][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:05.048][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:05.049][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.051][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.052][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:05.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:05.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.057][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:05.059][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:05.060][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.061][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:05.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:05.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.068][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:05.069][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:05.070][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.072][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.073][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:05.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:05.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.079][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:05.080][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:05.081][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.082][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.084][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:05.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:05.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.089][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:05.090][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:05.091][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.092][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.094][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:05.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:05.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.100][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:05.101][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:05.102][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.103][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.105][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:05.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:05.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.110][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:05.111][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:05.112][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.113][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.115][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:05.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:05.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.121][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:05.123][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:05.125][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.126][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.128][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:05.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:05.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.133][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:05.135][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:05.136][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.137][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.139][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:05.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:05.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.144][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:05.145][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:05.146][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.148][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.149][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:05.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:05.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.155][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:05.156][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:05.157][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.158][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:05.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:05.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.165][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:05.166][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:05.168][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.169][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.171][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:05.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:05.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.176][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:05.177][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:05.178][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.180][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.181][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:05.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:05.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.187][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-10-14 11:10:05.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:05.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.192][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:05.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:05.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.197][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:05.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:05.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.202][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-10-14 11:10:05.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:05.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.207][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:05.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:05.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:05.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:05.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.217][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-10-14 11:10:05.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:05.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:05.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:05.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.227][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:05.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:05.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.232][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-10-14 11:10:05.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:05.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.237][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:05.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:05.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.242][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:05.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:05.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.247][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-10-14 11:10:05.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:05.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:05.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:05.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.258][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:05.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:05.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.263][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:05.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:05.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.268][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.273][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:05.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:05.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.283][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:05.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:05.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:05.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:05.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:05.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:05.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:05.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:05.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:05.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:05.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:05.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:05.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:05.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:05.324][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:05.326][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:05.327][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.328][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:05.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:05.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.335][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:05.336][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:05.338][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.339][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.341][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:05.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:05.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.346][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:05.347][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:05.348][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.349][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.351][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:05.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:05.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.356][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:05.357][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:05.359][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.360][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.361][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:05.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:05.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.366][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:05.368][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:05.369][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.370][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.372][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:05.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:05.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.377][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:05.379][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:05.380][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.381][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:05.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:05.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.388][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:05.389][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:05.390][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.391][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.393][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:05.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:05.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.398][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:05.400][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:05.401][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.402][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.404][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:05.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:05.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.409][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:05.411][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:05.412][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.414][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.415][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:05.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:05.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.421][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:05.422][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:05.423][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.424][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.426][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:05.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:05.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.431][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:05.433][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:05.434][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.435][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.437][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:05.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:05.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.442][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:05.443][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:05.444][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.445][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:05.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:05.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.459][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:05.461][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:05.462][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.464][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.465][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:05.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:05.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.471][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:05.472][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:05.473][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.474][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.476][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:05.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:05.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.481][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-10-14 11:10:05.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:05.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.486][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:05.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:05.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.491][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:05.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:05.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.496][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-10-14 11:10:05.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:05.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.501][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:05.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:05.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.506][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:05.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:05.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.511][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-10-14 11:10:05.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:05.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.516][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:05.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:05.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:05.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:05.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.527][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-10-14 11:10:05.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:05.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:05.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:05.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:05.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:05.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.542][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-10-14 11:10:05.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:05.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.547][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:05.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:05.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.552][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:05.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:05.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.557][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:05.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:05.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.562][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.568][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:05.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:05.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.578][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:05.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:05.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:05.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:05.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:05.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:05.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:05.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:05.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:05.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:05.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:05.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:05.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:05.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:05.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:05.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:05.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:05.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:05.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:05.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:05.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:05.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:05.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:05.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:05.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:05.648][self$createEntryFromContent] Accession numbers: 168534120, 168533548, 168531246.
biodb.DEBUG[2023-10-14 11:10:05.649][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:05.651][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:05.652][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:05.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:05.661][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:05.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:05.663][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:05.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:05.666][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.671][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.676][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:05.677][private$selectFields]
biodb.TRACE[2023-10-14 11:10:05.678][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:05.679][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:05.681][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:05.682][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.683][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.684][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.686][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.687][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.688][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.689][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.690][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.692][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:05.693][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:05.694][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.695][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.697][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.698][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.699][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:05.700][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.706][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.711][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.724][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168534120].
biodb.DEBUG[2023-10-14 11:10:05.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:05.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:05.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:05.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:05.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:05.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:05.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:05.742][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.747][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.752][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:05.754][private$selectFields]
biodb.TRACE[2023-10-14 11:10:05.756][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:05.758][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:05.760][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:05.762][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.764][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.765][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.766][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.768][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.769][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.770][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.772][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.773][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:05.774][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:05.776][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.777][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.778][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.779][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.781][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:05.782][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.787][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.792][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.798][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168533548].
biodb.DEBUG[2023-10-14 11:10:05.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:05.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:05.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:05.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:05.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:05.813][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:05.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:05.816][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.821][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.826][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:05.827][private$selectFields]
biodb.TRACE[2023-10-14 11:10:05.829][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:05.830][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:05.831][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:05.832][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.834][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.835][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.836][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.837][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.838][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.840][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.841][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.842][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:05.843][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:05.844][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.846][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.847][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.848][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.849][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:05.851][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.856][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.861][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:05.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:05.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:05.873][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168531246].
biodb.DEBUG[2023-10-14 11:10:05.875][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:05.877][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:10:05.880][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:05.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:05.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:05.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:05.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:05.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:05.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:05.930][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:06.065][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:10:06.067][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:10:06.069][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2023-10-14 11:10:06.115][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2023-10-14 11:10:06.116][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-10-14 11:10:06.118][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-10-14 11:10:06.119][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2023-10-14 11:10:06.162][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:10:06.165][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content"
biodb.TRACE[2023-10-14 11:10:06.170][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.request"
biodb.DEBUG[2023-10-14 11:10:06.174][private$loadEntries] Creating entries from ids [3]: "168651635, 168609923, 168608633".
biodb.DEBUG[2023-10-14 11:10:06.175][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2023-10-14 11:10:06.177][cch$loadFileContent] Trying to load 3 files from cache: [3]: "168651635, 168609923, 168608633".
biodb.TRACE[2023-10-14 11:10:06.314][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2023-10-14 11:10:06.317][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:10:06.319][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:10:06.321][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-10-14 11:10:06.322][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:10:06.324][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2023-10-14 11:10:06.325][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2023-10-14 11:10:06.328][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/168651635,168609923,168608633/XML".
biodb.DEBUG[2023-10-14 11:10:06.330][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:10:06.332][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:10:06.333][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/168651635,168609923,168608633/XML".
biodb.TRACE[2023-10-14 11:10:06.435][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/168651635,168609923,168608633/XML).
biodb.TRACE[2023-10-14 11:10:06.634][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/168651635.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/168609923.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/168608633.xml"
biodb.DEBUG[2023-10-14 11:10:06.640][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:10:06.642][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2023-10-14 11:10:06.644][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2023-10-14 11:10:06.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:06.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:06.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:06.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:06.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:06.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:06.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:06.666][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:06.668][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:06.669][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.670][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:06.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:06.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.680][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:06.682][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:06.683][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.684][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.686][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:06.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:06.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.692][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:06.693][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:06.694][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.696][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.698][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:06.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:06.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.704][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:06.706][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:06.708][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.709][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:06.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:06.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.718][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:06.719][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:06.720][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.722][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:06.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:06.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.735][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:06.737][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:06.738][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.740][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:06.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:06.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.749][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:06.751][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:06.752][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.754][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.755][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:06.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:06.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.761][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:06.762][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:06.763][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.765][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.767][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:06.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:06.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.773][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:06.775][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:06.776][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.777][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.779][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:06.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:06.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.784][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:06.786][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:06.788][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.790][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.792][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:06.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:06.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.799][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:06.800][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:06.806][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.807][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.810][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:06.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:06.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.818][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:06.820][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:06.822][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.823][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:06.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:06.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.831][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:06.832][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:06.833][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.835][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.836][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:06.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:06.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.842][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:06.843][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:06.845][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.846][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.849][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:06.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:06.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.857][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-10-14 11:10:06.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:06.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:06.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:06.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.869][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:06.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:06.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.875][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-10-14 11:10:06.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:06.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:06.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:06.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:06.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:06.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.893][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-10-14 11:10:06.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:06.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.900][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:06.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:06.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:06.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:06.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.915][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-10-14 11:10:06.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:06.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:06.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:06.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.928][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:06.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:06.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.933][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-10-14 11:10:06.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:06.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.938][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:06.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:06.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.943][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:06.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:06.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.949][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:06.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:06.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.954][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:06.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:06.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.959][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:06.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:06.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:06.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:06.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.969][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:06.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:06.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:06.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:06.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:06.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:06.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:06.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:06.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:06.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:06.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:06.999][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:07.000][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:07.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:07.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:07.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:07.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:07.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:07.018][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:07.019][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:07.020][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.022][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:07.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:07.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.029][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:07.030][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:07.031][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.033][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.034][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:07.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:07.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.040][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:07.041][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:07.042][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.043][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.045][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:07.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:07.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.050][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:07.051][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:07.053][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.054][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.055][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:07.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:07.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.061][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:07.062][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:07.063][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.064][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.066][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:07.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:07.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.071][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:07.073][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:07.074][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.075][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.077][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:07.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:07.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.082][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:07.084][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:07.085][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.086][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.088][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:07.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:07.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.093][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:07.094][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:07.096][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.097][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.099][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:07.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:07.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.104][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:07.105][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:07.106][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.108][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.109][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:07.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:07.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.116][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:07.117][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:07.118][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.119][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.121][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:07.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:07.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.129][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:07.131][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:07.133][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.134][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.136][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:07.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:07.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.142][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:07.143][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:07.144][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.145][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:07.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:07.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.152][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:07.154][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:07.155][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.156][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.158][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:07.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:07.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.163][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:07.165][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:07.166][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.167][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.169][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:07.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:07.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.174][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-10-14 11:10:07.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:07.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:07.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:07.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.184][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:07.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:07.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.189][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-10-14 11:10:07.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:07.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.194][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:07.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:07.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:07.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:07.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.205][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-10-14 11:10:07.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:07.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.210][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:07.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:07.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:07.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:07.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.220][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-10-14 11:10:07.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:07.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.225][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:07.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:07.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:07.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:07.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.235][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-10-14 11:10:07.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:07.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:07.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:07.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.246][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:07.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:07.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.251][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:07.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:07.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.257][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.263][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:07.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:07.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.276][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:07.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:07.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:07.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:07.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:07.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:07.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:07.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:07.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:07.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:07.307][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:07.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:07.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:07.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:07.314][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:07.316][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:07.317][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.318][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:07.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:07.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.325][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:07.327][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:07.328][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.329][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.332][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:07.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:07.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.338][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:07.339][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:07.340][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.341][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.343][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:07.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:07.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.349][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:07.350][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:07.351][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.352][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.354][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:07.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:07.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.360][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:07.362][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:07.363][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.364][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.366][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:07.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:07.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.373][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:07.374][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:07.375][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.377][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.378][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:07.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:07.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.384][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:07.385][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:07.387][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.388][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.389][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:07.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:07.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.395][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:07.396][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:07.397][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.399][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.401][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:07.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:07.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.407][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:07.408][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:07.410][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.411][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.412][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:07.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:07.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.418][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:07.419][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:07.421][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.422][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:07.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:07.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.436][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:07.438][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:07.440][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.441][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.443][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:07.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:07.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.448][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:07.450][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:07.451][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.452][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:07.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:07.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.460][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:07.461][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:07.463][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.464][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.465][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:07.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:07.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.471][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:07.472][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:07.473][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.475][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.477][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:07.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:07.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.482][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-10-14 11:10:07.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:07.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.487][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:07.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:07.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:07.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:07.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.497][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-10-14 11:10:07.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:07.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.502][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:07.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:07.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:07.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:07.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.515][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-10-14 11:10:07.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:07.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.520][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:07.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:07.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:07.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:07.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.535][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-10-14 11:10:07.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:07.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.541][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:07.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:07.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.546][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:07.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:07.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.551][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-10-14 11:10:07.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:07.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:07.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:07.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:07.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:07.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.567][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:07.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:07.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.572][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.577][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:07.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:07.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.588][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:07.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:07.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:07.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:07.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:07.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:07.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:07.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:07.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:07.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:07.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:07.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:07.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:07.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:07.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:07.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:07.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:07.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:07.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:07.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:07.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:07.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:07.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:07.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:07.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:07.654][self$createEntryFromContent] Accession numbers: 168651635, 168609923, 168608633.
biodb.DEBUG[2023-10-14 11:10:07.676][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:07.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:07.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:07.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:07.709][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:07.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:07.711][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:07.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:07.714][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.719][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.724][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:07.725][private$selectFields]
biodb.TRACE[2023-10-14 11:10:07.726][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:07.727][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:07.729][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:07.730][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.731][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.732][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.734][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.735][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.736][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.737][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.739][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.740][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:07.741][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:07.742][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.744][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.745][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.746][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.747][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:07.749][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.754][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.759][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.764][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168651635].
biodb.DEBUG[2023-10-14 11:10:07.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:07.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:07.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:07.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:07.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:07.778][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:07.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:07.781][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.786][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.791][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:07.793][private$selectFields]
biodb.TRACE[2023-10-14 11:10:07.794][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:07.795][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:07.796][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:07.798][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.799][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.801][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.802][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.803][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.805][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.806][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.807][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.808][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:07.810][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:07.811][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.812][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.814][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.821][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.823][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:07.825][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.830][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.835][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.840][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168609923].
biodb.DEBUG[2023-10-14 11:10:07.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:07.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:07.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:07.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:07.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:07.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:07.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:07.857][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.862][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.867][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:07.868][private$selectFields]
biodb.TRACE[2023-10-14 11:10:07.869][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:07.871][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:07.872][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:07.873][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.874][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.876][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.877][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.878][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.879][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.881][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.882][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.883][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:07.884][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:07.885][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.887][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.888][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.890][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.891][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:07.892][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.897][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.903][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:07.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.908][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168608633].
biodb.DEBUG[2023-10-14 11:10:07.909][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:07.910][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-10-14 11:10:07.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:07.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:07.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.928][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:07.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:07.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:07.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:07.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:07.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:07.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:07.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:07.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:07.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:07.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:07.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:07.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:07.959][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:07.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:07.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:07.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:08.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:08.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:08.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:08.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:08.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:08.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:08.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:08.066][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:08.072][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:08.075][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2023-10-14 11:10:08.078][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:08.088][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2023-10-14 11:10:08.091][private$loadEntries] Creating entries from ids [3]: "168654156, 168653588, 168651976".
biodb.DEBUG[2023-10-14 11:10:08.092][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2023-10-14 11:10:08.095][cch$loadFileContent] Trying to load 3 files from cache: [3]: "168654156, 168653588, 168651976".
biodb.TRACE[2023-10-14 11:10:08.097][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2023-10-14 11:10:08.128][loadFileContents] Loaded 3 files from cache: [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/168654156.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/168653588.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/168651976.xml".
biodb.DEBUG[2023-10-14 11:10:08.130][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:10:08.132][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2023-10-14 11:10:08.134][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2023-10-14 11:10:08.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:08.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:08.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:08.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:08.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:08.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:08.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:08.154][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:08.156][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:08.157][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.158][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:08.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:08.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.165][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:08.167][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:08.168][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.169][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:08.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:08.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.178][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:08.180][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:08.181][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.182][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.184][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:08.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:08.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.190][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:08.191][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:08.193][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.195][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.198][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:08.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:08.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.203][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:08.205][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:08.206][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.207][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.209][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:08.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:08.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.216][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:08.217][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:08.218][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.219][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.221][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:08.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:08.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.227][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:08.228][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:08.230][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.231][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.232][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:08.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:08.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.238][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:08.239][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:08.248][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.250][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.252][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:08.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:08.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.257][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:08.259][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:08.260][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.261][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:08.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:08.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.268][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:08.270][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:08.272][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.274][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.276][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:08.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:08.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.282][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:08.283][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:08.285][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.287][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.289][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:08.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:08.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.294][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:08.295][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:08.296][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.298][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:08.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:08.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.305][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:08.306][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:08.307][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.308][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.310][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:08.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:08.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.315][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:08.316][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:08.317][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.319][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.320][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:08.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:08.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.325][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-10-14 11:10:08.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:08.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:08.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:08.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.335][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:08.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:08.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.340][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-10-14 11:10:08.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:08.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:08.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:08.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:08.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:08.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.355][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-10-14 11:10:08.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:08.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:08.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:08.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:08.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:08.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.371][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-10-14 11:10:08.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:08.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.375][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:08.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:08.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.381][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:08.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:08.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.386][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-10-14 11:10:08.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:08.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.391][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:08.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:08.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.396][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:08.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:08.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.401][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:08.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:08.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.406][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:08.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:08.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.411][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:08.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:08.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:08.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:08.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.422][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:08.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:08.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:08.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:08.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:08.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:08.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:08.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:08.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:08.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:08.447][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:08.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:08.456][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:08.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:08.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:08.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:08.464][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:08.465][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:08.466][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.467][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:08.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:08.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.474][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:08.475][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:08.477][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.478][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:08.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:08.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.485][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:08.486][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:08.487][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.488][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.490][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:08.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:08.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.495][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:08.497][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:08.498][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.499][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.500][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:08.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:08.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.506][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:08.507][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:08.508][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.509][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:08.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:08.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.516][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:08.517][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:08.519][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.520][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:08.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:08.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.527][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:08.529][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:08.530][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.531][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.533][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:08.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:08.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.539][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:08.540][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:08.542][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.543][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.545][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:08.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:08.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.550][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:08.551][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:08.553][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.554][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.556][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:08.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:08.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.562][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:08.563][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:08.564][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.566][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.567][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:08.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:08.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.573][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:08.574][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:08.575][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.577][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.578][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:08.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:08.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.585][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:08.587][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:08.588][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.589][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:08.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:08.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.596][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:08.598][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:08.599][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.601][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.602][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:08.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:08.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.608][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:08.609][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:08.610][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.612][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.614][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:08.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:08.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.619][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-10-14 11:10:08.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:08.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.625][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:08.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:08.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:08.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:08.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.635][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-10-14 11:10:08.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:08.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.640][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:08.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:08.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.645][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:08.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:08.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.650][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-10-14 11:10:08.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:08.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.655][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:08.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:08.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:08.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:08.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.667][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-10-14 11:10:08.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:08.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.680][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:08.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:08.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.686][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:08.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:08.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.691][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-10-14 11:10:08.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:08.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:08.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:08.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.701][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:08.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:08.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.707][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:08.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:08.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.712][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:08.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:08.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.718][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:08.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:08.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:08.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:08.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.732][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:08.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:08.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:08.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:08.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:08.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:08.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:08.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:08.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:08.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:08.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:08.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:08.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:08.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:08.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:08.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:08.776][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:08.778][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:08.779][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.780][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:08.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:08.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.787][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:08.788][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:08.789][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.790][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.792][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:08.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:08.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.797][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:08.798][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:08.800][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.801][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.803][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:08.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:08.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.808][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:08.810][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:08.811][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.812][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:08.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:08.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.819][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:08.820][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:08.822][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.823][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:08.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:08.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.830][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:08.831][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:08.832][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.833][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:08.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:08.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.840][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:08.842][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:08.843][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.844][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.846][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:08.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:08.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.851][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:08.852][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:08.853][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.854][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.856][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:08.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:08.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.861][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:08.863][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:08.864][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.865][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.867][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:08.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:08.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.872][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:08.874][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:08.875][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.876][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.878][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:08.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:08.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.883][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:08.884][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:08.886][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.887][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.888][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:08.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:08.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.893][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:08.895][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:08.897][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.898][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:08.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:08.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.905][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:08.906][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:08.907][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.908][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.910][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:08.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:08.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.915][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:08.917][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:08.918][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.919][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.921][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:08.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:08.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.927][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-10-14 11:10:08.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:08.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.933][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:08.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:08.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.938][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:08.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:08.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.943][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-10-14 11:10:08.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:08.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.948][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:08.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:08.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.954][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:08.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:08.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.961][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-10-14 11:10:08.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:08.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.967][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:08.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:08.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:08.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:08.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.977][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-10-14 11:10:08.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:08.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.982][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:08.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:08.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:08.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:08.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.992][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-10-14 11:10:08.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:08.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:08.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:08.997][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:08.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:08.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:09.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:09.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.008][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:09.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:09.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.017][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.025][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:09.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:09.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.035][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:09.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:09.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:09.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:09.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:09.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:09.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:09.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:09.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:09.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:09.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:09.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:09.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:09.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:09.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:09.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:09.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:09.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:09.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:09.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:09.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:09.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:09.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:09.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:09.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:09.103][self$createEntryFromContent] Accession numbers: 168654156, 168653588, 168651976.
biodb.DEBUG[2023-10-14 11:10:09.104][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:09.113][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:09.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:09.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:09.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:09.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:09.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:09.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:09.130][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.140][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:09.141][private$selectFields]
biodb.TRACE[2023-10-14 11:10:09.142][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:09.143][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:09.144][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:09.146][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.147][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.148][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.150][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.151][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.152][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.153][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.155][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.156][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:09.157][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:09.158][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.160][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.161][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.162][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.163][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:09.165][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.170][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.175][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.180][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168654156].
biodb.DEBUG[2023-10-14 11:10:09.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:09.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:09.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:09.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:09.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:09.194][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:09.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:09.197][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.202][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.207][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:09.208][private$selectFields]
biodb.TRACE[2023-10-14 11:10:09.209][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:09.210][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:09.212][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:09.213][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.214][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.215][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.217][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.218][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.219][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.221][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.222][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.223][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:09.224][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:09.225][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.227][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.228][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.229][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.230][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:09.232][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.237][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.242][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.248][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168653588].
biodb.DEBUG[2023-10-14 11:10:09.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:09.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:09.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:09.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:09.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:09.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:09.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:09.265][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.270][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.275][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:09.276][private$selectFields]
biodb.TRACE[2023-10-14 11:10:09.277][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:09.279][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:09.280][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:09.281][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.282][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.284][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.285][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.286][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.287][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.289][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.290][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.291][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:09.292][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:09.294][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.295][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.296][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.297][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.299][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:09.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.305][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.311][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.316][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168651976].
biodb.DEBUG[2023-10-14 11:10:09.318][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:09.319][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:10:09.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:09.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:09.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:09.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:09.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:09.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:09.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:09.372][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:09.375][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:10:09.377][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:10:09.379][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2023-10-14 11:10:09.425][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2023-10-14 11:10:09.427][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-10-14 11:10:09.428][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-10-14 11:10:09.430][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2023-10-14 11:10:09.481][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:10:09.484][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content"
biodb.TRACE[2023-10-14 11:10:09.490][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.request"
biodb.DEBUG[2023-10-14 11:10:09.493][private$loadEntries] Creating entries from ids [2]: "168654162, 168652975".
biodb.DEBUG[2023-10-14 11:10:09.494][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2023-10-14 11:10:09.496][cch$loadFileContent] Trying to load 2 files from cache: [2]: "168654162, 168652975".
biodb.TRACE[2023-10-14 11:10:09.498][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2023-10-14 11:10:09.500][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:10:09.501][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:10:09.502][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-10-14 11:10:09.504][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:10:09.505][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2023-10-14 11:10:09.520][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2023-10-14 11:10:09.523][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/168654162,168652975/XML".
biodb.DEBUG[2023-10-14 11:10:09.525][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:10:09.527][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:10:09.528][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/168654162,168652975/XML".
biodb.TRACE[2023-10-14 11:10:09.617][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/168654162,168652975/XML).
biodb.TRACE[2023-10-14 11:10:09.714][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/168654162.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/168652975.xml"
biodb.DEBUG[2023-10-14 11:10:09.719][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:10:09.721][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2023-10-14 11:10:09.722][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2023-10-14 11:10:09.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:09.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:09.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:09.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:09.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:09.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:09.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:09.741][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:09.743][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:09.744][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.745][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:09.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:09.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.752][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:09.753][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:09.755][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.756][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.757][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:09.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:09.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.762][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:09.764][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:09.765][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.766][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:09.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:09.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.773][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:09.774][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:09.782][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.785][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.787][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:09.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:09.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.793][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:09.794][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:09.795][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.797][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.799][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:09.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:09.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.804][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:09.806][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:09.807][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.808][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.810][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:09.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:09.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.815][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:09.816][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:09.817][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.818][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.820][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:09.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:09.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.825][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:09.826][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:09.828][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.829][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.831][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:09.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:09.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.836][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:09.837][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:09.838][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.839][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.841][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:09.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:09.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.846][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:09.848][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:09.849][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.850][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.852][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:09.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:09.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.857][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:09.858][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:09.860][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.861][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.862][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:09.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:09.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.868][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:09.869][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:09.870][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.871][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:09.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:09.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.878][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:09.880][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:09.881][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.882][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.884][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:09.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:09.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.889][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:09.890][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:09.892][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.893][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.895][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:09.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:09.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.900][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-10-14 11:10:09.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:09.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.905][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:09.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:09.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.910][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:09.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:09.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.915][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-10-14 11:10:09.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:09.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:09.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:09.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:09.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:09.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.931][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-10-14 11:10:09.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:09.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.936][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:09.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:09.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.941][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:09.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:09.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.946][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-10-14 11:10:09.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:09.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.951][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:09.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:09.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.956][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:09.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:09.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.961][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-10-14 11:10:09.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:09.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.967][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:09.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:09.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:09.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:09.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.977][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:09.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:09.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.984][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.989][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:09.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:09.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:09.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:09.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:09.999][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:10.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:10.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:10.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:10.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:10.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:10.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:10.019][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:10.020][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:10.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:10.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:10.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:10.032][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:10.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:10.037][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:10.038][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:10.040][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.041][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:10.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:10.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.048][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:10.049][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:10.050][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.052][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.053][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:10.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:10.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.060][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:10.061][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:10.062][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.063][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.065][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:10.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:10.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.071][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:10.072][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:10.074][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.075][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.076][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:10.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:10.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.082][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:10.083][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:10.084][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.085][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:10.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:10.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.092][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:10.093][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:10.095][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.096][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:10.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:10.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.107][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:10.109][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:10.111][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.112][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.114][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:10.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:10.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.119][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:10.120][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:10.121][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.122][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.124][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:10.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:10.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.129][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:10.131][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:10.132][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.133][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:10.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:10.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.139][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:10.141][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:10.142][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.143][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.145][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:10.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:10.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.150][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:10.151][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:10.152][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.153][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.155][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:10.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:10.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.160][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:10.161][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:10.163][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.164][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:10.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:10.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.170][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:10.172][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:10.173][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.174][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.176][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:10.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:10.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.181][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:10.182][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:10.183][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.184][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.186][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:10.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:10.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.191][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-10-14 11:10:10.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:10.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.196][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:10.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:10.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.209][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:10.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:10.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.214][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-10-14 11:10:10.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:10.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.219][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:10.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:10.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.224][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:10.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:10.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.229][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-10-14 11:10:10.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:10.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.234][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:10.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:10.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.245][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:10.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:10.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.250][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-10-14 11:10:10.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:10.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.255][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:10.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:10.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:10.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:10.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.265][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-10-14 11:10:10.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:10.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:10.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:10.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.275][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:10.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:10.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.280][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:10.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:10.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.285][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.290][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:10.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:10.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:10.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:10.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:10.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:10.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:10.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:10.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:10.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:10.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:10.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:10.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:10.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:10.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:10.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:10.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:10.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:10.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:10.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:10.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:10.351][self$createEntryFromContent] Accession numbers: 168654162, 168652975.
biodb.DEBUG[2023-10-14 11:10:10.352][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:10.354][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:10.355][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:10.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:10.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:10.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:10.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:10.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:10.369][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.374][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.379][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:10.380][private$selectFields]
biodb.TRACE[2023-10-14 11:10:10.382][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:10.383][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:10.384][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:10.385][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.387][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.388][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.389][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.390][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.391][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.393][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.394][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.395][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:10.396][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:10.398][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.399][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.400][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.401][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.402][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:10.404][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.409][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.414][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.419][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168654162].
biodb.DEBUG[2023-10-14 11:10:10.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:10.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:10.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:10.431][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:10.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:10.433][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:10.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:10.436][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.441][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.446][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:10.447][private$selectFields]
biodb.TRACE[2023-10-14 11:10:10.448][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:10.449][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:10.450][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:10.452][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.453][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.454][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.455][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.457][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.458][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.459][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.460][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.462][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:10.463][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:10.464][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.465][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.467][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.468][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.469][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:10.470][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.475][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.480][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.486][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168652975].
biodb.DEBUG[2023-10-14 11:10:10.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:10.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:10.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:10.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:10.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:10.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:10.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:10.514][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.520][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.544][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:10.545][private$selectFields]
biodb.TRACE[2023-10-14 11:10:10.546][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:10.548][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:10.549][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:10.550][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.552][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.553][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.554][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.555][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.557][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.558][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.559][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.561][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:10.571][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:10.573][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.574][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.583][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.584][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.586][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:10.588][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.593][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.598][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:10.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.604][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168651635].
biodb.DEBUG[2023-10-14 11:10:10.605][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:10.606][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-10-14 11:10:10.618][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-10-14 11:10:10.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-10-14 11:10:10.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.624][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-10-14 11:10:10.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-10-14 11:10:10.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-10-14 11:10:10.636][biodb::testThat]
biodb.INFO [2023-10-14 11:10:10.637][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2023-10-14 11:10:10.639][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:10:10.640][biodb::testThat]
biodb.TRACE[2023-10-14 11:10:10.645][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-10-14 11:10:10.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-10-14 11:10:10.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.650][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-10-14 11:10:10.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-10-14 11:10:10.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:10.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:10.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:10.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:10.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:10.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:10.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:10.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:10.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:10.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:10.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:10.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:10.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:10.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:10.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:10.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:10.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:10.702][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:10.704][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:10.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:10.714][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:10.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:10.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:10.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:10.758][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364:204.2430636[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:10.762][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:10.764][cch$loadFileContent] Trying to load 1 files from cache: [1]: "aa9cb23a1eb4b2596e7c242b1c35f744".
biodb.TRACE[2023-10-14 11:10:10.766][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:10.777][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/aa9cb23a1eb4b2596e7c242b1c35f744.content".
biodb.DEBUG[2023-10-14 11:10:10.779][private$loadEntries] Creating entries from ids [3]: "168515466, 168514279, 168514126".
biodb.DEBUG[2023-10-14 11:10:10.781][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2023-10-14 11:10:10.783][cch$loadFileContent] Trying to load 3 files from cache: [3]: "168515466, 168514279, 168514126".
biodb.TRACE[2023-10-14 11:10:10.785][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2023-10-14 11:10:10.821][loadFileContents] Loaded 3 files from cache: [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/168515466.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/168514279.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/168514126.xml".
biodb.DEBUG[2023-10-14 11:10:10.823][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:10:10.824][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2023-10-14 11:10:10.826][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2023-10-14 11:10:10.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:10.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:10.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:10.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:10.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:10.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:10.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:10.846][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:10.847][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:10.848][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.850][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:10.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:10.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.857][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:10.858][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:10.859][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.860][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:10.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:10.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.867][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:10.869][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:10.870][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.871][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:10.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:10.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.878][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:10.880][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:10.881][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.882][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:10.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:10.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.889][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:10.890][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:10.892][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.893][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.894][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:10.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:10.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.900][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:10.901][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:10.902][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.904][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.905][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:10.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:10.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.911][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:10.912][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:10.913][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.914][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.916][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:10.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:10.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.922][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:10.923][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:10.924][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.926][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.928][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:10.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:10.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.935][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:10.937][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:10.938][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.940][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.942][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:10.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:10.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.949][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:10.951][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:10.952][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.954][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.956][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:10.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:10.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.963][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:10.964][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:10.966][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.967][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.970][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:10.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:10.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.977][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:10.979][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:10.980][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.982][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.984][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:10.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:10.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.991][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:10.993][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:10.995][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:10.996][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:10.998][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:11.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:11.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.005][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:11.007][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:11.009][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.010][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.012][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:11.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:11.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.019][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-10-14 11:10:11.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:11.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.026][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:11.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:11.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.033][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:11.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:11.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.040][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-10-14 11:10:11.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:11.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.047][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:11.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:11.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:11.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:11.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.061][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-10-14 11:10:11.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:11.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:11.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:11.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.074][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:11.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:11.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.092][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-10-14 11:10:11.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:11.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.100][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:11.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:11.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.107][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:11.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:11.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.114][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-10-14 11:10:11.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:11.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:11.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:11.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.127][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:11.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:11.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.133][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:11.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:11.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.143][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:11.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:11.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.154][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:11.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:11.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:11.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:11.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:11.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:11.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:11.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:11.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:11.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:11.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:11.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:11.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:11.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:11.201][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:11.202][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:11.203][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.205][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:11.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:11.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.214][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:11.216][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:11.217][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.218][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:11.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:11.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.225][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:11.227][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:11.228][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.229][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.231][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:11.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:11.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.236][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:11.238][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:11.239][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.240][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.242][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:11.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:11.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.247][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:11.248][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:11.249][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.250][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.252][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:11.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:11.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.257][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:11.259][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:11.260][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.261][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.263][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:11.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:11.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.268][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:11.269][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:11.271][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.272][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.273][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:11.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:11.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.278][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:11.280][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:11.281][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.282][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.283][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:11.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:11.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.288][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:11.290][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:11.291][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.292][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.293][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:11.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:11.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.298][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:11.300][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:11.301][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.302][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.304][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:11.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:11.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.309][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:11.311][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:11.312][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.313][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.315][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:11.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:11.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.320][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:11.321][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:11.322][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.323][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:11.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:11.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.330][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:11.331][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:11.332][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.333][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.335][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:11.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:11.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.340][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:11.341][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:11.342][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.343][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.345][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:11.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:11.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.350][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-10-14 11:10:11.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:11.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:11.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:11.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:11.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:11.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.366][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-10-14 11:10:11.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:11.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.371][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:11.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:11.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.375][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:11.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:11.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.380][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-10-14 11:10:11.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:11.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.385][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:11.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:11.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.390][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:11.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:11.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.395][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-10-14 11:10:11.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:11.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.399][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:11.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:11.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.404][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:11.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:11.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.409][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-10-14 11:10:11.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:11.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.415][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:11.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:11.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.421][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:11.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:11.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.426][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:11.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:11.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.431][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.435][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:11.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:11.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:11.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:11.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:11.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:11.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:11.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:11.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:11.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:11.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:11.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:11.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:11.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:11.479][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:11.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:11.484][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:11.485][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:11.486][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.487][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:11.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:11.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.494][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:11.495][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:11.496][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.497][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.499][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:11.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:11.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.504][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:11.505][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:11.506][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.507][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.509][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:11.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:11.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.522][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:11.523][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:11.524][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.525][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:11.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:11.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.532][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:11.533][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:11.534][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.536][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:11.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:11.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.542][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:11.544][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:11.545][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.546][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:11.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:11.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.553][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:11.554][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:11.555][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.556][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.558][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:11.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:11.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.563][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:11.565][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:11.566][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.567][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.569][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:11.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:11.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.574][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:11.576][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:11.577][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.578][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.579][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:11.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:11.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.584][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:11.586][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:11.587][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.588][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:11.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:11.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.595][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:11.596][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:11.598][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.599][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.600][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:11.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:11.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.605][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:11.607][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:11.608][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.609][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:11.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:11.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.616][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:11.618][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:11.619][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.620][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.622][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:11.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:11.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.627][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:11.628][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:11.629][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.630][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.632][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:11.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:11.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.637][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-10-14 11:10:11.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:11.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.642][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:11.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:11.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.647][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:11.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:11.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.652][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-10-14 11:10:11.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:11.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.657][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:11.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:11.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.662][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:11.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:11.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.667][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-10-14 11:10:11.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:11.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.673][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:11.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:11.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:11.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:11.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.683][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-10-14 11:10:11.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:11.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.688][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:11.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:11.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.692][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:11.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:11.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.697][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-10-14 11:10:11.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:11.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:11.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:11.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.707][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:11.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:11.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.712][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:11.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:11.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.717][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.723][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:11.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:11.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.736][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:11.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:11.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:11.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:11.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:11.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:11.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:11.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:11.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:11.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:11.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:11.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:11.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:11.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:11.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:11.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:11.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:11.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:11.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:11.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:11.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:11.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:11.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:11.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:11.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:11.799][self$createEntryFromContent] Accession numbers: 168515466, 168514279, 168514126.
biodb.DEBUG[2023-10-14 11:10:11.800][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:11.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:11.803][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:11.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:11.815][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:11.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:11.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:11.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:11.820][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.826][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.831][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:11.832][private$selectFields]
biodb.TRACE[2023-10-14 11:10:11.833][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:11.834][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:11.835][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:11.837][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.839][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.841][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.844][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.846][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.848][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.849][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.850][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.852][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:11.853][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:11.854][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.856][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.857][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.858][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.859][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:11.861][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.869][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.874][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.880][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168515466].
biodb.DEBUG[2023-10-14 11:10:11.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:11.882][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:11.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:11.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:11.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:11.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:11.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:11.896][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.901][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.906][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:11.908][private$selectFields]
biodb.TRACE[2023-10-14 11:10:11.909][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:11.910][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:11.911][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:11.912][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.914][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.915][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.916][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.917][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.919][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.920][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.921][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.922][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:11.923][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:11.925][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.933][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.934][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.936][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.937][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:11.939][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.944][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.949][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.954][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168514279].
biodb.DEBUG[2023-10-14 11:10:11.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:11.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:11.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:11.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:11.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:11.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:11.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:11.971][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.976][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.981][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:11.983][private$selectFields]
biodb.TRACE[2023-10-14 11:10:11.984][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:11.985][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:11.986][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:11.987][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.989][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.990][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.991][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.992][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.993][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:11.995][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:11.996][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:11.997][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:11.999][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:12.001][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.003][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.004][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.005][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.006][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:12.007][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.012][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.017][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.023][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168514126].
biodb.DEBUG[2023-10-14 11:10:12.024][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:12.025][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:10:12.027][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:12.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:12.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:12.037][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:12.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:12.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:12.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:12.078][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715:226.19339285[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:12.083][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:10:12.084][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:10:12.086][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2023-10-14 11:10:12.132][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2023-10-14 11:10:12.134][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-10-14 11:10:12.136][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-10-14 11:10:12.137][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2023-10-14 11:10:12.190][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:10:12.193][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.content"
biodb.TRACE[2023-10-14 11:10:12.199][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.request"
biodb.DEBUG[2023-10-14 11:10:12.202][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:12.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:12.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:12.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:12.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:12.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:12.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:12.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:12.220][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.225][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.230][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:12.231][private$selectFields]
biodb.TRACE[2023-10-14 11:10:12.232][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:12.233][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:12.235][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:12.236][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.237][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.239][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.240][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.241][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.242][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.243][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.245][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.246][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:12.247][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:12.248][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.250][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.251][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.252][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.254][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:12.256][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.265][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.275][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.282][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168651635].
biodb.DEBUG[2023-10-14 11:10:12.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:12.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:12.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:12.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:12.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:12.296][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:12.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:12.299][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.304][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.309][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:12.310][private$selectFields]
biodb.TRACE[2023-10-14 11:10:12.312][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:12.313][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:12.314][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:12.315][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.317][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.318][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.319][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.320][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.322][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.323][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.324][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.325][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:12.327][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:12.328][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.329][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.330][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.332][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.333][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:12.334][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.339][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.347][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.356][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168609923].
biodb.DEBUG[2023-10-14 11:10:12.358][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:12.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:12.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:12.371][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:12.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:12.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:12.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:12.376][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.382][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.388][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:12.389][private$selectFields]
biodb.TRACE[2023-10-14 11:10:12.390][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:12.391][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:12.393][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:12.394][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.396][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.397][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.398][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.399][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.402][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.404][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.405][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.406][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:12.408][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:12.409][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.410][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.412][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.413][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.414][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:12.415][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.420][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.426][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.431][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168608633].
biodb.DEBUG[2023-10-14 11:10:12.433][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:12.434][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-10-14 11:10:12.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:12.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:12.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:12.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:12.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:12.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:12.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:12.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:12.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.500][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:12.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:12.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.508][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:12.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:12.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:12.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:12.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.522][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:12.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:12.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:12.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:12.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:12.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:12.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:12.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:12.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:12.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:12.600][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254:204.126644913746[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:12.605][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:12.608][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3123cd8cb57ce8b130489fc490c416f0".
biodb.TRACE[2023-10-14 11:10:12.610][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:12.623][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/3123cd8cb57ce8b130489fc490c416f0.content".
biodb.DEBUG[2023-10-14 11:10:12.626][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:12.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:12.630][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:12.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:12.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:12.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:12.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:12.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:12.648][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.653][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.658][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:12.659][private$selectFields]
biodb.TRACE[2023-10-14 11:10:12.660][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:12.661][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:12.662][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:12.664][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.665][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.666][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.667][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.669][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.670][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.671][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.672][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.674][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:12.675][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:12.676][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.677][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.679][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.680][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.681][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:12.682][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.692][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.698][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168654156].
biodb.DEBUG[2023-10-14 11:10:12.699][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:12.700][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:12.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:12.709][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:12.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:12.711][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:12.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:12.714][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.719][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.724][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:12.725][private$selectFields]
biodb.TRACE[2023-10-14 11:10:12.726][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:12.728][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:12.729][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:12.730][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.731][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.733][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.734][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.735][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.736][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.737][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.739][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.740][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:12.741][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:12.742][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.744][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.745][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.746][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.747][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:12.748][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.753][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.758][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.763][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168653588].
biodb.DEBUG[2023-10-14 11:10:12.765][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:12.766][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:12.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:12.775][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:12.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:12.778][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:12.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:12.780][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.786][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.791][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:12.792][private$selectFields]
biodb.TRACE[2023-10-14 11:10:12.793][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:12.794][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:12.795][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:12.797][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.798][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.799][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.800][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.801][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.803][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.804][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.805][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.806][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:12.808][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:12.809][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.810][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.811][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.812][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.814][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:12.815][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.820][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.825][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:12.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:12.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:12.830][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168651976].
biodb.DEBUG[2023-10-14 11:10:12.831][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:12.833][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:10:12.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:12.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:12.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:12.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:12.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:12.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:12.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:12.887][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429:226.062362304571[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:12.893][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:10:12.895][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:10:12.897][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2023-10-14 11:10:12.980][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2023-10-14 11:10:12.982][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-10-14 11:10:12.983][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-10-14 11:10:12.985][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2023-10-14 11:10:13.043][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:10:13.046][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.content"
biodb.TRACE[2023-10-14 11:10:13.051][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.request"
biodb.DEBUG[2023-10-14 11:10:13.054][private$loadEntries] Creating entries from ids [2]: "168637314, 168637038".
biodb.DEBUG[2023-10-14 11:10:13.056][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2023-10-14 11:10:13.058][cch$loadFileContent] Trying to load 2 files from cache: [2]: "168637314, 168637038".
biodb.TRACE[2023-10-14 11:10:13.059][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2023-10-14 11:10:13.061][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:10:13.062][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:10:13.064][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-10-14 11:10:13.065][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:10:13.073][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2023-10-14 11:10:13.075][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2023-10-14 11:10:13.077][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/168637314,168637038/XML".
biodb.DEBUG[2023-10-14 11:10:13.080][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:10:13.081][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:10:13.083][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/168637314,168637038/XML".
biodb.TRACE[2023-10-14 11:10:13.198][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/168637314,168637038/XML).
biodb.TRACE[2023-10-14 11:10:13.330][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/168637314.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/168637038.xml"
biodb.DEBUG[2023-10-14 11:10:13.335][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:10:13.337][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2023-10-14 11:10:13.339][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2023-10-14 11:10:13.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:13.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:13.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:13.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:13.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:13.355][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:13.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:13.359][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:13.361][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:13.362][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.363][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:13.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:13.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.370][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:13.371][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:13.373][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.374][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.376][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:13.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:13.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.381][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:13.382][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:13.383][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.384][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.386][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:13.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:13.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.391][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:13.393][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:13.394][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.395][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:13.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:13.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.402][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:13.403][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:13.404][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.406][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.407][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:13.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:13.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.413][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:13.414][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:13.415][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.416][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.418][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:13.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:13.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.423][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:13.425][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:13.426][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.427][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.429][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:13.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:13.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.434][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:13.435][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:13.437][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.438][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.439][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:13.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:13.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.445][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:13.446][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:13.447][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.448][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.450][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:13.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:13.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.455][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:13.456][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:13.458][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.459][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.460][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:13.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:13.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.466][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:13.467][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:13.468][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.469][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.471][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:13.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:13.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.476][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:13.477][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:13.479][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.480][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:13.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:13.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.487][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:13.488][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:13.489][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.490][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.492][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:13.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:13.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.497][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:13.498][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:13.500][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.501][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.503][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:13.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:13.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.508][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-10-14 11:10:13.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:13.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.513][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:13.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:13.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:13.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:13.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.523][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-10-14 11:10:13.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:13.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:13.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:13.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:13.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:13.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.538][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-10-14 11:10:13.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:13.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:13.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:13.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:13.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:13.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.553][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-10-14 11:10:13.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:13.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.558][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:13.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:13.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.563][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:13.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:13.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.568][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-10-14 11:10:13.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:13.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.573][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:13.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:13.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:13.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:13.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.583][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:13.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:13.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.588][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:13.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:13.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.593][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:13.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:13.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:13.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:13.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.603][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:13.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:13.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:13.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:13.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:13.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:13.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:13.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:13.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:13.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:13.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:13.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:13.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:13.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:13.636][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:13.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:13.641][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:13.642][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:13.644][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.645][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:13.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:13.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.652][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:13.653][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:13.654][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.655][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.657][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:13.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:13.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.662][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:13.664][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:13.665][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.666][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.668][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:13.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:13.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.673][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:13.674][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:13.675][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.676][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:13.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:13.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.683][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:13.684][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:13.686][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.687][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.689][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:13.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:13.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.694][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:13.695][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:13.696][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.698][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:13.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:13.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.705][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:13.706][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:13.707][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.708][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.710][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:13.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:13.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.715][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:13.716][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:13.717][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.719][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.720][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:13.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:13.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.731][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:13.734][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:13.736][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.737][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.739][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:13.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:13.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.744][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:13.745][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:13.747][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.748][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.749][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:13.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:13.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.755][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:13.756][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:13.757][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.759][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.760][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:13.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:13.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.765][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:13.767][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:13.768][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.769][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:13.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:13.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.783][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:13.785][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:13.788][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.790][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.793][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:13.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:13.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.801][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:13.803][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:13.805][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.806][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.808][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:13.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:13.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.813][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-10-14 11:10:13.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:13.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:13.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:13.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.823][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:13.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:13.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.828][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-10-14 11:10:13.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:13.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.833][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:13.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:13.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:13.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:13.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.843][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-10-14 11:10:13.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:13.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:13.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:13.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:13.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:13.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.859][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-10-14 11:10:13.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:13.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.865][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:13.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:13.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.874][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:13.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:13.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.879][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-10-14 11:10:13.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:13.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:13.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:13.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.889][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:13.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:13.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.894][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:13.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:13.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.899][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:13.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:13.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.905][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:13.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:13.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:13.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:13.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.917][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:13.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:13.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:13.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:13.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:13.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:13.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:13.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:13.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:13.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:13.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:13.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:13.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:13.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:13.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:13.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:13.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:13.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:13.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:13.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:13.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:13.969][self$createEntryFromContent] Accession numbers: 168637314, 168637038.
biodb.DEBUG[2023-10-14 11:10:13.970][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:13.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:13.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:13.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:13.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:13.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:13.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:13.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:13.988][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:13.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:13.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.993][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:13.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:13.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:13.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:13.998][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:13.999][private$selectFields]
biodb.TRACE[2023-10-14 11:10:14.001][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:14.002][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:14.003][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:14.004][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.006][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.007][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.008][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.009][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.011][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.012][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.013][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.014][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:14.016][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:14.017][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.018][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.019][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.021][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.022][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:14.023][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.028][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.033][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.039][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168651635].
biodb.DEBUG[2023-10-14 11:10:14.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:14.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:14.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:14.050][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:14.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:14.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:14.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:14.056][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.061][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.066][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:14.067][private$selectFields]
biodb.TRACE[2023-10-14 11:10:14.069][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:14.070][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:14.071][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:14.072][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.074][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.075][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.076][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.077][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.079][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.080][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.081][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.082][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:14.083][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:14.085][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.086][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.087][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.088][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.090][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:14.091][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.097][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.105][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.111][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168637314].
biodb.DEBUG[2023-10-14 11:10:14.112][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:14.113][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:14.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:14.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:14.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:14.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:14.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:14.128][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.133][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.138][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:14.139][private$selectFields]
biodb.TRACE[2023-10-14 11:10:14.141][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:14.142][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:14.143][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:14.144][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.146][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.147][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.148][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.150][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.151][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.152][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.154][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.155][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:14.156][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:14.157][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.159][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.160][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.161][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.163][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:14.165][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.178][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.183][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.189][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168637038].
biodb.DEBUG[2023-10-14 11:10:14.190][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:14.192][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-10-14 11:10:14.204][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-10-14 11:10:14.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-10-14 11:10:14.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.209][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-10-14 11:10:14.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-10-14 11:10:14.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-10-14 11:10:14.221][biodb::testThat]
biodb.INFO [2023-10-14 11:10:14.223][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2023-10-14 11:10:14.226][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:10:14.228][biodb::testThat]
biodb.TRACE[2023-10-14 11:10:14.233][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-10-14 11:10:14.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-10-14 11:10:14.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.239][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-10-14 11:10:14.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-10-14 11:10:14.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:14.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:14.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:14.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:14.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:14.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:14.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:14.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:14.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:14.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:14.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:14.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:14.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:14.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:14.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:14.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:14.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:14.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:14.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:14.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:14.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:14.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:14.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:14.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:14.343][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:14.346][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:14.348][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2023-10-14 11:10:14.350][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:14.352][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2023-10-14 11:10:14.354][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:14.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:14.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:14.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:14.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:14.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:14.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:14.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:14.372][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.382][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:14.383][private$selectFields]
biodb.TRACE[2023-10-14 11:10:14.385][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:14.386][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:14.387][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:14.388][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.389][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.391][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.392][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.393][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.394][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.396][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.397][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.398][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:14.399][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:14.400][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.402][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.403][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.404][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.405][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:14.407][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.411][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.416][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.422][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168534120].
biodb.DEBUG[2023-10-14 11:10:14.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:14.425][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:14.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:14.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:14.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:14.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:14.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:14.440][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.447][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.453][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:14.454][private$selectFields]
biodb.TRACE[2023-10-14 11:10:14.455][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:14.457][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:14.458][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:14.459][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.460][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.462][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.463][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.464][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.465][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.467][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.468][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.469][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:14.470][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:14.472][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.473][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.474][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.475][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.477][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:14.478][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.483][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.488][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.493][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168533548].
biodb.DEBUG[2023-10-14 11:10:14.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:14.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:14.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:14.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:14.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:14.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:14.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:14.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.515][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.520][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:14.521][private$selectFields]
biodb.TRACE[2023-10-14 11:10:14.522][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:14.524][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:14.525][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:14.526][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.527][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.528][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.530][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.531][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.532][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.533][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.534][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.536][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:14.537][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:14.538][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.539][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.541][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.542][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.543][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:14.544][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.549][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.554][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.559][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168531246].
biodb.DEBUG[2023-10-14 11:10:14.561][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:14.562][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:10:14.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:14.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:14.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:14.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:14.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:14.577][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:14.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:14.623][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:14.627][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:14.629][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2023-10-14 11:10:14.630][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:14.633][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2023-10-14 11:10:14.635][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:14.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:14.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:14.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:14.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:14.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:14.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:14.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:14.655][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.662][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.668][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:14.669][private$selectFields]
biodb.TRACE[2023-10-14 11:10:14.671][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:14.672][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:14.673][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:14.674][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.676][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.677][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.678][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.679][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.681][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.682][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.683][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.684][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:14.685][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:14.687][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.688][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.689][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.690][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.692][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:14.693][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.698][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.703][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.708][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168651635].
biodb.DEBUG[2023-10-14 11:10:14.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:14.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:14.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:14.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:14.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:14.724][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:14.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:14.728][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.734][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.739][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:14.740][private$selectFields]
biodb.TRACE[2023-10-14 11:10:14.742][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:14.743][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:14.744][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:14.745][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.747][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.748][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.749][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.750][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.751][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.753][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.754][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.755][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:14.756][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:14.758][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.759][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.760][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.761][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.762][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:14.764][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.769][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.774][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.779][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168609923].
biodb.DEBUG[2023-10-14 11:10:14.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:14.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:14.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:14.790][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:14.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:14.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:14.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:14.795][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.800][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.805][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:14.806][private$selectFields]
biodb.TRACE[2023-10-14 11:10:14.808][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:14.809][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:14.810][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:14.811][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.812][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.814][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.815][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.816][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.818][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.819][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.820][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.821][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:14.823][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:14.824][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.825][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.826][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.828][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.829][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:14.831][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.837][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.842][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:14.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.847][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168608633].
biodb.DEBUG[2023-10-14 11:10:14.848][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:14.850][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-10-14 11:10:14.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:14.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:14.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:14.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:14.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.893][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:14.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:14.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:14.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:14.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.908][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:14.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:14.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:14.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:14.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:14.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:14.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:14.923][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:14.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:14.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:14.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:14.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:14.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:14.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:14.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:14.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:14.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:14.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:14.983][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:14.986][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:14.988][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2023-10-14 11:10:14.990][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:14.992][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2023-10-14 11:10:14.994][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:14.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:14.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:14.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:15.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:15.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:15.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:15.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:15.019][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.027][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.033][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:15.034][private$selectFields]
biodb.TRACE[2023-10-14 11:10:15.035][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:15.036][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:15.038][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:15.039][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.040][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.041][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.043][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.044][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.045][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.046][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.048][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.049][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:15.050][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:15.051][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.053][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.054][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.055][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.056][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:15.058][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.063][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.068][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.073][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168654156].
biodb.DEBUG[2023-10-14 11:10:15.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:15.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:15.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:15.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:15.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:15.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:15.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:15.090][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.095][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.100][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:15.101][private$selectFields]
biodb.TRACE[2023-10-14 11:10:15.102][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:15.103][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:15.105][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:15.106][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.107][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.108][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.110][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.111][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.112][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.113][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.115][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.116][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:15.117][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:15.118][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.119][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.121][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.122][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.123][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:15.125][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.130][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.140][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168653588].
biodb.DEBUG[2023-10-14 11:10:15.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:15.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:15.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:15.151][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:15.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:15.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:15.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:15.157][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.162][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.166][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:15.168][private$selectFields]
biodb.TRACE[2023-10-14 11:10:15.169][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:15.170][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:15.171][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:15.172][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.174][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.175][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.176][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.177][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.178][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.180][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.181][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.182][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:15.183][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:15.185][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.186][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.187][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.188][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.190][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:15.191][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.196][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.201][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.206][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168651976].
biodb.DEBUG[2023-10-14 11:10:15.207][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:15.208][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:10:15.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:15.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:15.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:15.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:15.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:15.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:15.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:15.260][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:15.264][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:15.266][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2023-10-14 11:10:15.268][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:15.270][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2023-10-14 11:10:15.272][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:15.274][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:15.275][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:15.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:15.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:15.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:15.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:15.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:15.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.309][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.318][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:15.321][private$selectFields]
biodb.TRACE[2023-10-14 11:10:15.323][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:15.325][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:15.327][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:15.330][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.332][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.334][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.336][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.338][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.341][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.343][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.345][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.347][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:15.349][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:15.351][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.354][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.357][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.360][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.361][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:15.363][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.369][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.380][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.386][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168654162].
biodb.DEBUG[2023-10-14 11:10:15.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:15.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:15.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:15.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:15.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:15.402][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:15.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:15.406][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.412][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.418][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:15.419][private$selectFields]
biodb.TRACE[2023-10-14 11:10:15.420][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:15.421][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:15.423][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:15.424][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.425][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.427][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.428][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.429][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.430][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.432][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.433][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.434][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:15.435][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:15.436][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.438][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.439][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.440][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.441][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:15.443][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.449][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.457][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.462][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168652975].
biodb.DEBUG[2023-10-14 11:10:15.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:15.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:15.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:15.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:15.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:15.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:15.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:15.487][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.493][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.499][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:15.500][private$selectFields]
biodb.TRACE[2023-10-14 11:10:15.502][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:15.503][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:15.505][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:15.506][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.507][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.509][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.510][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.512][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.514][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.515][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.516][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.517][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:15.519][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:15.520][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.521][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.523][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.525][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.526][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:15.528][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.535][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.540][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:15.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.545][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168651635].
biodb.DEBUG[2023-10-14 11:10:15.546][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:15.548][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-10-14 11:10:15.579][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-10-14 11:10:15.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-10-14 11:10:15.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.584][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-10-14 11:10:15.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-10-14 11:10:15.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.595][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:15.596][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:15.598][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.599][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.600][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:15.602][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:15.603][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.605][ef$get] fields variable is a list.
biodb.INFO [2023-10-14 11:10:15.607][biodb::testThat]
biodb.INFO [2023-10-14 11:10:15.608][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2023-10-14 11:10:15.610][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:10:15.611][biodb::testThat]
biodb.TRACE[2023-10-14 11:10:15.615][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-10-14 11:10:15.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-10-14 11:10:15.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.621][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-10-14 11:10:15.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-10-14 11:10:15.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:15.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:15.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:15.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:15.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.637][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:15.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:15.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:15.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:15.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:15.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:15.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:15.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:15.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:15.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:15.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:15.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:15.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:15.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:15.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:15.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:15.672][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:15.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:15.681][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:15.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:15.683][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:15.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:15.722][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:15.726][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:10:15.728][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:10:15.729][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2023-10-14 11:10:15.779][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2023-10-14 11:10:15.781][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-10-14 11:10:15.784][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-10-14 11:10:15.787][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2023-10-14 11:10:15.828][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:10:15.831][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content"
biodb.TRACE[2023-10-14 11:10:15.836][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.request"
biodb.DEBUG[2023-10-14 11:10:15.840][private$loadEntries] Creating entries from ids [3]: "168654331, 168654171, 168654102".
biodb.DEBUG[2023-10-14 11:10:15.842][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2023-10-14 11:10:15.844][cch$loadFileContent] Trying to load 3 files from cache: [3]: "168654331, 168654171, 168654102".
biodb.TRACE[2023-10-14 11:10:15.846][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2023-10-14 11:10:15.847][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:10:15.849][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:10:15.850][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-10-14 11:10:15.851][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:10:15.853][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2023-10-14 11:10:15.854][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2023-10-14 11:10:15.856][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/168654331,168654171,168654102/XML".
biodb.DEBUG[2023-10-14 11:10:15.859][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:10:15.860][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:10:15.862][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/168654331,168654171,168654102/XML".
biodb.TRACE[2023-10-14 11:10:15.960][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/168654331,168654171,168654102/XML).
biodb.TRACE[2023-10-14 11:10:16.076][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/168654331.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/168654171.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/168654102.xml"
biodb.DEBUG[2023-10-14 11:10:16.082][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:10:16.085][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2023-10-14 11:10:16.088][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2023-10-14 11:10:16.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:16.093][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:16.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:16.104][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:16.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:16.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:16.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:16.112][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:16.113][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:16.114][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.116][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:16.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:16.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.123][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:16.124][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:16.125][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.126][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.128][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:16.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:16.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.135][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:16.137][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:16.138][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.139][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.141][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:16.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:16.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.146][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:16.147][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:16.148][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.150][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.152][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:16.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:16.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.158][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:16.160][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:16.161][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.163][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:16.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:16.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.172][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:16.174][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:16.175][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.177][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:16.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:16.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.185][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:16.187][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:16.188][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.190][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.192][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:16.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:16.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.198][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:16.200][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:16.202][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.203][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.205][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:16.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:16.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.212][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:16.213][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:16.214][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.223][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.226][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:16.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:16.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.231][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:16.232][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:16.233][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.234][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.236][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:16.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:16.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.241][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:16.242][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:16.244][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.245][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.246][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:16.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:16.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.251][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:16.253][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:16.254][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.255][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:16.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:16.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.262][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:16.264][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:16.265][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.266][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.268][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:16.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:16.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.273][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:16.274][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:16.275][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.276][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.278][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:16.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:16.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.283][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-10-14 11:10:16.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:16.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:16.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:16.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:16.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:16.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.297][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-10-14 11:10:16.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:16.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.302][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:16.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:16.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.307][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:16.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:16.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.312][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-10-14 11:10:16.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:16.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.317][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:16.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:16.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.321][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:16.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:16.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.326][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-10-14 11:10:16.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:16.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.331][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:16.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:16.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:16.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:16.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.341][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-10-14 11:10:16.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:16.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:16.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:16.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:16.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:16.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.355][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:16.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:16.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.360][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:16.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:16.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.365][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:16.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:16.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:16.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:16.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.374][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:16.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:16.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:16.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:16.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:16.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:16.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:16.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:16.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:16.394][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:16.395][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:16.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:16.403][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:16.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:16.405][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:16.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:16.410][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:16.411][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:16.412][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.413][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:16.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:16.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.420][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:16.421][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:16.422][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.424][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:16.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:16.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.430][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:16.431][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:16.432][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.433][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.435][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:16.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:16.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.440][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:16.441][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:16.442][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.443][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.445][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:16.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:16.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.450][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:16.451][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:16.452][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.453][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:16.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:16.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.460][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:16.461][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:16.462][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.463][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.465][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:16.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:16.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.470][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:16.471][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:16.472][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.474][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.475][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:16.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:16.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.481][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:16.482][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:16.483][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.485][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.486][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:16.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:16.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.491][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:16.493][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:16.494][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.495][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:16.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:16.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.502][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:16.503][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:16.504][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.505][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:16.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:16.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.512][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:16.513][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:16.515][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.516][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.517][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:16.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:16.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.522][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:16.524][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:16.525][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.526][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:16.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:16.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.533][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:16.534][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:16.535][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.536][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.538][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:16.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:16.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.543][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:16.544][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:16.546][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.547][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.548][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:16.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:16.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.554][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-10-14 11:10:16.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:16.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.560][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:16.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:16.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.568][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:16.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:16.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.574][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-10-14 11:10:16.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:16.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.579][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:16.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:16.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.584][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:16.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:16.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.589][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-10-14 11:10:16.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:16.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.594][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:16.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:16.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.598][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:16.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:16.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.603][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-10-14 11:10:16.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:16.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:16.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:16.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.613][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:16.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:16.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.618][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-10-14 11:10:16.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:16.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:16.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:16.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.640][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:16.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:16.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.645][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:16.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:16.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.650][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:16.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:16.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.655][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:16.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:16.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:16.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:16.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.665][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:16.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:16.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:16.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:16.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:16.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:16.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:16.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:16.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:16.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:16.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:16.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:16.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:16.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:16.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:16.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:16.701][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:16.703][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:16.704][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.705][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:16.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:16.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.711][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:16.713][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:16.714][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.715][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:16.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:16.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.722][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:16.723][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:16.724][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.726][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.727][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:16.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:16.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.732][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:16.734][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:16.735][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.736][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.738][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:16.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:16.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.743][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:16.744][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:16.746][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.747][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.748][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:16.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:16.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.754][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:16.756][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:16.757][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.758][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:16.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:16.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.765][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:16.766][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:16.767][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.768][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.770][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:16.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:16.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.775][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:16.776][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:16.777][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.779][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.780][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:16.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:16.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.785][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:16.787][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:16.788][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.789][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.791][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:16.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:16.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.796][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:16.797][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:16.798][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.799][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:16.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:16.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.808][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:16.810][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:16.811][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.812][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.814][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:16.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:16.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.819][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:16.820][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:16.822][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.823][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:16.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:16.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.829][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:16.831][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:16.832][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.833][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.835][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:16.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:16.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.840][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:16.841][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:16.842][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.843][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.845][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:16.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:16.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.850][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-10-14 11:10:16.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:16.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.855][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:16.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:16.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.860][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:16.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:16.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.865][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-10-14 11:10:16.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:16.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.870][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:16.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:16.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.875][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:16.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:16.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.881][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-10-14 11:10:16.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:16.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.886][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:16.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:16.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:16.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:16.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.896][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-10-14 11:10:16.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:16.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:16.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:16.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:16.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:16.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.914][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-10-14 11:10:16.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:16.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:16.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:16.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.924][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:16.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:16.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.929][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:16.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:16.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.934][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:16.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:16.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.939][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:16.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:16.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:16.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:16.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.949][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:16.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:16.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:16.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:16.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:16.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:16.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:16.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:16.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:16.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:16.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:16.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:16.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:16.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:16.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:16.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:16.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:16.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:16.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:17.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:17.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:17.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:17.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:17.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:17.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:17.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:17.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:17.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:17.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:17.032][self$createEntryFromContent] Accession numbers: 168654331, 168654171, 168654102.
biodb.DEBUG[2023-10-14 11:10:17.034][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:17.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:17.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:17.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:17.049][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:17.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:17.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:17.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:17.056][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.069][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.074][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:17.075][private$selectFields]
biodb.TRACE[2023-10-14 11:10:17.077][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:17.078][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:17.079][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:17.080][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.082][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.083][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.085][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.086][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.087][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.088][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.090][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.091][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:17.092][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:17.094][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.095][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.096][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.098][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.099][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:17.100][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.106][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.112][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.117][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168654331].
biodb.DEBUG[2023-10-14 11:10:17.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:17.119][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:17.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:17.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:17.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:17.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:17.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:17.134][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.140][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.148][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:17.150][private$selectFields]
biodb.TRACE[2023-10-14 11:10:17.151][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:17.152][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:17.153][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:17.155][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.156][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.157][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.159][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.160][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.161][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.163][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.164][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.165][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:17.166][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:17.168][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.169][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.170][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.171][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.173][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:17.174][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.179][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.184][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.190][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168654171].
biodb.DEBUG[2023-10-14 11:10:17.191][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:17.192][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:17.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:17.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:17.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:17.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:17.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:17.208][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.217][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.223][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:17.224][private$selectFields]
biodb.TRACE[2023-10-14 11:10:17.226][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:17.228][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:17.230][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:17.232][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.235][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.237][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.238][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.240][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.241][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.243][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.244][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.245][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:17.246][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:17.248][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.249][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.250][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.252][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.253][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:17.254][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.260][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.265][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:17.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.270][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168654102].
biodb.DEBUG[2023-10-14 11:10:17.272][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:17.273][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:10:17.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:17.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:17.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:17.285][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:17.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:17.288][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:17.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:17.326][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:17.330][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:10:17.331][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:10:17.334][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2023-10-14 11:10:17.389][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2023-10-14 11:10:17.391][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-10-14 11:10:17.393][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-10-14 11:10:17.395][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2023-10-14 11:10:17.559][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:10:17.562][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content"
biodb.TRACE[2023-10-14 11:10:17.569][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.request"
biodb.DEBUG[2023-10-14 11:10:17.575][private$loadEntries] Creating entries from ids [2]: "168653535, 168651342".
biodb.DEBUG[2023-10-14 11:10:17.577][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2023-10-14 11:10:17.580][cch$loadFileContent] Trying to load 2 files from cache: [2]: "168653535, 168651342".
biodb.TRACE[2023-10-14 11:10:17.582][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2023-10-14 11:10:17.584][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:10:17.586][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:10:17.587][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-10-14 11:10:17.589][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:10:17.590][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2023-10-14 11:10:17.591][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2023-10-14 11:10:17.594][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/168653535,168651342/XML".
biodb.DEBUG[2023-10-14 11:10:17.596][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:10:17.598][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:10:17.599][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/168653535,168651342/XML".
biodb.TRACE[2023-10-14 11:10:17.682][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/168653535,168651342/XML).
biodb.TRACE[2023-10-14 11:10:17.763][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/168653535.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/168651342.xml"
biodb.DEBUG[2023-10-14 11:10:17.768][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:10:17.770][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2023-10-14 11:10:17.772][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2023-10-14 11:10:17.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:17.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:17.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:17.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:17.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:17.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:17.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:17.792][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:17.794][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:17.795][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.796][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:17.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:17.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.804][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:17.806][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:17.808][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.809][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.811][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:17.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:17.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.818][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:17.820][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:17.821][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.823][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:17.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:17.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.832][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:17.833][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:17.835][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.836][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:17.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:17.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.843][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:17.845][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:17.846][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.847][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:17.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:17.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.854][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:17.855][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:17.856][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.857][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.859][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:17.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:17.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.864][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:17.865][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:17.867][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.868][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.869][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:17.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:17.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.875][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:17.876][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:17.877][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.878][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.880][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:17.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:17.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.893][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:17.895][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:17.896][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.897][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:17.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:17.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.904][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:17.905][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:17.906][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.908][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.909][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:17.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:17.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.915][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:17.916][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:17.917][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.918][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.920][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:17.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:17.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.925][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:17.927][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:17.928][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.929][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:17.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:17.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.936][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:17.937][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:17.938][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.940][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.941][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:17.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:17.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.946][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:17.948][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:17.949][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.950][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.952][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:17.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:17.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.957][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-10-14 11:10:17.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:17.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.962][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:17.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:17.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.968][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:17.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:17.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.973][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-10-14 11:10:17.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:17.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.979][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:17.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:17.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.984][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:17.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:17.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.990][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-10-14 11:10:17.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:17.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:17.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:17.997][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:17.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:18.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:18.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:18.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.008][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-10-14 11:10:18.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:18.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:18.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:18.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.018][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:18.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:18.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.023][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-10-14 11:10:18.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:18.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.028][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:18.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:18.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.033][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:18.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:18.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.038][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:18.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:18.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.044][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.049][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:18.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:18.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.059][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:18.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:18.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:18.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:18.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:18.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:18.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:18.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:18.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:18.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:18.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:18.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:18.097][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:18.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:18.101][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:18.103][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:18.104][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.105][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:18.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:18.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.112][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:18.113][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:18.114][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.116][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.117][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:18.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:18.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.122][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:18.124][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:18.125][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.126][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.128][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:18.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:18.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.135][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:18.137][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:18.140][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.141][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:18.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:18.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.149][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:18.151][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:18.152][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.153][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:18.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:18.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.160][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:18.161][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:18.162][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.163][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:18.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:18.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.170][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:18.171][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:18.172][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.173][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.175][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:18.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:18.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.180][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:18.181][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:18.183][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.185][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.187][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:18.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:18.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.192][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:18.193][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:18.194][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.195][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.197][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:18.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:18.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.202][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:18.204][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:18.205][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.206][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.208][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:18.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:18.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.213][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:18.214][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:18.215][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.216][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.218][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:18.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:18.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.223][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:18.224][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:18.225][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.226][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.228][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:18.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:18.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.233][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:18.234][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:18.235][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.236][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.238][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:18.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:18.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.243][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:18.244][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:18.245][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.246][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.248][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:18.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:18.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.253][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-10-14 11:10:18.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:18.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.258][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:18.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:18.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.264][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:18.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:18.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.269][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-10-14 11:10:18.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:18.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.273][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:18.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:18.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.278][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:18.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:18.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.283][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-10-14 11:10:18.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:18.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:18.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:18.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:18.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:18.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.297][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-10-14 11:10:18.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:18.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.302][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:18.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:18.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.315][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:18.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:18.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.320][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-10-14 11:10:18.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:18.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:18.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:18.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:18.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:18.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.335][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:18.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:18.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.340][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.345][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:18.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:18.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.355][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:18.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:18.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:18.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:18.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:18.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:18.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:18.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:18.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:18.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:18.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:18.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:18.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:18.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:18.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:18.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:18.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:18.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:18.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:18.403][self$createEntryFromContent] Accession numbers: 168653535, 168651342.
biodb.DEBUG[2023-10-14 11:10:18.404][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:18.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:18.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:18.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:18.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:18.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:18.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:18.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:18.422][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.427][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.434][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:18.436][private$selectFields]
biodb.TRACE[2023-10-14 11:10:18.438][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:18.440][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:18.442][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:18.444][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.446][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.448][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.450][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.453][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.455][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.457][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.459][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.461][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:18.463][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:18.465][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.467][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.469][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.471][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.474][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:18.476][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.485][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.494][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.504][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168653535].
biodb.DEBUG[2023-10-14 11:10:18.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:18.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:18.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:18.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:18.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:18.528][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:18.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:18.533][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.542][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.550][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:18.552][private$selectFields]
biodb.TRACE[2023-10-14 11:10:18.555][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:18.557][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:18.559][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:18.561][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.563][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.565][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.567][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.570][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.572][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.574][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.576][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.578][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:18.580][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:18.583][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.585][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.587][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.589][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.591][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:18.593][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.602][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.611][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.620][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168651635].
biodb.DEBUG[2023-10-14 11:10:18.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:18.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:18.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:18.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:18.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:18.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:18.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:18.648][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.657][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.666][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:18.668][private$selectFields]
biodb.TRACE[2023-10-14 11:10:18.670][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:18.672][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:18.674][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:18.676][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.678][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.681][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.683][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.685][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.687][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.689][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.691][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.693][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:18.695][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:18.697][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.700][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.702][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.704][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.706][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:18.708][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.716][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.725][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.734][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168651342].
biodb.DEBUG[2023-10-14 11:10:18.736][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:18.738][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:10:18.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:18.790][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:18.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:18.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:18.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:18.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:18.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:18.869][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:18.875][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:18.878][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2023-10-14 11:10:18.881][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:18.884][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2023-10-14 11:10:18.898][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:18.902][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:18.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:18.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:18.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:18.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:18.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:18.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:18.928][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.934][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.940][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:18.941][private$selectFields]
biodb.TRACE[2023-10-14 11:10:18.942][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:18.944][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:18.945][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:18.946][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.948][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.949][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.952][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.954][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.956][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.958][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.959][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.960][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:18.962][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:18.963][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.965][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.967][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.969][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.971][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:18.973][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.981][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.990][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:18.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:18.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:18.997][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168534120].
biodb.DEBUG[2023-10-14 11:10:18.999][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:19.000][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:19.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:19.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:19.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:19.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:19.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:19.015][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.020][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.026][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:19.027][private$selectFields]
biodb.TRACE[2023-10-14 11:10:19.028][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:19.029][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:19.030][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:19.032][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.033][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.035][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.036][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.038][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.039][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.040][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.041][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.043][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:19.044][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:19.045][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.047][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.048][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.049][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.050][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:19.052][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.057][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.062][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.068][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168533548].
biodb.DEBUG[2023-10-14 11:10:19.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:19.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:19.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:19.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:19.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:19.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:19.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:19.086][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.091][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.097][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:19.098][private$selectFields]
biodb.TRACE[2023-10-14 11:10:19.099][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:19.100][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:19.101][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:19.103][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.104][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.105][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.106][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.108][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.109][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.110][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.111][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.113][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:19.114][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:19.115][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.117][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.118][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.119][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.120][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:19.122][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.128][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.136][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.141][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168531246].
biodb.DEBUG[2023-10-14 11:10:19.143][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:19.144][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:10:19.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:19.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:19.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:19.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:19.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:19.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:19.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:19.207][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:19.213][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:19.215][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2023-10-14 11:10:19.217][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:19.221][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2023-10-14 11:10:19.225][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:19.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:19.228][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:19.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:19.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:19.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:19.241][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:19.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:19.243][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.249][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.254][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:19.255][private$selectFields]
biodb.TRACE[2023-10-14 11:10:19.256][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:19.258][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:19.259][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:19.260][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.262][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.263][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.264][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.265][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.267][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.268][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.270][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.271][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:19.272][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:19.274][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.275][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.276][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.277][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.279][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:19.281][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.286][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.291][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.297][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168651635].
biodb.DEBUG[2023-10-14 11:10:19.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:19.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:19.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:19.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:19.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:19.318][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:19.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:19.321][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.330][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.337][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:19.338][private$selectFields]
biodb.TRACE[2023-10-14 11:10:19.340][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:19.341][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:19.342][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:19.344][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.346][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.347][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.349][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.350][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.352][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.354][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.356][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.358][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:19.360][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:19.362][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.364][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.365][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.367][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.368][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:19.369][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.375][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.389][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.395][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168609923].
biodb.DEBUG[2023-10-14 11:10:19.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:19.398][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:19.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:19.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:19.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:19.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:19.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:19.414][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.419][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.428][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:19.430][private$selectFields]
biodb.TRACE[2023-10-14 11:10:19.432][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:19.433][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:19.434][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:19.436][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.438][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.440][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.442][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.443][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.445][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.447][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.448][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.449][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:19.451][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:19.452][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.455][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.457][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.459][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.460][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:19.462][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.467][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.473][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:19.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:19.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:19.479][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168608633].
biodb.DEBUG[2023-10-14 11:10:19.481][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:19.483][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:10:19.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:19.531][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:19.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:19.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:19.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:19.546][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:19.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:19.596][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:19.600][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:10:19.601][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:10:19.603][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2023-10-14 11:10:19.657][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2023-10-14 11:10:19.659][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-10-14 11:10:19.661][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-10-14 11:10:19.662][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2023-10-14 11:10:19.727][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:10:19.730][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content"
biodb.TRACE[2023-10-14 11:10:20.377][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.request"
biodb.DEBUG[2023-10-14 11:10:20.386][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:20.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:20.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:20.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:20.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:20.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:20.402][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:20.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:20.407][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:20.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:20.414][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:20.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:20.424][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:20.426][private$selectFields]
biodb.TRACE[2023-10-14 11:10:20.427][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:20.429][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:20.431][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:20.432][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.434][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.435][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:20.437][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:20.438][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.440][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.442][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:20.443][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:20.445][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:20.446][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:20.447][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.449][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.450][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:20.452][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:20.453][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:20.454][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:20.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:20.460][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:20.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:20.465][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:20.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:20.474][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168654156].
biodb.DEBUG[2023-10-14 11:10:20.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:20.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:20.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:20.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:20.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:20.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:20.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:20.498][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:20.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:20.504][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:20.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:20.510][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:20.511][private$selectFields]
biodb.TRACE[2023-10-14 11:10:20.513][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:20.514][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:20.515][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:20.517][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.518][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.520][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:20.521][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:20.522][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.523][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.525][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:20.526][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:20.527][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:20.529][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:20.531][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.532][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.534][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:20.535][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:20.536][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:20.538][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:20.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:20.545][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:20.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:20.551][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:20.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:20.556][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168653588].
biodb.DEBUG[2023-10-14 11:10:20.558][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:20.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:20.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:20.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:20.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:20.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:20.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:20.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:20.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:20.583][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:20.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:20.592][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:20.593][private$selectFields]
biodb.TRACE[2023-10-14 11:10:20.595][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:20.596][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:20.597][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:20.599][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.600][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.602][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:20.603][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:20.604][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.606][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.607][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:20.608][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:20.610][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:20.611][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:20.612][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.614][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.615][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:20.616][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:20.617][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:20.619][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:20.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:20.625][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:20.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:20.633][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:20.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:20.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:20.641][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168651976].
biodb.DEBUG[2023-10-14 11:10:20.643][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:20.645][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:10:20.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:20.657][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:20.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:20.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:20.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:20.671][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:20.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:20.722][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:20.725][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:10:20.727][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:10:20.729][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2023-10-14 11:10:20.780][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2023-10-14 11:10:20.782][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-10-14 11:10:20.784][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-10-14 11:10:20.786][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2023-10-14 11:10:20.839][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:10:20.842][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content"
biodb.TRACE[2023-10-14 11:10:20.847][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.request"
biodb.DEBUG[2023-10-14 11:10:20.851][private$loadEntries] Creating entries from ids [3]: "168654592, 168654580, 168653848".
biodb.DEBUG[2023-10-14 11:10:20.853][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2023-10-14 11:10:20.856][cch$loadFileContent] Trying to load 3 files from cache: [3]: "168654592, 168654580, 168653848".
biodb.TRACE[2023-10-14 11:10:20.858][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2023-10-14 11:10:20.860][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:10:20.861][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:10:20.863][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-10-14 11:10:20.864][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:10:20.865][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2023-10-14 11:10:20.867][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2023-10-14 11:10:20.869][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/168654592,168654580,168653848/XML".
biodb.DEBUG[2023-10-14 11:10:20.872][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:10:20.873][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:10:20.875][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/168654592,168654580,168653848/XML".
biodb.TRACE[2023-10-14 11:10:20.993][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/168654592,168654580,168653848/XML).
biodb.TRACE[2023-10-14 11:10:21.093][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/168654592.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/168654580.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/168653848.xml"
biodb.DEBUG[2023-10-14 11:10:21.102][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:10:21.105][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2023-10-14 11:10:21.108][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2023-10-14 11:10:21.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:21.113][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:21.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:21.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:21.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:21.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:21.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:21.133][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:21.135][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:21.137][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.139][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:21.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:21.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.148][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:21.151][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:21.153][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.155][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.157][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:21.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:21.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.166][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:21.168][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:21.170][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.172][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.175][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:21.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:21.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.184][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:21.186][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:21.188][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.190][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:21.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:21.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.202][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:21.204][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:21.206][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.207][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.209][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:21.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:21.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.217][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:21.218][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:21.220][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.221][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.223][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:21.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:21.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.228][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:21.230][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:21.231][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.232][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.235][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:21.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:21.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.241][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:21.242][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:21.243][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.244][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.246][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:21.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:21.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.252][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:21.253][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:21.254][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.255][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.257][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:21.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:21.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.262][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:21.263][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:21.264][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.266][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.267][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:21.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:21.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.273][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:21.274][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:21.275][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.276][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.278][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:21.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:21.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.283][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:21.285][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:21.286][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.287][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:21.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:21.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.295][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:21.296][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:21.297][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.299][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.300][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:21.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:21.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.306][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:21.307][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:21.309][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.310][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.312][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:21.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:21.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.317][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-10-14 11:10:21.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:21.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.322][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:21.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:21.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.327][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:21.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:21.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.333][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-10-14 11:10:21.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:21.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.338][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:21.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:21.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.343][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:21.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:21.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.348][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-10-14 11:10:21.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:21.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:21.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:21.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.362][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:21.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:21.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.367][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-10-14 11:10:21.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:21.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.372][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:21.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:21.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.377][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:21.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:21.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.382][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-10-14 11:10:21.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:21.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:21.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:21.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:21.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:21.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.399][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:21.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:21.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.406][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:21.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:21.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.411][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:21.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:21.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:21.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:21.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.422][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:21.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:21.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:21.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:21.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:21.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:21.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:21.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:21.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:21.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:21.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:21.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:21.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:21.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:21.478][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:21.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:21.483][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:21.484][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:21.487][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.489][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:21.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:21.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.501][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:21.503][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:21.505][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.507][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.510][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:21.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:21.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.518][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:21.520][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:21.523][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.525][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:21.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:21.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.536][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:21.538][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:21.539][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.540][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:21.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:21.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.547][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:21.548][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:21.549][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.551][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.552][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:21.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:21.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.558][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:21.560][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:21.561][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.562][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.564][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:21.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:21.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.569][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:21.570][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:21.571][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.573][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.574][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:21.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:21.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.579][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:21.581][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:21.582][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.583][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.585][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:21.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:21.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.591][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:21.593][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:21.594][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.595][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.597][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:21.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:21.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.602][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:21.604][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:21.605][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.606][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:21.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:21.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.613][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:21.614][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:21.616][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.617][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.618][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:21.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:21.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.624][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:21.625][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:21.627][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.628][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:21.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:21.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.635][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:21.637][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:21.638][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.640][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.643][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:21.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:21.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.652][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:21.654][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:21.656][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.659][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.661][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:21.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:21.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.669][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-10-14 11:10:21.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:21.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.675][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:21.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:21.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.680][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:21.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:21.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.686][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-10-14 11:10:21.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:21.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:21.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:21.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:21.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:21.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.706][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-10-14 11:10:21.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:21.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:21.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:21.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.718][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:21.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:21.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.723][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-10-14 11:10:21.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:21.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:21.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:21.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.734][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:21.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:21.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.740][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-10-14 11:10:21.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:21.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.749][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:21.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:21.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.755][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:21.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:21.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.760][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:21.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:21.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.766][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:21.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:21.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.771][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:21.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:21.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:21.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:21.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.782][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:21.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:21.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:21.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:21.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:21.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:21.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:21.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:21.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:21.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:21.805][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:21.806][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:21.814][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:21.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:21.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:21.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:21.822][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:21.823][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:21.825][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.826][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:21.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:21.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.833][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:21.834][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:21.836][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.837][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.839][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:21.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:21.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.844][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:21.846][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:21.847][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.848][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.850][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:21.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:21.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.855][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:21.856][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:21.858][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.859][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:21.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:21.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.866][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:21.867][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:21.868][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.870][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:21.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:21.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.877][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:21.878][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:21.879][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.881][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.883][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:21.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:21.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.888][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:21.890][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:21.891][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.892][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.894][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:21.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:21.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.899][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:21.900][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:21.902][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.903][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.905][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:21.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:21.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.910][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:21.911][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:21.912][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.914][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.915][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:21.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:21.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.921][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:21.923][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:21.924][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.925][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.927][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:21.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:21.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.939][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:21.942][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:21.945][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.947][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.949][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:21.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:21.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.957][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:21.959][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:21.960][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.961][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:21.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:21.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.969][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:21.971][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:21.972][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.974][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.975][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:21.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:21.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.983][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:21.985][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:21.986][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.987][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.989][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:21.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:21.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:21.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:21.996][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-10-14 11:10:21.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:21.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:22.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:22.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.006][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:22.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:22.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.012][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-10-14 11:10:22.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:22.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.018][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:22.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:22.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:22.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:22.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.032][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-10-14 11:10:22.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:22.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.039][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:22.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:22.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.045][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:22.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:22.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.050][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-10-14 11:10:22.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:22.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.056][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:22.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:22.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:22.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:22.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.067][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-10-14 11:10:22.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:22.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.073][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:22.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:22.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:22.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:22.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.088][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:22.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:22.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.101][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:22.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:22.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.119][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:22.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:22.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:22.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:22.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:22.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:22.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:22.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:22.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:22.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:22.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:22.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:22.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:22.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:22.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:22.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:22.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:22.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:22.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:22.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:22.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:22.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:22.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:22.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:22.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:22.217][self$createEntryFromContent] Accession numbers: 168654592, 168654580, 168653848.
biodb.DEBUG[2023-10-14 11:10:22.219][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:22.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:22.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:22.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:22.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:22.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:22.238][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:22.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:22.241][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.248][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.254][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:22.256][private$selectFields]
biodb.TRACE[2023-10-14 11:10:22.257][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:22.258][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:22.259][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:22.261][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.262][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.263][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.264][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.266][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.267][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.268][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.270][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.271][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:22.272][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:22.273][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.275][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.276][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.277][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.278][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:22.280][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.285][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.291][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.296][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168654592].
biodb.DEBUG[2023-10-14 11:10:22.298][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:22.299][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:22.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:22.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:22.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:22.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:22.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:22.315][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.323][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.328][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:22.330][private$selectFields]
biodb.TRACE[2023-10-14 11:10:22.331][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:22.332][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:22.334][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:22.335][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.336][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.338][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.339][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.340][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.342][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.343][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.344][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.345][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:22.347][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:22.348][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.350][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.351][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.353][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.355][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:22.357][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.366][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.374][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.383][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168654580].
biodb.DEBUG[2023-10-14 11:10:22.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:22.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:22.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:22.400][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:22.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:22.402][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:22.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:22.406][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.412][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.418][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:22.419][private$selectFields]
biodb.TRACE[2023-10-14 11:10:22.420][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:22.421][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:22.423][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:22.424][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.426][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.427][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.428][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.430][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.432][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.434][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.436][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.438][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:22.441][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:22.442][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.444][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.446][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.448][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.450][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:22.452][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.467][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.473][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.479][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168653848].
biodb.DEBUG[2023-10-14 11:10:22.480][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:22.481][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:10:22.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:22.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:22.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:22.526][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:22.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:22.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:22.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:22.566][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:22.569][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:22.571][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9701d2e1a6b096cdfd56943877648611".
biodb.TRACE[2023-10-14 11:10:22.573][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:22.575][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content".
biodb.DEBUG[2023-10-14 11:10:22.577][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:22.579][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:22.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:22.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:22.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:22.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:22.591][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:22.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:22.594][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.599][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.604][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:22.605][private$selectFields]
biodb.TRACE[2023-10-14 11:10:22.606][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:22.607][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:22.609][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:22.610][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.611][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.612][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.613][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.615][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.616][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.617][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.618][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.620][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:22.621][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:22.622][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.623][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.625][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.626][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.627][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:22.628][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.634][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.639][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.644][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168654331].
biodb.DEBUG[2023-10-14 11:10:22.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:22.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:22.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:22.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:22.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:22.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:22.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:22.660][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.665][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.670][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:22.672][private$selectFields]
biodb.TRACE[2023-10-14 11:10:22.673][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:22.674][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:22.675][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:22.676][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.678][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.679][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.680][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.681][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.682][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.684][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.685][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.686][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:22.687][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:22.689][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.690][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.691][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.692][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.693][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:22.695][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.700][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.705][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.710][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168654171].
biodb.DEBUG[2023-10-14 11:10:22.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:22.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:22.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:22.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:22.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:22.724][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:22.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:22.727][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.732][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.737][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:22.739][private$selectFields]
biodb.TRACE[2023-10-14 11:10:22.740][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:22.741][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:22.742][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:22.744][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.745][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.746][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.747][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.749][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.750][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.751][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.752][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.753][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:22.755][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:22.756][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.757][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.758][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.760][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.761][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:22.762][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.767][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.772][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:22.780][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168654102].
biodb.DEBUG[2023-10-14 11:10:22.782][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:22.784][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:10:22.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:22.790][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:22.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:22.800][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:22.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:22.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:22.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:22.843][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:22.847][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:22.849][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ce15c6e17e9ed97ba06e918ccdf7a5ba".
biodb.TRACE[2023-10-14 11:10:22.851][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:22.964][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content".
biodb.DEBUG[2023-10-14 11:10:22.967][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:22.970][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:22.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:22.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:22.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:22.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:22.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:22.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:22.994][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:22.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:22.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.000][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.005][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.006][private$selectFields]
biodb.TRACE[2023-10-14 11:10:23.008][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:23.010][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:23.013][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.015][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.017][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.018][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.020][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.021][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.023][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.024][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.025][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.027][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.028][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.029][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.031][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.032][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.033][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.034][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:23.036][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.041][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.046][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.051][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168653535].
biodb.DEBUG[2023-10-14 11:10:23.052][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:23.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:23.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:23.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:23.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:23.065][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:23.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:23.068][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.073][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.078][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.080][private$selectFields]
biodb.TRACE[2023-10-14 11:10:23.081][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:23.082][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:23.083][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.085][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.086][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.087][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.089][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.090][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.091][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.092][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.094][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.095][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.096][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.097][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.099][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.100][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.101][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.102][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:23.104][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.109][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.114][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.120][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168651635].
biodb.DEBUG[2023-10-14 11:10:23.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:23.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:23.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:23.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:23.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:23.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:23.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:23.137][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.142][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.147][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.148][private$selectFields]
biodb.TRACE[2023-10-14 11:10:23.149][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:23.151][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:23.152][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.153][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.154][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.156][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.157][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.158][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.160][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.161][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.162][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.163][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.165][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.166][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.167][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.168][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.170][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.171][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:23.172][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.177][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.182][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.188][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168651342].
biodb.DEBUG[2023-10-14 11:10:23.189][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:23.190][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:10:23.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:23.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:23.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:23.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:23.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:23.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:23.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:23.277][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:23.281][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:23.283][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2023-10-14 11:10:23.285][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:23.287][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2023-10-14 11:10:23.290][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:23.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:23.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:23.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:23.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:23.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:23.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:23.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:23.307][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.312][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.317][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.319][private$selectFields]
biodb.TRACE[2023-10-14 11:10:23.320][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:23.321][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:23.322][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.324][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.325][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.326][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.327][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.329][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.330][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.331][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.332][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.334][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.335][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.336][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.337][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.339][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.341][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.343][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:23.345][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.355][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.361][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.367][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168534120].
biodb.DEBUG[2023-10-14 11:10:23.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:23.369][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:23.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:23.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:23.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:23.380][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:23.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:23.383][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.388][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.393][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.394][private$selectFields]
biodb.TRACE[2023-10-14 11:10:23.395][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:23.397][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:23.398][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.399][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.401][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.403][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.405][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.407][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.416][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.418][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.420][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.421][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.423][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.424][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.425][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.427][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.428][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.429][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:23.431][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.436][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.441][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.446][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168533548].
biodb.DEBUG[2023-10-14 11:10:23.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:23.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:23.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:23.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:23.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:23.460][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:23.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:23.463][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.468][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.473][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.474][private$selectFields]
biodb.TRACE[2023-10-14 11:10:23.475][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:23.477][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:23.478][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.479][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.480][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.482][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.483][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.484][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.485][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.487][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.488][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.489][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.490][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.492][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.493][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.494][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.496][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.498][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:23.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.505][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.515][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168531246].
biodb.DEBUG[2023-10-14 11:10:23.517][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:23.518][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:10:23.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:23.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:23.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:23.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:23.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:23.534][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:23.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:23.572][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:23.576][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:23.578][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2023-10-14 11:10:23.579][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:23.581][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2023-10-14 11:10:23.584][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:23.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:23.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:23.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:23.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:23.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:23.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:23.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:23.600][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.605][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.610][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.611][private$selectFields]
biodb.TRACE[2023-10-14 11:10:23.612][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:23.614][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:23.615][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.617][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.619][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.620][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.622][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.624][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.625][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.626][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.627][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.629][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.630][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.631][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.632][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.633][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.635][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.636][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:23.637][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.642][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.647][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.652][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168651635].
biodb.DEBUG[2023-10-14 11:10:23.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:23.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:23.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:23.665][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:23.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:23.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:23.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:23.671][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.676][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.681][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.682][private$selectFields]
biodb.TRACE[2023-10-14 11:10:23.683][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:23.685][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:23.686][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.687][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.688][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.689][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.691][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.692][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.693][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.694][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.695][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.697][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.698][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.699][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.700][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.701][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.703][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.704][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:23.705][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.711][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.717][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.723][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168609923].
biodb.DEBUG[2023-10-14 11:10:23.725][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:23.726][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:23.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:23.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:23.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:23.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:23.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:23.740][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.745][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.749][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.750][private$selectFields]
biodb.TRACE[2023-10-14 11:10:23.752][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:23.753][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:23.754][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.756][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.757][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.759][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.760][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.762][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.763][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.765][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.766][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.767][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.769][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.770][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.771][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.772][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.773][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.775][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:23.776][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.781][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.786][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.791][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168608633].
biodb.DEBUG[2023-10-14 11:10:23.792][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:23.793][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:10:23.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:23.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:23.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:23.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:23.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:23.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:23.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:23.889][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:23.893][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:23.895][cch$loadFileContent] Trying to load 1 files from cache: [1]: "897c6c1cf86bb233833a030ee6928dbf".
biodb.TRACE[2023-10-14 11:10:23.897][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:23.899][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content".
biodb.DEBUG[2023-10-14 11:10:23.902][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:23.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:23.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:23.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:23.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:23.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:23.919][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:23.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:23.922][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.927][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.932][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.934][private$selectFields]
biodb.TRACE[2023-10-14 11:10:23.935][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:23.936][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:23.937][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.938][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.940][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.941][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.942][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.943][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.945][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.946][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.947][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.948][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.950][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:23.951][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.952][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.953][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.955][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.956][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:23.957][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.962][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.967][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.973][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168654156].
biodb.DEBUG[2023-10-14 11:10:23.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:23.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:23.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:23.985][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:23.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:23.988][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:23.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:23.990][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:23.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:23.996][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:23.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.001][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:24.002][private$selectFields]
biodb.TRACE[2023-10-14 11:10:24.003][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:24.005][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:24.006][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:24.007][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.009][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.010][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.011][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.012][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.014][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.015][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.016][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.017][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:24.019][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:24.020][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.021][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.023][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.024][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.025][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:24.026][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.032][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.037][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.042][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168653588].
biodb.DEBUG[2023-10-14 11:10:24.044][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:24.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:24.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:24.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:24.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:24.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:24.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:24.059][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.065][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.070][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:24.071][private$selectFields]
biodb.TRACE[2023-10-14 11:10:24.072][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:24.073][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:24.074][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:24.076][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.077][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.078][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.079][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.081][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.082][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.083][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.085][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.086][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:24.087][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:24.088][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.090][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.091][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.092][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.093][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:24.095][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.100][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.106][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.113][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168651976].
biodb.DEBUG[2023-10-14 11:10:24.115][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:24.116][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:10:24.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:24.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:24.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:24.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:24.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:24.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:24.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:24.197][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:24.204][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:24.208][cch$loadFileContent] Trying to load 1 files from cache: [1]: "56a93d3214bbb5417ad13002a40518e8".
biodb.TRACE[2023-10-14 11:10:24.211][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:24.261][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content".
biodb.DEBUG[2023-10-14 11:10:24.264][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:24.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:24.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:24.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:24.277][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:24.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:24.279][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:24.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:24.282][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.287][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.293][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:24.294][private$selectFields]
biodb.TRACE[2023-10-14 11:10:24.296][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:24.297][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:24.298][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:24.300][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.301][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.302][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.304][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.305][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.306][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.308][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.309][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.310][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:24.312][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:24.313][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.314][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.316][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.329][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.331][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:24.333][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.339][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.345][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.350][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168654592].
biodb.DEBUG[2023-10-14 11:10:24.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:24.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:24.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:24.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:24.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:24.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:24.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:24.369][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.375][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.381][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:24.382][private$selectFields]
biodb.TRACE[2023-10-14 11:10:24.383][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:24.384][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:24.386][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:24.387][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.389][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.390][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.392][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.394][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.397][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.399][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.400][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.401][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:24.403][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:24.404][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.405][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.407][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.408][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.409][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:24.410][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.416][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.421][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.427][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168654580].
biodb.DEBUG[2023-10-14 11:10:24.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:24.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:24.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:24.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:24.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:24.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:24.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:24.447][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.454][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.461][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:24.463][private$selectFields]
biodb.TRACE[2023-10-14 11:10:24.466][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:24.467][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:24.468][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:24.469][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.471][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.472][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.473][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.475][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.476][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.477][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.478][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.480][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:24.482][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:24.484][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.485][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.486][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.487][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.489][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:24.491][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.496][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.501][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.507][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168653848].
biodb.DEBUG[2023-10-14 11:10:24.508][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:24.509][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-10-14 11:10:24.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:24.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:24.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:24.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:24.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:24.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:24.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:24.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:24.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:24.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:24.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:24.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:24.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.570][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:24.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:24.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:24.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:24.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:24.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:24.588][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:24.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:24.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:24.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:24.604][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:24.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:24.647][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:24.652][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:10:24.654][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:10:24.656][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2023-10-14 11:10:24.703][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2023-10-14 11:10:24.704][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-10-14 11:10:24.706][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-10-14 11:10:24.708][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2023-10-14 11:10:24.759][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:10:24.763][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content"
biodb.TRACE[2023-10-14 11:10:24.770][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.request"
biodb.DEBUG[2023-10-14 11:10:24.774][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:24.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:24.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:24.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:24.793][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:24.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:24.797][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:24.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:24.802][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.819][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:24.821][private$selectFields]
biodb.TRACE[2023-10-14 11:10:24.823][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:24.825][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:24.827][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:24.829][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.831][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.833][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.835][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.837][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.840][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.842][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.844][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.846][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:24.848][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:24.850][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.852][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.854][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.856][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.858][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:24.860][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.869][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.877][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.886][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168654331].
biodb.DEBUG[2023-10-14 11:10:24.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:24.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:24.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:24.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:24.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:24.908][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:24.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:24.913][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.921][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.942][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:24.944][private$selectFields]
biodb.TRACE[2023-10-14 11:10:24.946][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:24.949][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:24.951][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:24.953][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.955][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.958][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.960][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.962][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.964][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.966][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.968][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.971][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:24.973][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:24.975][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.977][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.979][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.981][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.983][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:24.986][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:24.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:24.994][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:24.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.003][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:25.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:25.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.012][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168654171].
biodb.DEBUG[2023-10-14 11:10:25.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:25.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:25.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:25.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:25.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:25.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:25.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:25.039][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:25.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:25.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.048][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:25.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:25.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.056][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:25.058][private$selectFields]
biodb.TRACE[2023-10-14 11:10:25.060][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:25.062][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:25.064][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:25.066][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:25.069][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:25.071][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.073][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.075][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:25.077][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:25.079][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.081][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.083][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:25.085][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:25.087][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:25.089][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:25.091][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.093][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.096][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:25.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:25.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:25.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.106][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:25.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:25.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.115][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:25.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:25.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.123][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168654156].
biodb.DEBUG[2023-10-14 11:10:25.125][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:25.127][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:10:25.130][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:25.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:25.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:25.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:25.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:25.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:25.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:25.212][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:25.218][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:10:25.220][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:10:25.224][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2023-10-14 11:10:25.277][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2023-10-14 11:10:25.279][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-10-14 11:10:25.282][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-10-14 11:10:25.284][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2023-10-14 11:10:25.330][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:10:25.333][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content"
biodb.TRACE[2023-10-14 11:10:25.338][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.request"
biodb.DEBUG[2023-10-14 11:10:25.342][private$loadEntries] Creating entries from ids [1]: "168653322".
biodb.DEBUG[2023-10-14 11:10:25.343][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:10:25.345][cch$loadFileContent] Trying to load 1 files from cache: [1]: "168653322".
biodb.TRACE[2023-10-14 11:10:25.347][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:10:25.348][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:10:25.350][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:10:25.351][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-10-14 11:10:25.352][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:10:25.354][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2023-10-14 11:10:25.355][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2023-10-14 11:10:25.357][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/168653322/XML".
biodb.DEBUG[2023-10-14 11:10:25.360][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:10:25.361][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:10:25.363][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/168653322/XML".
biodb.TRACE[2023-10-14 11:10:25.511][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/168653322/XML).
biodb.TRACE[2023-10-14 11:10:25.635][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/168653322.xml"
biodb.DEBUG[2023-10-14 11:10:25.638][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:10:25.640][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:10:25.642][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2023-10-14 11:10:25.644][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:25.645][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:25.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:25.656][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:25.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:25.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:25.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:25.663][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:25.664][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:25.666][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.667][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:25.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:25.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.674][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:25.675][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:25.676][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.677][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.679][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:25.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:25.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.685][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:25.686][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:25.687][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.688][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:25.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:25.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.695][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:25.696][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:25.698][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.699][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:25.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:25.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.706][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:25.707][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:25.708][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.709][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:25.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:25.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.716][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:25.717][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:25.718][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.720][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:25.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:25.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.726][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:25.728][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:25.729][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.730][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.732][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:25.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:25.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.737][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:25.738][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:25.739][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.740][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.742][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:25.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:25.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.751][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:25.753][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:25.754][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.755][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.757][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:25.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:25.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.763][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:25.764][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:25.766][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.767][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.769][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:25.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:25.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.775][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:25.776][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:25.777][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.779][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.780][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:25.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:25.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.786][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:25.787][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:25.788][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.789][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:25.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:25.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.797][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:25.798][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:25.799][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.800][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.802][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:25.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:25.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.808][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:25.809][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:25.811][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.812][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.814][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:25.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:25.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.822][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-10-14 11:10:25.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:25.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:25.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:25.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.845][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:25.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:25.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.852][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-10-14 11:10:25.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:25.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:25.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:25.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:25.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:25.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.869][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-10-14 11:10:25.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:25.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.875][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:25.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:25.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:25.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:25.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.885][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-10-14 11:10:25.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:25.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:25.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:25.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.896][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:25.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:25.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.901][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-10-14 11:10:25.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:25.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.907][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:25.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:25.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.912][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:25.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:25.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.918][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:25.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:25.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.923][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:25.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:25.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.928][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:25.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:25.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:25.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:25.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.939][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:25.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:25.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:25.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:25.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:25.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:25.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:25.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:25.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:25.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:25.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:25.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:25.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:25.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:25.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:25.975][self$createEntryFromContent] Accession numbers: 168653322.
biodb.DEBUG[2023-10-14 11:10:25.976][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:25.978][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:25.979][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:25.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:25.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:25.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:25.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:25.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:25.993][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:25.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:25.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:25.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:25.999][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.004][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:26.005][private$selectFields]
biodb.TRACE[2023-10-14 11:10:26.006][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:26.008][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:26.009][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:26.010][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.011][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.013][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.014][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.015][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.016][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.018][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.019][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.020][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:26.022][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:26.023][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.024][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.025][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.026][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.028][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:26.029][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.034][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.039][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.045][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168654162].
biodb.DEBUG[2023-10-14 11:10:26.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:26.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:26.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:26.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:26.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:26.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:26.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:26.062][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.071][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.077][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:26.079][private$selectFields]
biodb.TRACE[2023-10-14 11:10:26.080][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:26.081][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:26.082][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:26.084][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.085][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.086][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.087][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.088][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.090][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.091][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.092][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.093][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:26.095][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:26.096][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.097][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.098][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.100][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.101][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:26.102][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.107][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.112][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.117][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168653535].
biodb.DEBUG[2023-10-14 11:10:26.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:26.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:26.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:26.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:26.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:26.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:26.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:26.134][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.141][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.148][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:26.149][private$selectFields]
biodb.TRACE[2023-10-14 11:10:26.151][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:26.152][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:26.153][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:26.154][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.156][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.157][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.158][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.159][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.161][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.162][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.163][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.164][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:26.166][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:26.167][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.168][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.169][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.171][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.172][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:26.173][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.178][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.183][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.189][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168653322].
biodb.DEBUG[2023-10-14 11:10:26.190][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:26.192][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:10:26.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:26.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:26.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:26.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:26.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:26.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:26.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:26.285][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:26.289][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:26.291][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2023-10-14 11:10:26.293][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:26.295][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2023-10-14 11:10:26.298][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:26.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:26.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:26.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:26.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:26.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:26.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:26.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:26.317][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.322][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.327][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:26.329][private$selectFields]
biodb.TRACE[2023-10-14 11:10:26.330][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:26.331][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:26.332][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:26.333][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.335][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.336][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.337][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.338][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.340][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.341][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.342][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.344][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:26.345][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:26.346][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.348][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.349][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.350][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.351][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:26.353][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.358][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.364][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.369][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168654156].
biodb.DEBUG[2023-10-14 11:10:26.371][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:26.372][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:26.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:26.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:26.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:26.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:26.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:26.387][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.392][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.398][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:26.399][private$selectFields]
biodb.TRACE[2023-10-14 11:10:26.400][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:26.402][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:26.403][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:26.405][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.406][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.407][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.408][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.410][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.411][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.412][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.414][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.415][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:26.417][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:26.418][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.419][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.421][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.422][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.424][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:26.425][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.431][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.436][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.442][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168653588].
biodb.DEBUG[2023-10-14 11:10:26.444][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:26.445][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:26.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:26.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:26.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:26.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:26.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:26.462][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.467][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.473][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:26.475][private$selectFields]
biodb.TRACE[2023-10-14 11:10:26.476][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:26.477][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:26.479][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:26.480][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.482][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.483][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.484][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.485][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.487][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.488][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.489][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.491][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:26.492][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:26.493][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.495][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.496][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.497][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.499][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:26.500][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.506][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.511][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.517][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168651976].
biodb.DEBUG[2023-10-14 11:10:26.518][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:26.519][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:10:26.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:26.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:26.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:26.533][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:26.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:26.536][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:26.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:26.577][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:26.581][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:26.583][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2023-10-14 11:10:26.585][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:26.589][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2023-10-14 11:10:26.591][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:26.593][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:26.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:26.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:26.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:26.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:26.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:26.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:26.610][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.618][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.623][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:26.624][private$selectFields]
biodb.TRACE[2023-10-14 11:10:26.625][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:26.627][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:26.628][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:26.629][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.631][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.632][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.633][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.634][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.636][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.637][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.638][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.640][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:26.641][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:26.642][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.644][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.645][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.646][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.648][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:26.649][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.654][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.660][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.665][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168654162].
biodb.DEBUG[2023-10-14 11:10:26.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:26.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:26.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:26.677][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:26.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:26.680][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:26.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:26.683][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.689][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.702][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:26.704][private$selectFields]
biodb.TRACE[2023-10-14 11:10:26.705][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:26.707][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:26.708][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:26.709][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.711][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.712][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.714][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.715][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.717][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.718][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.719][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.721][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:26.722][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:26.724][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.725][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.726][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.728][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.729][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:26.731][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.736][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.742][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.748][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168652975].
biodb.DEBUG[2023-10-14 11:10:26.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:26.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:26.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:26.761][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:26.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:26.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:26.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:26.766][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.772][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.777][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:26.778][private$selectFields]
biodb.TRACE[2023-10-14 11:10:26.780][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:26.781][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:26.782][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:26.784][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.785][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.786][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.787][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.789][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.790][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.792][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.793][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.794][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:26.795][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:26.797][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.798][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.800][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.801][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.802][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:26.804][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.809][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.814][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:26.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:26.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:26.820][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168651635].
biodb.DEBUG[2023-10-14 11:10:26.821][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:26.823][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:10:26.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:26.858][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:26.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:26.867][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:26.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:26.871][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:26.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:26.922][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:26.926][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:10:26.927][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:10:26.930][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2023-10-14 11:10:26.990][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2023-10-14 11:10:26.992][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-10-14 11:10:26.994][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-10-14 11:10:26.996][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2023-10-14 11:10:28.043][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:10:28.046][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content"
biodb.TRACE[2023-10-14 11:10:28.051][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.request"
biodb.DEBUG[2023-10-14 11:10:28.056][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:28.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:28.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:28.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:28.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:28.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:28.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:28.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:28.092][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.100][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.109][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:28.111][private$selectFields]
biodb.TRACE[2023-10-14 11:10:28.113][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:28.115][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:28.117][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:28.120][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.122][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.124][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.127][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.131][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.133][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.136][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.138][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.140][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:28.142][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:28.144][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.147][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.149][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.151][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.153][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:28.156][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.164][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.174][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.181][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168654156].
biodb.DEBUG[2023-10-14 11:10:28.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:28.184][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:28.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:28.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:28.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:28.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:28.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:28.199][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.204][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.209][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:28.210][private$selectFields]
biodb.TRACE[2023-10-14 11:10:28.211][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:28.213][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:28.214][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:28.215][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.217][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.218][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.219][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.221][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.222][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.223][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.224][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.226][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:28.227][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:28.228][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.230][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.231][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.232][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.233][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:28.235][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.240][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.245][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.250][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168653588].
biodb.DEBUG[2023-10-14 11:10:28.251][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:28.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:28.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:28.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:28.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:28.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:28.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:28.267][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.273][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.278][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:28.279][private$selectFields]
biodb.TRACE[2023-10-14 11:10:28.280][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:28.281][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:28.283][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:28.284][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.285][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.286][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.288][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.296][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.302][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.304][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.306][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.308][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:28.309][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:28.312][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.315][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.317][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.319][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.321][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:28.323][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.330][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.336][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:28.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.342][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168651976].
biodb.DEBUG[2023-10-14 11:10:28.344][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:28.345][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:10:28.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:28.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:28.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:28.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:28.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:28.362][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:28.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:28.401][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:28.405][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:10:28.408][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:10:28.410][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2023-10-14 11:10:28.457][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2023-10-14 11:10:28.459][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-10-14 11:10:28.461][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-10-14 11:10:28.462][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2023-10-14 11:10:28.511][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:10:28.514][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content"
biodb.TRACE[2023-10-14 11:10:28.521][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.request"
biodb.DEBUG[2023-10-14 11:10:28.527][private$loadEntries] Creating entries from ids [1]: "168654363".
biodb.DEBUG[2023-10-14 11:10:28.529][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:10:28.533][cch$loadFileContent] Trying to load 1 files from cache: [1]: "168654363".
biodb.TRACE[2023-10-14 11:10:28.536][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:10:28.538][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:10:28.541][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:10:28.543][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-10-14 11:10:28.546][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:10:28.548][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2023-10-14 11:10:28.550][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2023-10-14 11:10:28.554][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/168654363/XML".
biodb.DEBUG[2023-10-14 11:10:28.558][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:10:28.561][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:10:28.563][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/168654363/XML".
biodb.TRACE[2023-10-14 11:10:28.650][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/168654363/XML).
biodb.TRACE[2023-10-14 11:10:28.735][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/168654363.xml"
biodb.DEBUG[2023-10-14 11:10:28.739][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:10:28.742][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:10:28.745][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2023-10-14 11:10:28.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:28.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:28.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:28.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:28.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:28.770][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:28.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:28.778][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:28.780][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:28.782][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.784][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:28.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:28.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.797][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:28.799][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:28.801][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.804][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.807][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:28.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:28.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.815][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:28.816][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:28.817][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.818][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.820][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:28.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:28.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.826][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:28.827][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:28.829][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.831][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:28.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:28.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.842][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:28.845][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:28.847][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.849][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:28.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:28.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.858][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:28.860][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:28.861][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.863][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:28.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:28.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.880][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:28.882][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:28.885][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.887][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.890][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-10-14 11:10:28.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:28.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.895][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:28.897][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:28.898][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.899][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.901][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:28.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:28.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.912][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:28.914][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:28.916][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.920][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.923][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:28.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:28.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.928][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:28.930][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:28.931][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.932][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:28.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:28.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.941][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:28.944][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:28.945][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.947][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.948][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:28.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:28.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.954][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:28.955][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:28.957][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.958][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-10-14 11:10:28.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:28.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.966][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:28.968][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:28.969][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.971][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.973][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:28.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:28.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.982][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:28.984][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:28.985][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.986][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.988][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:28.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:28.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.994][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-10-14 11:10:28.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:28.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:28.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:28.999][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:29.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:29.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.004][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:29.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:29.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.009][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-10-14 11:10:29.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:29.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.015][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:29.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:29.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.022][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:29.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:29.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.028][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-10-14 11:10:29.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:29.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.033][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:29.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:29.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.039][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:29.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:29.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.046][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-10-14 11:10:29.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:29.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.053][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:29.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:29.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.060][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:29.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:29.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.072][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-10-14 11:10:29.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:29.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:29.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:29.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.086][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:29.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:29.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.093][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:29.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:29.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.100][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.120][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:29.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:29.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:29.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:29.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:29.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:29.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:29.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:29.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:29.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:29.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:29.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:29.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:29.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:29.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:29.186][self$createEntryFromContent] Accession numbers: 168654363.
biodb.DEBUG[2023-10-14 11:10:29.188][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:29.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:29.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:29.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:29.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:29.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:29.206][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:29.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:29.209][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.214][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.220][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:29.221][private$selectFields]
biodb.TRACE[2023-10-14 11:10:29.223][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:29.224][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:29.225][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:29.226][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.227][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.229][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.230][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.231][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.233][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.234][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.235][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.236][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:29.238][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:29.239][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.240][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.242][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.243][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.244][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:29.245][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.250][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.256][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.261][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168654592].
biodb.DEBUG[2023-10-14 11:10:29.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:29.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:29.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:29.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:29.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:29.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:29.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:29.279][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.284][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.289][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:29.290][private$selectFields]
biodb.TRACE[2023-10-14 11:10:29.291][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:29.293][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:29.294][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:29.296][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.297][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.299][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.301][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.302][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.304][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.306][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.307][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.308][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:29.309][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:29.311][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.312][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.313][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.314][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.316][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:29.317][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.323][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.328][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.333][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168654580].
biodb.DEBUG[2023-10-14 11:10:29.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:29.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:29.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:29.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:29.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:29.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:29.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:29.350][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.355][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.361][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:29.362][private$selectFields]
biodb.TRACE[2023-10-14 11:10:29.363][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:29.365][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:29.366][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:29.367][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.369][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.370][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.371][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.373][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.374][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.375][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.376][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.378][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:29.379][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:29.380][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.381][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.383][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.384][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.385][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:29.386][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.391][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.397][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.402][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168654363].
biodb.DEBUG[2023-10-14 11:10:29.403][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:29.404][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:10:29.444][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:29.445][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:29.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:29.456][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:29.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:29.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:29.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:29.497][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:29.574][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:29.577][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8ad32143f99567438eba281a371befbc".
biodb.TRACE[2023-10-14 11:10:29.579][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:29.581][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content".
biodb.DEBUG[2023-10-14 11:10:29.584][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:29.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:29.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:29.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:29.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:29.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:29.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:29.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:29.604][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.609][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.615][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:29.616][private$selectFields]
biodb.TRACE[2023-10-14 11:10:29.617][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:29.618][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:29.620][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:29.621][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.622][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.624][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.625][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.626][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.628][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.629][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.630][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.631][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:29.633][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:29.641][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.643][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.645][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.647][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.648][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:29.650][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.655][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.661][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.666][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168654331].
biodb.DEBUG[2023-10-14 11:10:29.668][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:29.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:29.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:29.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:29.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:29.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:29.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:29.685][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.690][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.696][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:29.697][private$selectFields]
biodb.TRACE[2023-10-14 11:10:29.699][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:29.700][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:29.701][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:29.702][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.704][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.705][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.706][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.708][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.709][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.710][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.712][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.713][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:29.714][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:29.716][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.717][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.718][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.720][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.721][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:29.722][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.728][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.733][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.739][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168654171].
biodb.DEBUG[2023-10-14 11:10:29.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:29.743][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:29.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:29.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:29.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:29.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:29.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:29.760][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.765][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.772][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:29.774][private$selectFields]
biodb.TRACE[2023-10-14 11:10:29.775][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:29.776][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:29.778][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:29.779][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.781][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.782][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.783][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.784][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.786][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.787][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.789][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.790][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:29.792][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:29.793][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.795][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.797][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.800][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.801][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:29.802][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.809][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.814][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.820][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168654156].
biodb.DEBUG[2023-10-14 11:10:29.821][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:29.823][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:10:29.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:29.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:29.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:29.837][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:29.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:29.839][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:29.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:29.882][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:29.886][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:29.888][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ead2a4c6d4c972bfbf7c3e8a0e8299c8".
biodb.TRACE[2023-10-14 11:10:29.890][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:29.905][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content".
biodb.DEBUG[2023-10-14 11:10:29.908][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:29.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:29.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:29.913][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:29.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:29.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:29.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:29.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:29.926][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.932][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.939][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:29.940][private$selectFields]
biodb.TRACE[2023-10-14 11:10:29.942][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:29.944][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:29.945][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:29.947][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.948][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.949][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.951][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.952][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.953][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.955][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.956][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.957][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:29.958][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:29.960][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.961][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.962][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.964][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.965][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:29.967][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.972][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.977][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:29.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:29.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:29.982][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168654162].
biodb.DEBUG[2023-10-14 11:10:29.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:29.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:29.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:29.994][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:29.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:29.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:29.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:29.999][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.004][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.009][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.011][private$selectFields]
biodb.TRACE[2023-10-14 11:10:30.012][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:30.013][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:30.014][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.016][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.017][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.018][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.019][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.021][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.022][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.023][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.024][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.026][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.027][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.028][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.030][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.031][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.032][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.033][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:30.035][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.040][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.045][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.050][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168653535].
biodb.DEBUG[2023-10-14 11:10:30.052][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:30.053][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:30.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:30.062][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:30.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:30.065][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:30.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:30.068][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.073][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.080][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.082][private$selectFields]
biodb.TRACE[2023-10-14 11:10:30.084][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:30.086][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:30.088][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.089][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.098][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.099][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.101][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.104][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.107][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.109][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.111][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.113][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.116][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.117][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.119][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.120][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.121][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.123][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:30.124][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.130][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.141][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168653322].
biodb.DEBUG[2023-10-14 11:10:30.142][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:30.144][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:10:30.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:30.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:30.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:30.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:30.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:30.197][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:30.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:30.238][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:30.242][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:30.243][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2023-10-14 11:10:30.245][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:30.248][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2023-10-14 11:10:30.250][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:30.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:30.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:30.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:30.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:30.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:30.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:30.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:30.269][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.275][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.280][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.281][private$selectFields]
biodb.TRACE[2023-10-14 11:10:30.283][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:30.284][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:30.285][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.286][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.288][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.289][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.290][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.291][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.293][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.294][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.295][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.296][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.298][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.299][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.300][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.302][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.303][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.304][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:30.305][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.310][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.316][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.321][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168654156].
biodb.DEBUG[2023-10-14 11:10:30.322][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:30.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:30.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:30.333][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:30.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:30.335][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:30.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:30.338][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.343][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.348][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.350][private$selectFields]
biodb.TRACE[2023-10-14 11:10:30.351][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:30.352][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:30.353][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.354][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.356][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.357][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.358][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.359][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.361][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.362][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.363][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.364][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.366][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.367][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.368][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.369][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.371][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.372][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:30.373][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.378][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.383][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.389][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168653588].
biodb.DEBUG[2023-10-14 11:10:30.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:30.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:30.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:30.400][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:30.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:30.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:30.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:30.406][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.411][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.416][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.417][private$selectFields]
biodb.TRACE[2023-10-14 11:10:30.418][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:30.420][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:30.421][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.422][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.423][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.424][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.426][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.427][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.428][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.429][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.430][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.432][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.433][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.434][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.435][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.437][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.438][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.439][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:30.440][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.450][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.456][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168651976].
biodb.DEBUG[2023-10-14 11:10:30.457][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:30.458][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:10:30.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:30.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:30.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:30.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:30.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:30.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:30.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:30.517][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:30.522][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:30.524][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2023-10-14 11:10:30.526][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:30.528][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2023-10-14 11:10:30.530][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:30.532][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:30.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:30.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:30.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:30.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:30.546][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:30.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:30.548][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.554][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.559][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.560][private$selectFields]
biodb.TRACE[2023-10-14 11:10:30.561][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:30.563][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:30.564][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.565][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.567][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.568][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.569][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.570][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.571][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.573][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.574][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.575][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.576][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.578][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.579][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.580][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.581][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.583][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:30.584][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.589][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.594][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.599][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168654162].
biodb.DEBUG[2023-10-14 11:10:30.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:30.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:30.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:30.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:30.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:30.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:30.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:30.616][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.621][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.626][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.627][private$selectFields]
biodb.TRACE[2023-10-14 11:10:30.629][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:30.630][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:30.631][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.632][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.634][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.635][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.636][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.637][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.639][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.640][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.641][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.642][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.644][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.645][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.646][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.647][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.649][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.650][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:30.651][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.656][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.661][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.667][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168652975].
biodb.DEBUG[2023-10-14 11:10:30.668][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:30.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:30.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:30.678][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:30.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:30.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:30.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:30.684][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.689][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.694][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.695][private$selectFields]
biodb.TRACE[2023-10-14 11:10:30.696][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:30.697][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:30.699][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.700][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.701][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.702][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.704][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.705][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.706][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.707][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.709][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.710][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.711][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.712][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.714][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.715][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.716][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.717][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:30.719][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.724][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.731][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.738][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168651635].
biodb.DEBUG[2023-10-14 11:10:30.740][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:30.741][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:10:30.784][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:30.786][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:30.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:30.797][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:30.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:30.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:30.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:30.849][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:30.853][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:30.855][cch$loadFileContent] Trying to load 1 files from cache: [1]: "93b38cb571769a97b3321f7f5a86241a".
biodb.TRACE[2023-10-14 11:10:30.857][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:30.859][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content".
biodb.DEBUG[2023-10-14 11:10:30.862][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:30.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:30.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:30.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:30.874][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:30.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:30.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:30.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:30.879][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.884][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.889][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.890][private$selectFields]
biodb.TRACE[2023-10-14 11:10:30.891][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:30.892][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:30.894][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.895][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.896][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.897][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.899][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.900][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.901][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.902][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.904][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.905][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.906][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.907][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.909][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.910][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.911][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.912][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:30.914][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.919][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.930][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168654156].
biodb.DEBUG[2023-10-14 11:10:30.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:30.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:30.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:30.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:30.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:30.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:30.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:30.957][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.968][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.969][private$selectFields]
biodb.TRACE[2023-10-14 11:10:30.970][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:30.972][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:30.973][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.974][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.976][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.977][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.978][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.979][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.981][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.982][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.983][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.985][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.986][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:30.987][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.989][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.990][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.991][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.992][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:30.994][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:30.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:30.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:30.999][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.004][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.009][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168653588].
biodb.DEBUG[2023-10-14 11:10:31.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:31.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:31.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:31.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:31.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:31.023][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:31.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:31.026][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.031][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.036][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:31.037][private$selectFields]
biodb.TRACE[2023-10-14 11:10:31.039][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:31.040][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:31.041][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:31.042][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.044][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.045][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.046][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.047][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.049][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.050][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.051][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.053][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:31.054][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:31.055][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.057][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.058][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.059][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.060][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:31.062][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.067][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.072][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.077][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168651976].
biodb.DEBUG[2023-10-14 11:10:31.078][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:31.080][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:10:31.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:31.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:31.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:31.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:31.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:31.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:31.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:31.135][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:31.139][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:31.141][cch$loadFileContent] Trying to load 1 files from cache: [1]: "405cf707472983a89dc9e0092ca888ad".
biodb.TRACE[2023-10-14 11:10:31.143][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:31.145][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content".
biodb.DEBUG[2023-10-14 11:10:31.148][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:31.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:31.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:31.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:31.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:31.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:31.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:31.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:31.166][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.171][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.176][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:31.177][private$selectFields]
biodb.TRACE[2023-10-14 11:10:31.178][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:31.179][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:31.181][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:31.182][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.183][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.185][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.186][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.187][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.188][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.190][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.191][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.192][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:31.193][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:31.195][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.196][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.197][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.198][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.200][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:31.201][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.206][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.211][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.216][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168654592].
biodb.DEBUG[2023-10-14 11:10:31.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:31.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:31.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:31.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:31.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:31.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:31.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:31.235][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.240][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.246][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:31.248][private$selectFields]
biodb.TRACE[2023-10-14 11:10:31.249][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:31.250][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:31.251][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:31.252][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.254][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.255][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.256][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.258][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.259][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.261][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.262][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.263][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:31.265][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:31.266][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.267][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.268][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.270][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.271][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:31.272][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.277][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.283][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.288][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168654580].
biodb.DEBUG[2023-10-14 11:10:31.289][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:31.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:31.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:31.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:31.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:31.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:31.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:31.305][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.310][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.317][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:31.319][private$selectFields]
biodb.TRACE[2023-10-14 11:10:31.320][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:31.321][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:31.323][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:31.324][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.326][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.327][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.328][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.330][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.331][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.332][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.333][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.335][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:31.336][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-10-14 11:10:31.337][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.338][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.340][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.341][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.342][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-10-14 11:10:31.344][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.349][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.354][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.360][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [168654363].
biodb.DEBUG[2023-10-14 11:10:31.362][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:31.370][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-10-14 11:10:31.401][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-10-14 11:10:31.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-10-14 11:10:31.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.407][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-10-14 11:10:31.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-10-14 11:10:31.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-10-14 11:10:31.422][biodb::testThat]
biodb.INFO [2023-10-14 11:10:31.423][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2023-10-14 11:10:31.424][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:10:31.426][biodb::testThat]
biodb.TRACE[2023-10-14 11:10:31.430][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-10-14 11:10:31.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-10-14 11:10:31.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.435][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-10-14 11:10:31.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-10-14 11:10:31.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:31.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:31.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:31.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:31.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.450][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:31.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:31.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:31.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:31.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:31.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:31.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:31.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:31.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:31.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:31.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:31.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:31.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:31.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:31.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:31.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:31.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:31.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:31.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:31.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:31.535][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:31.538][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:31.540][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2023-10-14 11:10:31.542][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:31.544][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2023-10-14 11:10:31.546][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:31.548][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:31.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:31.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:31.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:31.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:31.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:31.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:31.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:31.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:31.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:31.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:31.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.573][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:31.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:31.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:31.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:31.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.582][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:31.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:31.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.587][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:31.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:31.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.592][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:31.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:31.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:31.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:31.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.602][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:31.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:31.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:31.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:31.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:31.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:31.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.616][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:31.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:31.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.621][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:31.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:31.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.626][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:31.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:31.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.631][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:31.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:31.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:31.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:31.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.640][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:31.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:31.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:31.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:31.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.650][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:31.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:31.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.654][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:31.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:31.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:31.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:31.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:31.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:31.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:31.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:31.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:31.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:31.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.678][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:31.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:31.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.683][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:31.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:31.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.688][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.693][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.697][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:31.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:31.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.702][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:31.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:31.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.707][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:31.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:31.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.712][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:31.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:31.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.717][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:31.718][private$selectFields]
biodb.TRACE[2023-10-14 11:10:31.719][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:31.720][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:31.721][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:31.723][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:31.724][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:31.725][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.726][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.727][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:31.729][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:31.730][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.731][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.732][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:31.733][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:31.735][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.736][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.737][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:31.738][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:31.739][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.740][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.742][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:31.743][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:31.744][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.745][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.746][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:31.748][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:31.749][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.750][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.751][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:31.752][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:31.753][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.755][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.756][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:31.757][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:31.765][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.767][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.768][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:31.770][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:31.771][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.772][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.773][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:31.775][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:31.776][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.777][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.778][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:31.779][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:31.781][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.782][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.783][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:31.784][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:31.785][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.787][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.788][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:31.789][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:31.790][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.791][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.793][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.794][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.795][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.796][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.797][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:31.799][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:31.800][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.801][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.802][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:31.804][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:31.805][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.806][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.807][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:31.808][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:31.810][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.811][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.812][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:31.813][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:31.814][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.816][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.817][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:31.818][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:31.819][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.821][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.822][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:31.823][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:31.825][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.826][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.827][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:31.828][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:31.829][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.830][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.832][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:31.833][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:31.834][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.835][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.836][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:31.838][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:31.839][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.840][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.841][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:31.842][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:31.843][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.845][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.846][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:31.847][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:31.848][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.849][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.851][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:31.852][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:31.853][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.854][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.855][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:31.857][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:31.858][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.859][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.860][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:31.861][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:31.862][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.864][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.865][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:31.866][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:31.868][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.869][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.870][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.871][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.873][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.874][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.875][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:31.876][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:31.877][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.879][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.880][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:31.881][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:31.882][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.883][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.885][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:31.886][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:31.887][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:31.888][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:31.889][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.891][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.892][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:31.893][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:31.894][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.895][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.896][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:31.898][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:31.899][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.900][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.901][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:31.902][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:31.904][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.905][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.906][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:31.907][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:31.908][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.909][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.911][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:31.912][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:31.913][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.915][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.916][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:31.917][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:31.918][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.920][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.921][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:31.922][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:31.923][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.925][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.926][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:31.927][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:31.928][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.929][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.931][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:31.932][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:31.933][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.934][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.935][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:31.937][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:31.938][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.939][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.940][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:31.941][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:31.942][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.944][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.945][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:31.946][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:31.947][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.948][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.950][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.951][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:31.952][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.953][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.954][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:31.955][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:31.957][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.958][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.959][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:31.961][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:31.962][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.963][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.965][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-10-14 11:10:31.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:31.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:31.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:31.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:31.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:31.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:31.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.981][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:31.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:31.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.986][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:31.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:31.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.991][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:31.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:31.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:31.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:31.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:31.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:31.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.000][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:32.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:32.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:32.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:32.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:32.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:32.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.016][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:32.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:32.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.021][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:32.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:32.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.026][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:32.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:32.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.031][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:32.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:32.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:32.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:32.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.040][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:32.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:32.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.045][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:32.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:32.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.050][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:32.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:32.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.055][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:32.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:32.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.060][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:32.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:32.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.065][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:32.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:32.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:32.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:32.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:32.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:32.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:32.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:32.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.085][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:32.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:32.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:32.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:32.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.095][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:32.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:32.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.100][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:32.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:32.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.105][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:32.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:32.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.110][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:32.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:32.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:32.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:32.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:32.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:32.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:32.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:32.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:32.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:32.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:32.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:32.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:32.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:32.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.155][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:32.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:32.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.162][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:32.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:32.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.167][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:32.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:32.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.172][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:32.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:32.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.177][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:32.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:32.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.183][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:32.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:32.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.188][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:32.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:32.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.193][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:32.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:32.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.198][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:32.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:32.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.204][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:32.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:32.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.209][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:32.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:32.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.214][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:32.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:32.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.228][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [168534120, [(2-cyanophenyl)methyleneamino]thiourea, [(2-cyanophenyl)methylideneamino]thiourea, [(2-cyanophenyl)methylideneamino]thiourea, 1-[(2-cyanophenyl)methylideneamino]thiourea, ...].
biodb.DEBUG[2023-10-14 11:10:32.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:32.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:32.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:32.240][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:32.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:32.242][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:32.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:32.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:32.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:32.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:32.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:32.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.255][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:32.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:32.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:32.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:32.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:32.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:32.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:32.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:32.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.275][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:32.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:32.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:32.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:32.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:32.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:32.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.290][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:32.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:32.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.295][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:32.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:32.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.300][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:32.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:32.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.305][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:32.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:32.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.310][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:32.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:32.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:32.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:32.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:32.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:32.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.325][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:32.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:32.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.330][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:32.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:32.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.335][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:32.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:32.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.340][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:32.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:32.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.345][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:32.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:32.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:32.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:32.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:32.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:32.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:32.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:32.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.365][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:32.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:32.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.370][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:32.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:32.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.375][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:32.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:32.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.380][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:32.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:32.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.385][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:32.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:32.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.390][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:32.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:32.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.395][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:32.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:32.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.400][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:32.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:32.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.404][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:32.405][private$selectFields]
biodb.TRACE[2023-10-14 11:10:32.407][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:32.408][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:32.409][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:32.410][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:32.412][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:32.413][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.414][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.415][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:32.416][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:32.417][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.419][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.420][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:32.421][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:32.422][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.423][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.425][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:32.426][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:32.427][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.428][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.429][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:32.431][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:32.432][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.433][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.434][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:32.436][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:32.437][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.438][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.439][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:32.440][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:32.442][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.443][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.444][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:32.445][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:32.446][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.448][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.449][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:32.450][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:32.451][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.452][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.454][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:32.455][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:32.456][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.457][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.459][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:32.460][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:32.461][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.462][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.463][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:32.465][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:32.466][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.467][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.469][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:32.471][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:32.472][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.474][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.475][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:32.477][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:32.478][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.479][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.480][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:32.482][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:32.483][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.484][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.485][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:32.486][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:32.488][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.489][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.490][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:32.491][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:32.493][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.494][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.495][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:32.496][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:32.497][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.498][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.500][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:32.501][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:32.502][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.503][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.504][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:32.506][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:32.507][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.508][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.509][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:32.510][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:32.512][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.513][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.514][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:32.515][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:32.516][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.517][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.519][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:32.520][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:32.521][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.522][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.523][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:32.525][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:32.526][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.527][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.528][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:32.530][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:32.531][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.532][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.533][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:32.534][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:32.535][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.537][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.538][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:32.546][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:32.548][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.550][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.551][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:32.553][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:32.554][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.555][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.556][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:32.558][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:32.559][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.560][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.561][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:32.563][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:32.564][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.565][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.566][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:32.568][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:32.569][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.570][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.571][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:32.573][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:32.574][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.575][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.577][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:32.578][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:32.579][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:32.581][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:32.582][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.583][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.584][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:32.586][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:32.587][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.588][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.589][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:32.591][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:32.592][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.593][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.594][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:32.596][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:32.597][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.598][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.600][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:32.601][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:32.602][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.603][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.605][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:32.606][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:32.607][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.608][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.609][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:32.611][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:32.612][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.613][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.614][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:32.616][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:32.617][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.618][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.619][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:32.620][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:32.622][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.623][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.624][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:32.625][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:32.626][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.628][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.629][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:32.630][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:32.632][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.633][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.634][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:32.635][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:32.637][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.638][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.639][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:32.641][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:32.642][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.643][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.644][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:32.646][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:32.647][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.648][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.649][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:32.650][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:32.652][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.653][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.654][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:32.656][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:32.657][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.658][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.659][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-10-14 11:10:32.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:32.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:32.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:32.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:32.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:32.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:32.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.676][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:32.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:32.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.681][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:32.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:32.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.686][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:32.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:32.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.692][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:32.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:32.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.697][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:32.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:32.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:32.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:32.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.707][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:32.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:32.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.712][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:32.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:32.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:32.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:32.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:32.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:32.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.728][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:32.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:32.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:32.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:32.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.738][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:32.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:32.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.743][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:32.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:32.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.748][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:32.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:32.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.754][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:32.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:32.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.759][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:32.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:32.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.764][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:32.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:32.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.769][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:32.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:32.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.774][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:32.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:32.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.782][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:32.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:32.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:32.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:32.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.792][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:32.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:32.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:32.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:32.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.802][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:32.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:32.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.807][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:32.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:32.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.814][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:32.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:32.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:32.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:32.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:32.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:32.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:32.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:32.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:32.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:32.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.843][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:32.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:32.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:32.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:32.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.859][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:32.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:32.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.864][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:32.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:32.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.869][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:32.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:32.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.875][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:32.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:32.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.880][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:32.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:32.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.885][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:32.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:32.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.890][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:32.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:32.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.895][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:32.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:32.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.900][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:32.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:32.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.906][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:32.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:32.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.912][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:32.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:32.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.916][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:32.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:32.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.929][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [168533548, (indolin-5-ylmethyleneamino)urea, (2,3-dihydro-1H-indol-5-ylmethylideneamino)urea, (2,3-dihydro-1H-indol-5-ylmethylideneamino)urea, 1-(2,3-dihydro-1H-indol-5-ylmethylideneamino)urea, ...].
biodb.DEBUG[2023-10-14 11:10:32.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:32.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:32.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:32.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:32.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:32.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:32.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:32.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:32.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:32.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:32.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:32.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.966][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:32.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:32.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:32.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:32.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:32.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:32.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.982][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:32.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:32.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.988][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:32.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:32.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:32.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:32.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:32.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:32.999][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:33.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:33.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.006][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:33.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:33.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:33.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:33.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:33.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:33.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.025][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:33.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:33.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.029][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:33.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:33.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.035][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:33.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:33.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.040][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:33.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:33.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:33.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:33.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:33.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:33.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.056][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:33.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:33.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.061][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:33.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:33.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:33.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:33.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.072][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:33.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:33.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:33.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:33.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:33.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:33.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.088][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:33.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:33.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.093][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:33.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:33.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:33.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:33.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.104][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:33.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:33.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.109][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:33.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:33.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.114][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:33.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:33.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.120][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:33.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:33.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.126][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:33.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:33.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.131][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:33.132][private$selectFields]
biodb.TRACE[2023-10-14 11:10:33.133][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:33.135][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:33.136][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:33.137][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:33.138][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:33.140][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.141][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.142][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:33.143][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:33.144][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.146][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.147][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:33.148][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:33.149][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.150][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.152][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:33.153][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:33.154][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.155][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.157][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:33.158][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:33.159][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.160][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.162][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:33.163][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:33.164][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.165][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.166][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:33.168][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:33.169][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.171][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.172][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:33.174][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:33.176][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.178][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.180][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:33.182][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:33.184][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.186][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.188][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:33.189][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:33.190][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.192][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.193][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:33.194][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:33.195][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.197][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.198][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:33.199][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:33.200][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.201][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.203][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:33.204][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:33.205][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.207][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.208][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:33.209][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:33.211][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.212][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.213][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:33.214][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:33.216][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.217][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.218][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:33.219][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:33.221][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.222][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.223][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:33.224][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:33.226][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.227][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.228][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:33.229][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:33.231][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.232][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.234][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:33.236][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:33.238][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.240][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.241][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:33.242][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:33.243][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.244][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.246][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:33.247][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:33.248][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.249][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.251][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:33.252][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:33.253][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.254][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.255][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:33.257][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:33.258][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.259][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.260][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:33.262][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:33.263][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.264][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.265][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:33.266][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:33.268][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.269][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.270][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:33.271][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:33.273][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.274][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.275][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:33.276][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:33.277][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.278][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.280][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:33.281][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:33.282][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.283][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.285][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:33.286][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:33.287][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.288][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.290][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:33.291][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:33.292][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.294][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.295][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:33.296][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:33.297][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.299][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.300][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:33.301][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:33.302][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.303][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.305][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:33.306][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:33.307][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:33.308][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:33.310][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.311][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.312][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:33.313][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:33.315][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.316][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.317][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:33.319][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:33.321][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.322][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.324][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:33.325][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:33.327][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.328][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.329][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:33.331][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:33.332][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.333][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.334][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:33.336][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:33.337][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.338][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.339][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:33.342][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:33.343][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.344][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.345][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:33.347][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:33.348][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.351][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.352][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:33.353][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:33.355][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.356][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.357][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:33.359][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:33.360][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.361][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.362][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:33.364][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:33.366][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.368][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.371][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:33.373][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:33.374][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.375][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.386][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:33.389][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:33.390][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.392][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.394][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:33.395][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:33.396][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.398][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.399][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:33.400][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:33.402][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.403][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.404][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:33.405][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:33.407][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.408][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.409][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-10-14 11:10:33.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:33.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:33.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:33.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:33.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:33.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:33.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:33.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:33.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.432][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:33.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:33.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:33.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:33.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:33.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:33.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:33.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:33.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:33.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:33.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.467][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:33.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:33.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:33.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:33.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.477][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:33.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:33.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:33.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:33.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.488][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:33.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:33.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.497][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:33.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:33.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.506][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:33.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:33.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.512][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:33.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:33.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:33.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:33.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.523][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:33.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:33.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.529][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:33.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:33.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.534][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:33.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:33.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.540][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:33.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:33.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.545][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:33.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:33.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.550][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:33.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:33.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.556][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:33.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:33.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.561][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:33.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:33.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.567][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:33.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:33.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.572][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:33.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:33.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.578][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:33.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:33.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.583][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:33.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:33.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:33.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:33.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:33.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:33.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:33.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:33.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:33.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:33.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:33.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:33.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:33.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:33.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.620][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:33.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:33.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.625][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:33.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:33.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.630][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:33.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:33.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.637][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:33.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:33.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.642][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:33.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:33.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.647][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:33.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:33.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.653][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:33.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:33.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.658][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:33.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:33.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.663][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:33.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:33.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.670][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:33.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:33.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.676][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:33.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:33.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.683][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:33.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:33.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.695][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [168531246, 4-(thiadiazol-4-yl)benzaldehyde hydrazone, 4-(4-thiadiazolyl)benzaldehyde hydrazone, [4-(thiadiazol-4-yl)phenyl]methylidenehydrazine, [4-(1,2,3-thiadiazol-4-yl)phenyl]methylidenediazane, ...].
biodb.DEBUG[2023-10-14 11:10:33.697][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:33.698][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:10:33.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:33.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:33.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:33.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:33.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:33.729][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:33.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:33.789][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:33.795][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:33.798][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2023-10-14 11:10:33.801][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:33.805][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2023-10-14 11:10:33.809][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:33.812][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:33.814][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:33.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:33.828][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:33.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:33.833][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:33.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:33.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:33.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:33.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:33.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:33.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:33.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:33.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:33.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:33.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:33.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:33.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.892][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:33.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:33.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:33.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:33.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.910][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:33.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:33.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:33.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:33.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.927][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:33.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:33.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.936][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:33.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:33.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.945][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:33.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:33.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.951][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:33.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:33.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.956][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:33.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:33.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.961][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:33.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:33.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.967][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:33.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:33.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:33.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:33.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.980][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:33.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:33.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.989][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:33.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:33.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:33.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:33.997][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:33.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:34.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:34.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:34.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:34.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:34.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:34.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:34.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:34.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:34.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.029][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:34.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:34.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.034][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:34.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:34.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.040][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:34.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:34.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.048][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:34.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:34.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.057][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:34.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:34.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.066][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:34.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:34.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.074][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:34.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:34.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.082][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:34.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:34.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.089][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:34.091][private$selectFields]
biodb.TRACE[2023-10-14 11:10:34.092][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:34.094][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:34.096][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:34.098][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:34.100][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:34.102][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.104][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.106][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:34.109][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:34.110][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.112][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.113][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:34.116][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:34.118][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.120][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.123][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:34.125][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:34.128][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.130][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.132][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:34.135][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:34.137][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.139][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.142][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:34.144][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:34.147][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.148][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.150][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:34.153][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:34.155][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.156][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.158][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:34.159][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:34.161][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.163][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.164][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:34.166][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:34.169][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.171][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.173][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:34.176][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:34.178][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.180][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.181][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:34.184][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:34.185][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.187][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.190][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:34.192][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:34.194][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.196][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.198][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:34.199][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:34.202][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.204][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.205][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:34.207][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:34.209][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.211][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.213][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:34.215][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:34.216][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.218][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.220][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:34.221][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:34.222][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.223][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.225][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:34.226][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:34.227][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.229][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.230][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:34.231][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:34.233][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.234][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.235][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:34.237][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:34.239][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.240][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.241][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:34.243][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:34.244][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.245][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.247][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:34.248][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:34.251][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.253][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.256][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:34.258][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:34.260][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.262][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.263][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:34.264][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:34.265][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.267][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.268][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:34.269][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:34.270][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.271][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.273][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:34.274][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:34.275][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.276][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.277][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:34.279][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:34.280][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.281][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.282][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:34.284][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:34.285][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.286][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.287][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:34.288][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:34.290][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.291][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.292][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:34.293][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:34.294][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.295][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.297][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:34.298][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:34.299][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.300][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.301][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:34.303][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:34.304][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.305][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.306][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:34.307][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:34.309][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.310][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.311][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:34.312][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:34.314][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:34.316][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:34.317][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.318][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.319][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:34.321][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:34.322][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.323][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.324][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:34.325][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:34.327][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.328][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.329][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:34.330][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:34.332][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.333][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.334][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:34.335][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:34.336][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.338][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.339][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:34.340][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:34.341][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.342][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.344][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:34.345][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:34.346][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.347][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.348][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:34.350][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:34.351][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.352][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.353][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:34.355][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:34.356][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.357][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.359][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:34.360][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:34.361][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.362][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.363][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:34.365][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:34.366][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.367][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.368][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:34.370][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:34.371][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.372][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.373][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:34.374][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:34.376][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.377][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.378][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:34.379][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:34.380][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.382][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.383][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:34.384][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:34.385][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.386][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.388][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:34.389][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:34.397][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.399][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.401][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-10-14 11:10:34.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:34.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:34.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:34.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:34.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:34.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:34.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.418][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:34.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:34.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:34.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:34.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:34.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:34.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:34.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:34.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.438][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:34.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:34.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.443][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:34.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:34.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:34.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:34.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:34.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:34.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.458][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:34.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:34.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:34.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:34.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:34.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:34.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.474][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:34.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:34.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:34.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:34.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:34.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:34.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:34.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:34.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.494][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:34.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:34.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.499][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:34.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:34.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.503][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:34.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:34.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.509][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:34.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:34.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.513][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:34.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:34.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.518][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:34.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:34.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.523][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:34.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:34.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.528][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:34.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:34.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.533][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:34.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:34.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.538][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:34.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:34.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.543][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:34.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:34.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.548][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:34.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:34.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:34.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:34.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:34.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:34.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:34.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:34.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.568][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:34.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:34.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:34.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:34.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.578][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:34.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:34.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.583][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:34.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:34.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.588][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:34.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:34.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.593][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:34.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:34.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.598][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:34.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:34.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.603][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:34.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:34.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.608][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:34.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:34.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.613][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:34.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:34.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.618][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:34.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:34.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.624][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:34.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:34.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.633][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:34.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:34.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.642][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:34.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:34.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.648][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:34.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:34.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.662][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [168651635, N-(4,5-dimethoxy-2-nitro-phenyl)formamide, N-(4,5-dimethoxy-2-nitrophenyl)formamide, N-(4,5-dimethoxy-2-nitrophenyl)formamide, N-(4,5-dimethoxy-2-nitro-phenyl)methanamide, ...].
biodb.DEBUG[2023-10-14 11:10:34.663][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:34.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:34.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:34.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:34.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:34.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:34.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:34.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:34.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:34.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:34.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:34.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.688][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:34.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:34.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:34.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:34.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.698][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:34.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:34.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.703][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:34.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:34.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.709][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:34.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:34.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:34.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:34.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:34.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:34.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:34.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:34.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:34.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:34.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.737][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:34.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:34.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.743][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:34.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:34.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.748][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:34.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:34.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.754][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:34.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:34.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.759][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:34.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:34.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.765][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:34.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:34.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.770][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:34.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:34.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.775][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:34.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:34.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.782][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:34.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:34.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:34.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:34.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:34.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:34.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:34.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:34.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:34.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:34.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.821][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:34.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:34.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.826][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:34.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:34.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.831][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:34.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:34.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.836][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:34.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:34.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.841][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:34.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:34.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.846][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:34.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:34.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.851][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:34.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:34.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.857][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:34.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:34.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.862][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:34.863][private$selectFields]
biodb.TRACE[2023-10-14 11:10:34.865][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:34.866][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:34.867][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:34.868][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:34.869][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:34.870][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.872][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.873][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:34.874][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:34.875][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.876][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.878][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:34.879][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:34.880][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.881][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.882][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:34.884][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:34.885][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.886][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.887][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:34.888][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:34.890][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.891][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.892][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:34.893][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:34.894][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.896][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.897][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:34.898][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:34.899][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.900][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.902][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:34.903][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:34.904][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.905][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.906][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:34.908][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:34.909][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.910][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.911][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:34.912][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:34.914][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.915][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.916][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:34.918][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:34.919][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.921][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.922][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:34.924][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:34.925][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.926][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.928][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:34.929][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:34.930][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.931][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.933][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:34.934][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:34.936][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.937][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.938][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:34.940][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:34.941][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.942][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.943][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:34.945][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:34.946][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.947][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.949][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:34.950][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:34.951][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.953][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.954][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:34.955][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:34.957][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.958][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.959][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:34.960][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:34.962][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.963][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.964][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:34.965][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:34.967][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.968][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.970][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:34.971][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:34.972][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.974][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.975][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:34.976][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:34.977][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.979][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.980][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:34.981][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:34.982][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.984][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.985][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:34.986][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:34.987][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.989][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.990][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:34.991][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:34.992][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.994][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:34.995][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:34.996][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:34.998][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:34.999][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.000][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:35.001][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:35.002][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.004][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.005][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:35.006][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:35.007][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.009][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.010][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:35.011][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:35.012][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.014][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.015][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:35.016][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:35.017][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.019][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.020][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:35.021][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:35.022][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.024][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.025][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:35.026][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:35.027][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.029][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.030][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:35.031][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:35.032][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:35.034][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:35.035][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.036][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.037][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:35.039][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:35.040][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.042][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.044][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:35.046][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:35.048][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.050][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.052][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:35.054][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:35.056][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.057][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.058][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:35.059][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:35.061][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.062][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.063][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:35.065][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:35.066][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.067][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.068][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:35.070][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:35.071][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.072][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.074][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:35.075][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:35.076][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.077][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.079][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:35.080][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:35.081][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.082][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.084][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:35.085][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:35.086][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.087][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.089][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:35.090][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:35.091][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.092][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.094][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:35.095][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:35.096][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.097][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.099][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:35.100][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:35.101][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.102][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.103][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:35.105][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:35.106][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.107][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.109][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:35.110][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:35.111][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.113][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.114][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:35.115][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:35.117][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.118][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.119][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-10-14 11:10:35.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:35.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:35.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:35.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:35.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:35.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:35.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:35.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:35.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.141][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:35.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:35.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:35.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:35.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:35.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:35.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:35.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:35.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:35.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:35.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.167][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:35.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:35.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.172][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:35.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:35.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:35.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:35.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.182][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:35.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:35.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.187][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:35.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:35.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.192][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:35.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:35.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.198][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:35.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:35.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.203][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:35.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:35.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:35.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:35.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.221][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:35.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:35.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.227][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:35.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:35.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.232][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:35.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:35.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.237][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:35.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:35.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.242][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:35.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:35.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.248][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:35.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:35.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.253][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:35.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:35.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.258][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:35.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:35.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:35.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:35.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.269][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:35.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:35.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.275][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:35.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:35.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.280][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:35.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:35.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:35.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:35.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:35.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:35.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:35.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:35.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:35.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:35.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:35.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:35.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.314][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:35.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:35.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.322][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:35.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:35.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.330][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:35.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:35.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.336][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:35.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:35.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.343][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:35.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:35.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.348][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:35.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:35.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.353][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:35.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:35.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.358][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:35.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:35.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.363][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:35.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:35.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.369][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:35.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:35.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.374][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:35.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:35.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.379][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:35.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:35.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.384][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:35.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:35.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.397][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [168609923, 2-(3,5-dihydroxyanilino)ethene-1,1,2-tricarbonitrile, 2-(3,5-dihydroxyanilino)ethene-1,1,2-tricarbonitrile, 2-(3,5-dihydroxyanilino)ethene-1,1,2-tricarbonitrile, 2-[[3,5-bis(oxidanyl)phenyl]amino]ethene-1,1,2-tricarbonitrile, ...].
biodb.DEBUG[2023-10-14 11:10:35.398][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:35.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:35.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:35.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:35.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:35.415][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:35.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:35.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:35.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:35.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:35.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:35.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.432][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:35.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:35.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.438][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:35.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:35.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.445][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:35.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:35.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.452][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:35.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:35.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.458][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:35.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:35.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.465][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:35.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:35.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.471][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:35.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:35.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.478][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:35.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:35.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.485][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:35.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:35.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.491][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:35.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:35.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.498][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:35.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:35.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.503][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:35.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:35.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.511][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:35.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:35.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:35.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:35.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.522][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:35.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:35.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:35.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:35.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.534][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:35.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:35.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.539][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:35.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:35.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:35.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:35.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:35.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:35.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:35.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:35.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:35.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:35.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.566][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:35.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:35.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.571][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:35.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:35.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.577][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:35.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:35.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.585][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:35.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:35.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.590][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:35.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:35.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.595][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:35.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:35.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.600][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:35.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:35.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.606][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:35.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:35.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.612][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:35.613][private$selectFields]
biodb.TRACE[2023-10-14 11:10:35.614][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:35.616][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:35.617][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:35.618][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:35.619][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:35.621][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.622][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.623][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:35.624][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:35.626][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.627][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.628][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:35.629][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:35.631][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.632][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.633][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:35.634][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:35.635][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.637][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.638][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:35.639][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:35.641][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.642][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.643][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:35.645][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:35.646][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.647][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.648][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:35.649][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:35.651][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.677][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.679][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:35.681][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:35.683][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.684][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.686][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:35.687][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:35.689][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.690][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.691][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:35.693][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:35.694][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.695][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.696][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:35.698][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:35.699][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.700][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.701][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:35.703][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:35.705][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.707][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.709][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:35.711][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:35.713][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.714][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.715][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:35.716][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:35.718][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.719][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.720][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:35.721][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:35.723][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.724][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.725][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:35.727][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:35.728][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.729][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.730][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:35.732][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:35.733][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.734][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.736][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:35.737][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:35.738][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.739][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.740][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:35.742][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:35.743][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.744][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.745][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:35.747][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:35.748][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.749][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.751][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:35.752][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:35.753][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.754][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.756][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:35.757][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:35.758][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.759][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.761][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:35.762][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:35.763][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.765][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.766][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:35.767][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:35.768][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.769][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.771][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:35.772][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:35.773][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.774][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.776][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:35.777][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:35.778][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.779][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.781][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:35.782][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:35.783][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.784][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.786][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:35.787][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:35.788][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.789][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.790][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:35.792][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:35.793][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.794][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.795][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:35.797][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:35.798][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.799][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.800][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:35.802][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:35.803][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.804][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.805][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:35.807][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:35.808][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.809][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.810][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:35.812][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:35.813][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:35.814][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:35.815][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.816][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.818][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:35.819][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:35.820][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.821][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.823][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:35.824][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:35.826][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.827][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.828][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:35.829][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:35.831][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.832][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.833][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:35.834][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:35.836][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.837][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.838][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:35.839][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:35.841][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.842][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.844][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:35.846][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:35.848][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.850][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.852][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:35.853][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:35.854][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.856][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.857][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:35.858][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:35.859][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.861][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.862][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:35.863][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:35.864][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.865][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.867][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:35.868][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:35.869][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.870][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.872][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:35.873][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:35.874][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.875][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.877][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:35.878][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:35.880][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.881][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.882][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:35.883][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:35.885][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.886][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.887][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:35.888][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:35.889][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.891][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.892][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:35.893][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:35.894][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.895][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.897][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-10-14 11:10:35.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:35.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:35.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:35.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:35.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:35.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:35.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.914][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:35.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:35.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:35.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:35.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.924][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:35.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:35.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:35.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:35.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.934][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:35.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:35.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:35.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:35.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.945][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:35.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:35.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.950][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:35.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:35.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.955][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:35.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:35.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.960][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:35.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:35.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.965][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:35.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:35.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.970][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:35.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:35.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.975][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:35.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:35.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.980][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:35.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:35.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.986][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:35.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:35.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:35.994][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:35.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:35.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:35.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.000][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:36.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:36.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.005][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:36.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:36.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.010][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:36.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:36.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.015][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:36.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:36.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.020][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:36.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:36.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:36.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:36.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.032][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:36.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:36.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.037][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:36.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:36.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.042][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:36.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:36.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.048][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:36.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:36.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.056][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:36.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:36.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:36.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:36.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:36.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:36.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:36.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:36.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:36.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:36.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:36.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:36.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:36.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:36.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.106][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:36.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:36.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.112][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:36.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:36.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.118][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:36.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:36.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.124][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:36.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:36.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.130][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:36.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:36.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:36.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:36.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.140][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:36.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:36.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.146][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:36.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:36.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.151][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:36.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:36.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.156][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:36.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:36.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.162][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:36.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:36.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.167][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:36.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:36.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.180][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [168608633, 2-(2,5-dihydroxyanilino)ethene-1,1,2-tricarbonitrile, 2-(2,5-dihydroxyanilino)ethene-1,1,2-tricarbonitrile, 2-(2,5-dihydroxyanilino)ethene-1,1,2-tricarbonitrile, 2-[[2,5-bis(oxidanyl)phenyl]amino]ethene-1,1,2-tricarbonitrile, ...].
biodb.DEBUG[2023-10-14 11:10:36.181][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:36.182][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:10:36.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:36.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:36.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:36.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:36.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:36.206][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:36.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:36.244][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:36.250][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:36.253][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2023-10-14 11:10:36.255][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:36.257][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2023-10-14 11:10:36.260][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:36.262][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:36.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:36.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:36.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:36.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:36.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:36.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:36.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:36.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:36.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:36.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:36.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:36.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:36.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.293][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:36.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:36.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:36.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:36.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.304][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:36.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:36.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.313][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:36.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:36.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:36.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:36.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.323][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:36.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:36.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.329][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:36.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:36.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:36.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:36.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.343][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:36.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:36.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.350][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:36.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:36.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.358][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:36.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:36.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.363][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:36.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:36.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.368][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:36.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:36.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.373][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:36.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:36.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.378][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:36.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:36.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.383][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:36.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:36.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.391][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:36.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:36.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.399][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:36.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:36.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:36.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:36.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:36.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:36.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:36.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:36.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.423][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:36.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:36.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.428][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:36.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:36.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.434][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:36.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:36.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.439][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:36.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:36.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.444][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:36.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:36.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.449][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:36.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:36.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.455][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:36.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:36.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.460][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:36.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:36.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.465][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:36.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:36.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.470][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:36.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:36.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.475][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:36.476][private$selectFields]
biodb.TRACE[2023-10-14 11:10:36.478][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:36.479][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:36.480][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:36.481][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:36.483][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:36.484][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.485][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.486][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:36.488][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:36.489][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.490][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.491][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:36.493][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:36.494][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.495][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.496][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:36.498][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:36.499][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.500][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.502][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:36.503][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:36.504][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.506][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.507][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:36.508][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:36.509][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.511][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.512][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:36.513][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:36.515][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.516][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.517][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:36.519][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:36.520][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.529][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.531][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:36.533][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:36.534][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.536][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.537][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:36.539][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:36.540][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.541][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.543][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:36.544][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:36.545][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.547][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.548][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:36.549][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:36.551][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.552][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.553][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:36.555][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:36.556][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.557][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.558][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:36.560][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:36.561][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.562][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.564][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:36.566][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:36.567][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.568][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.570][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:36.571][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:36.572][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.574][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.576][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:36.578][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:36.580][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.582][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.584][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:36.586][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:36.588][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.590][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.592][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:36.594][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:36.596][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.598][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.600][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:36.603][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:36.604][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.606][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.607][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:36.608][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:36.610][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.611][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.612][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:36.613][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:36.615][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.616][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.617][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:36.618][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:36.620][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.621][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.622][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:36.623][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:36.625][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.626][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.627][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:36.629][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:36.630][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.631][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.632][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:36.634][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:36.635][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.636][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.637][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:36.639][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:36.640][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.641][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.642][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:36.644][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:36.645][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.646][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.647][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:36.649][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:36.650][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.651][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.652][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:36.654][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:36.655][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.656][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.657][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:36.659][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:36.660][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.661][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.662][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:36.664][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:36.665][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.666][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.667][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:36.669][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:36.670][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.671][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.672][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:36.674][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:36.675][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.676][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.677][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:36.679][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:36.680][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:36.681][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:36.682][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.683][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.685][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:36.686][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:36.687][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.689][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.690][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:36.691][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:36.692][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.694][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.695][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:36.696][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:36.697][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.698][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.700][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:36.701][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:36.702][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.703][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.705][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:36.706][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:36.707][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.708][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.710][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:36.711][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:36.712][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.713][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.715][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:36.716][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:36.717][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.719][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.720][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:36.722][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:36.723][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.724][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.725][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:36.727][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:36.728][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.729][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.730][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:36.731][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:36.733][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.734][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.735][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:36.736][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:36.737][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.739][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.740][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:36.741][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:36.742][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.743][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.745][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:36.746][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:36.747][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.748][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.749][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:36.751][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:36.752][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.753][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.754][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:36.755][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:36.757][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.758][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.759][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-10-14 11:10:36.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:36.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:36.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:36.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:36.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:36.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:36.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.776][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:36.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:36.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.781][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:36.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:36.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:36.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:36.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.791][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:36.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:36.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.796][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:36.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:36.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.801][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:36.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:36.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.807][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:36.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:36.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:36.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:36.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.817][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:36.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:36.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:36.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:36.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.827][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:36.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:36.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.832][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:36.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:36.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.837][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:36.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:36.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.842][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:36.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:36.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:36.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:36.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.852][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:36.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:36.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.857][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:36.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:36.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.863][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:36.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:36.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.868][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:36.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:36.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.873][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:36.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:36.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.878][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:36.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:36.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.884][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:36.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:36.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.889][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:36.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:36.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.894][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:36.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:36.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.899][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:36.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:36.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.904][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:36.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:36.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.909][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:36.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:36.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:36.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:36.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:36.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:36.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:36.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:36.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:36.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:36.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:36.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:36.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:36.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:36.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.960][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:36.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:36.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.965][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:36.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:36.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.970][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:36.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:36.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.976][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:36.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:36.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.981][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:36.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:36.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.986][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:36.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:36.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.991][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:36.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:36.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:36.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:36.996][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:36.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:36.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.002][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:37.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:37.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.007][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:37.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:37.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.012][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:37.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:37.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.018][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:37.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:37.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.031][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [168534120, [(2-cyanophenyl)methyleneamino]thiourea, [(2-cyanophenyl)methylideneamino]thiourea, [(2-cyanophenyl)methylideneamino]thiourea, 1-[(2-cyanophenyl)methylideneamino]thiourea, ...].
biodb.DEBUG[2023-10-14 11:10:37.033][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:37.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:37.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:37.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:37.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:37.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:37.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:37.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:37.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:37.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:37.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:37.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:37.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:37.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.071][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:37.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:37.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.077][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:37.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:37.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:37.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:37.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:37.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:37.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:37.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:37.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:37.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:37.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.103][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:37.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:37.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.108][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:37.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:37.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:37.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:37.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.119][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:37.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:37.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.124][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:37.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:37.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:37.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:37.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.135][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:37.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:37.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.140][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:37.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:37.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.147][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:37.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:37.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.152][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:37.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:37.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.157][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:37.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:37.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.162][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:37.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:37.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.168][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:37.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:37.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:37.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:37.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:37.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:37.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.183][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:37.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:37.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.188][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:37.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:37.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.193][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:37.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:37.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.199][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:37.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:37.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.204][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:37.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:37.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.209][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:37.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:37.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.214][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:37.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:37.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.219][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:37.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:37.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.225][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:37.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:37.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.230][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:37.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:37.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.235][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:37.236][private$selectFields]
biodb.TRACE[2023-10-14 11:10:37.237][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:37.238][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:37.239][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:37.241][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:37.242][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:37.243][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.245][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.246][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:37.247][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:37.248][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.250][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.251][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:37.252][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:37.254][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.255][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.256][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:37.257][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:37.259][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.260][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.261][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:37.262][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:37.264][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.265][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.266][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:37.267][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:37.269][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.270][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.271][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:37.272][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:37.273][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.275][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.276][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:37.277][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:37.278][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.280][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.281][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:37.282][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:37.284][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.285][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.286][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:37.287][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:37.288][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.290][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.291][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:37.292][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:37.293][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.295][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.296][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:37.297][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:37.298][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.300][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.301][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:37.302][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:37.303][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.305][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.306][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:37.307][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:37.309][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.310][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.311][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:37.312][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:37.314][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.315][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.316][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:37.318][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:37.319][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.320][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.321][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:37.322][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:37.324][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.325][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.326][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:37.327][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:37.329][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.330][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.331][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:37.332][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:37.334][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.335][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.336][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:37.337][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:37.338][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.340][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.341][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:37.342][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:37.343][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.345][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.346][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:37.347][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:37.348][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.350][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.351][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:37.352][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:37.353][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.362][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.364][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:37.366][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:37.367][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.369][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.370][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:37.371][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:37.373][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.374][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.375][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:37.377][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:37.378][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.379][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.380][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:37.382][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:37.383][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.384][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.385][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:37.387][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:37.388][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.389][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.391][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:37.392][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:37.393][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.395][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.396][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:37.398][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:37.399][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.400][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.401][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:37.403][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:37.404][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.405][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.407][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:37.408][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:37.409][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.410][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.412][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:37.413][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:37.414][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.415][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.417][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:37.418][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:37.419][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.420][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.422][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:37.423][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:37.424][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:37.425][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:37.427][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.428][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.429][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:37.430][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:37.432][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.433][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.434][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:37.436][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:37.437][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.438][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.439][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:37.441][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:37.442][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.443][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.445][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:37.446][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:37.447][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.449][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.450][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:37.451][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:37.452][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.454][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.455][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:37.456][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:37.457][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.459][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.460][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:37.461][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:37.462][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.464][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.465][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:37.466][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:37.467][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.469][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.470][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:37.471][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:37.473][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.474][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.475][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:37.476][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:37.478][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.479][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.480][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:37.481][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:37.482][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.484][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.485][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:37.486][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:37.487][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.489][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.490][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:37.491][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:37.492][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.494][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.495][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:37.496][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:37.497][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.498][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.500][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:37.501][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:37.502][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.503][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.505][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-10-14 11:10:37.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:37.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:37.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:37.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:37.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:37.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:37.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:37.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:37.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:37.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:37.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:37.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:37.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.538][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:37.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:37.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:37.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:37.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:37.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:37.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.554][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:37.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:37.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:37.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:37.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.565][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:37.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:37.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.570][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:37.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:37.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:37.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:37.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.581][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:37.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:37.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.586][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:37.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:37.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.592][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:37.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:37.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:37.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:37.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.602][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:37.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:37.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.607][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:37.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:37.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.613][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:37.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:37.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:37.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:37.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.624][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:37.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:37.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.629][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:37.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:37.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:37.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:37.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.640][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:37.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:37.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:37.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:37.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.651][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:37.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:37.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.656][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:37.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:37.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.663][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:37.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:37.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:37.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:37.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:37.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:37.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:37.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:37.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:37.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:37.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:37.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:37.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:37.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:37.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.705][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:37.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:37.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.710][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:37.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:37.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.715][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:37.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:37.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.722][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:37.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:37.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.728][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:37.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:37.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.733][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:37.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:37.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.738][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:37.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:37.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.743][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:37.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:37.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.748][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:37.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:37.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.754][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:37.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:37.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.760][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:37.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:37.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.765][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:37.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:37.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.788][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [168533548, (indolin-5-ylmethyleneamino)urea, (2,3-dihydro-1H-indol-5-ylmethylideneamino)urea, (2,3-dihydro-1H-indol-5-ylmethylideneamino)urea, 1-(2,3-dihydro-1H-indol-5-ylmethylideneamino)urea, ...].
biodb.DEBUG[2023-10-14 11:10:37.790][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:37.791][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:37.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:37.800][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:37.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:37.804][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:37.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:37.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:37.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:37.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:37.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:37.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:37.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:37.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:37.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:37.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.830][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:37.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:37.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:37.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:37.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.840][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:37.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:37.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.845][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:37.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:37.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.850][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:37.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:37.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.860][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:37.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:37.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:37.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:37.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:37.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:37.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.878][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:37.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:37.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.884][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:37.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:37.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.889][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:37.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:37.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.894][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:37.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:37.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.900][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:37.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:37.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.906][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:37.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:37.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.911][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:37.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:37.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.916][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:37.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:37.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:37.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:37.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:37.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:37.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:37.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:37.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:37.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:37.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.944][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:37.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:37.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.950][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:37.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:37.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.955][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:37.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:37.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.961][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:37.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:37.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.966][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:37.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:37.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.972][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:37.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:37.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.978][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:37.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:37.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.983][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:37.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:37.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.988][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:37.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:37.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.994][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:37.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:37.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:37.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:37.999][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:38.000][private$selectFields]
biodb.TRACE[2023-10-14 11:10:38.001][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:38.003][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:38.005][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:38.007][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:38.009][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:38.011][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.012][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.014][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:38.015][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:38.017][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.018][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.019][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:38.021][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:38.022][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.023][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.025][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:38.026][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:38.027][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.029][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.030][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:38.033][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:38.035][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.036][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.037][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:38.039][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:38.040][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.041][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.043][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:38.045][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:38.046][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.048][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.049][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:38.050][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:38.051][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.053][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.055][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:38.057][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:38.058][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.060][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.062][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:38.063][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:38.064][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.065][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.067][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:38.068][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:38.069][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.070][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.072][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:38.073][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:38.074][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.075][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.076][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:38.078][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:38.079][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.080][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.081][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:38.083][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:38.084][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.085][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.086][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:38.088][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:38.089][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.090][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.091][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:38.092][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:38.094][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.095][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.096][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:38.098][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:38.099][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.100][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.101][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:38.102][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:38.104][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.105][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.106][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:38.107][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:38.108][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.110][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.111][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:38.112][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:38.114][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.115][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.116][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:38.118][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:38.119][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.120][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.121][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:38.123][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:38.125][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.127][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.129][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:38.131][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:38.133][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.135][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.136][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:38.137][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:38.139][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.140][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.141][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:38.143][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:38.144][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.146][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.148][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:38.150][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:38.151][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.152][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.153][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:38.155][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:38.156][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.158][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.160][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:38.161][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:38.162][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.164][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.166][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:38.168][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:38.169][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.170][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.172][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:38.174][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:38.175][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.177][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.178][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:38.180][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:38.181][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.182][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.184][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:38.185][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:38.186][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.188][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.189][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:38.190][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:38.191][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.197][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.198][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:38.200][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:38.201][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.202][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.204][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:38.205][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:38.207][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:38.208][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:38.210][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.211][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.213][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:38.214][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:38.215][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.217][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.218][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:38.219][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:38.221][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.222][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.231][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:38.233][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:38.234][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.236][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.237][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:38.239][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:38.240][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.241][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.243][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:38.244][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:38.245][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.246][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.248][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:38.249][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:38.250][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.252][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.253][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:38.254][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:38.256][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.257][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.258][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:38.260][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:38.261][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.262][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.263][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:38.265][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:38.266][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.267][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.269][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:38.270][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:38.271][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.272][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.274][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:38.275][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:38.276][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.278][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.279][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:38.281][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:38.282][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.284][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.287][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:38.289][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:38.291][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.292][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.294][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:38.296][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:38.298][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.300][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.302][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:38.304][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:38.306][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.308][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.311][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-10-14 11:10:38.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:38.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:38.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:38.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:38.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:38.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:38.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.339][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:38.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:38.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.347][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:38.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:38.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:38.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:38.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.364][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:38.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:38.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.372][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:38.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:38.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.381][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:38.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:38.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:38.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:38.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:38.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:38.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.405][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:38.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:38.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:38.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:38.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:38.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:38.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:38.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:38.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.432][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:38.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:38.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:38.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:38.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:38.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:38.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.458][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:38.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:38.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.464][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:38.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:38.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.470][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:38.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:38.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.476][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:38.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:38.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.481][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:38.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:38.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:38.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:38.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.495][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:38.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:38.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.500][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:38.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:38.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:38.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:38.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.515][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:38.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:38.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.521][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:38.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:38.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.529][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:38.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:38.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:38.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:38.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:38.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:38.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:38.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:38.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:38.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:38.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:38.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:38.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:38.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:38.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.572][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:38.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:38.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.577][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:38.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:38.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.582][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:38.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:38.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.588][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:38.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:38.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.593][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:38.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:38.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.598][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:38.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:38.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.603][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:38.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:38.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.609][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:38.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:38.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.614][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:38.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:38.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.619][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:38.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:38.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.628][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:38.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:38.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.633][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:38.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:38.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.646][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [168531246, 4-(thiadiazol-4-yl)benzaldehyde hydrazone, 4-(4-thiadiazolyl)benzaldehyde hydrazone, [4-(thiadiazol-4-yl)phenyl]methylidenehydrazine, [4-(1,2,3-thiadiazol-4-yl)phenyl]methylidenediazane, ...].
biodb.DEBUG[2023-10-14 11:10:38.648][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:38.649][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:10:38.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:38.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:38.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:38.662][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:38.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:38.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:38.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:38.704][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:38.716][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:38.718][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2023-10-14 11:10:38.720][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:38.723][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2023-10-14 11:10:38.727][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:38.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:38.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:38.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:38.744][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:38.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:38.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:38.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:38.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:38.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:38.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:38.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:38.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.759][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:38.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:38.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:38.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:38.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.770][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:38.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:38.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.775][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:38.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:38.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.780][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:38.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:38.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.785][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:38.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:38.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.790][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:38.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:38.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.795][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:38.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:38.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.800][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:38.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:38.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.805][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:38.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:38.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.810][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:38.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:38.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.815][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:38.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:38.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.820][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:38.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:38.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:38.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:38.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.831][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:38.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:38.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.836][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:38.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:38.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.841][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:38.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:38.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.847][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:38.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:38.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:38.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:38.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:38.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:38.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:38.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:38.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:38.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:38.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.874][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:38.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:38.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.881][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:38.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:38.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.887][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:38.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:38.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.896][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:38.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:38.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.902][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:38.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:38.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.907][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:38.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:38.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.912][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:38.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:38.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.917][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:38.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:38.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.922][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:38.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:38.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.928][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:38.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:38.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.934][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:38.936][private$selectFields]
biodb.TRACE[2023-10-14 11:10:38.937][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:38.939][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:38.940][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:38.942][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:38.944][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:38.946][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.947][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.949][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:38.950][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:38.952][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.953][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.956][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:38.958][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:38.960][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.962][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.965][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:38.967][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:38.969][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.970][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.972][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:38.973][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:38.975][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.977][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.978][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:38.980][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:38.981][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.983][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.984][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:38.986][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:38.988][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.989][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.991][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:38.993][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:38.994][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:38.996][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:38.997][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:38.999][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:39.000][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.002][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.004][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:39.005][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:39.007][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.008][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.010][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:39.011][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:39.012][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.013][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.014][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:39.016][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:39.017][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.019][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.020][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:39.022][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:39.023][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.024][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.025][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:39.027][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:39.028][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.029][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.030][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:39.032][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:39.033][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.034][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.035][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:39.037][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:39.038][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.039][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.041][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:39.042][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:39.043][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.044][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.045][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:39.047][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:39.048][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.049][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.050][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:39.052][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:39.053][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.054][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.055][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:39.056][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:39.057][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.059][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.060][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:39.061][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:39.062][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.064][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.065][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:39.066][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:39.067][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.068][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.070][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:39.071][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:39.072][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.073][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.075][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:39.076][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:39.077][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.078][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.079][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:39.081][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:39.082][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.083][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.084][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:39.085][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:39.087][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.088][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.089][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:39.090][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:39.091][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.093][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.094][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:39.095][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:39.096][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.097][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.098][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:39.100][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:39.101][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.102][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.103][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:39.105][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:39.106][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.107][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.108][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:39.109][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:39.111][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.112][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.113][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:39.114][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:39.116][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.117][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.118][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:39.119][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:39.121][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.122][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.123][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:39.124][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:39.125][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.127][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.128][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:39.129][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:39.130][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:39.132][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:39.133][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.134][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.135][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:39.136][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:39.137][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.139][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.140][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:39.141][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:39.142][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.151][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.152][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:39.154][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:39.155][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.156][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.157][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:39.159][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:39.160][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.161][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.162][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:39.164][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:39.165][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.166][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.167][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:39.168][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:39.170][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.171][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.172][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:39.173][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:39.175][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.176][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.177][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:39.178][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:39.179][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.180][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.182][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:39.183][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:39.184][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.185][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.186][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:39.188][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:39.189][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.190][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.191][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:39.193][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:39.194][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.195][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.196][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:39.197][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:39.199][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.200][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.201][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:39.202][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:39.203][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.204][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.206][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:39.207][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:39.208][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.209][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.210][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:39.212][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:39.213][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.214][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.215][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-10-14 11:10:39.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:39.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:39.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:39.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:39.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:39.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:39.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.231][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:39.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:39.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.236][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:39.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:39.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:39.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:39.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.246][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:39.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:39.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.251][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:39.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:39.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.256][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:39.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:39.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.261][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:39.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:39.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.266][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:39.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:39.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.271][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:39.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:39.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.276][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:39.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:39.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.281][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:39.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:39.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:39.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:39.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.290][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:39.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:39.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.295][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:39.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:39.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.300][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:39.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:39.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.305][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:39.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:39.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.310][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:39.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:39.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.315][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:39.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:39.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:39.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:39.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.325][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:39.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:39.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:39.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:39.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.334][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:39.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:39.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.339][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:39.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:39.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:39.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:39.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.349][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:39.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:39.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.354][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:39.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:39.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.358][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:39.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:39.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:39.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:39.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:39.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:39.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:39.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:39.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:39.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:39.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:39.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:39.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.389][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:39.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:39.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.394][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:39.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:39.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.399][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:39.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:39.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.404][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:39.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:39.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.409][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:39.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:39.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.414][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:39.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:39.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.420][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:39.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:39.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.424][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:39.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:39.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.429][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:39.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:39.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.434][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:39.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:39.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.439][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:39.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:39.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.444][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:39.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:39.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.449][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:39.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:39.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.462][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [168651635, N-(4,5-dimethoxy-2-nitro-phenyl)formamide, N-(4,5-dimethoxy-2-nitrophenyl)formamide, N-(4,5-dimethoxy-2-nitrophenyl)formamide, N-(4,5-dimethoxy-2-nitro-phenyl)methanamide, ...].
biodb.DEBUG[2023-10-14 11:10:39.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:39.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:39.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:39.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:39.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:39.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:39.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:39.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:39.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:39.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:39.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:39.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.488][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:39.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:39.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.493][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:39.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:39.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.497][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:39.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:39.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.502][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:39.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:39.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.507][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:39.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:39.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.512][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:39.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:39.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:39.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:39.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:39.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:39.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.535][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:39.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:39.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.540][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:39.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:39.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.545][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:39.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:39.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.550][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:39.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:39.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.555][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:39.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:39.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:39.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:39.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.565][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:39.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:39.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.570][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:39.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:39.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.575][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:39.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:39.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.580][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:39.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:39.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:39.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:39.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:39.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:39.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:39.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:39.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.600][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:39.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:39.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.605][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:39.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:39.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.610][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:39.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:39.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.615][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:39.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:39.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.620][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:39.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:39.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.625][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:39.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:39.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.630][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:39.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:39.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.635][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:39.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:39.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.640][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:39.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:39.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.645][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:39.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:39.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.649][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:39.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:39.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.654][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:39.655][private$selectFields]
biodb.TRACE[2023-10-14 11:10:39.657][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:39.658][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:39.659][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:39.661][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:39.662][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:39.663][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.664][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.666][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:39.667][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:39.668][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.670][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.671][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:39.672][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:39.673][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.675][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.676][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:39.677][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:39.678][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.679][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.680][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:39.682][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:39.683][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.684][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.685][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:39.686][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:39.688][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.689][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.690][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:39.691][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:39.692][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.693][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.695][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:39.696][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:39.697][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.698][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.699][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:39.701][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:39.702][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.703][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.704][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:39.706][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:39.707][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.708][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.709][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:39.711][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:39.712][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.713][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.714][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:39.716][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:39.717][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.718][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.719][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:39.720][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:39.722][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.723][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.724][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:39.726][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:39.727][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.728][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.729][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:39.731][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:39.732][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.733][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.734][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:39.735][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:39.737][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.738][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.739][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:39.740][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:39.741][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.742][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.744][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:39.745][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:39.746][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.747][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.748][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:39.750][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:39.751][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.752][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.753][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:39.754][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:39.755][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.757][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.758][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:39.759][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:39.760][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.761][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.762][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:39.764][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:39.765][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.766][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.767][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:39.768][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:39.770][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.771][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.772][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:39.773][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:39.774][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.775][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.777][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:39.778][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:39.779][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.780][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.781][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:39.783][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:39.784][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.785][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.786][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:39.787][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:39.788][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.789][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.791][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:39.792][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:39.793][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.794][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.795][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:39.797][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:39.798][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.799][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.800][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:39.801][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:39.802][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.803][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.805][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:39.806][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:39.807][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.808][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.809][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:39.811][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:39.812][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.813][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.814][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:39.815][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:39.816][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.818][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.819][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:39.820][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:39.821][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.822][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.824][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:39.825][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:39.826][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:39.827][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:39.828][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.830][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.831][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:39.832][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:39.833][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.834][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.835][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:39.837][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:39.838][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.839][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.840][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:39.841][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:39.842][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.844][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.845][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:39.846][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:39.847][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.848][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.849][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:39.851][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:39.852][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.853][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.854][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:39.855][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:39.857][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.858][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.859][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:39.860][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:39.861][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.862][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.864][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:39.865][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:39.866][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.867][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.868][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:39.870][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:39.871][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.872][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.873][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:39.875][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:39.876][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.877][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.879][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:39.880][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:39.881][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.882][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.884][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:39.885][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:39.886][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.887][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.889][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:39.890][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:39.891][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.893][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.895][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:39.896][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:39.897][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.898][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.900][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:39.901][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:39.902][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.903][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.905][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-10-14 11:10:39.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:39.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:39.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:39.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:39.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:39.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:39.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.930][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:39.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:39.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.940][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:39.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:39.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.946][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:39.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:39.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.951][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:39.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:39.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.957][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:39.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:39.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.963][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:39.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:39.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.969][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:39.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:39.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.975][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:39.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:39.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.981][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:39.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:39.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:39.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:39.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.992][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:39.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:39.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:39.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:39.997][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:39.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:40.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.003][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:40.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:40.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:40.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:40.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:40.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:40.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.019][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:40.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:40.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.024][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:40.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:40.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.030][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:40.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:40.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.035][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:40.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:40.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.041][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:40.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:40.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.046][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:40.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:40.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.051][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:40.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:40.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.057][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:40.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:40.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:40.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:40.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.071][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:40.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:40.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.076][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:40.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:40.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.082][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:40.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:40.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:40.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:40.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:40.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:40.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:40.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:40.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:40.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:40.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:40.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:40.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:40.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:40.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.127][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:40.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:40.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.135][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:40.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:40.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.144][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:40.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:40.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.150][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:40.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:40.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.156][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:40.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:40.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.163][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:40.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:40.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.170][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:40.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:40.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.175][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:40.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:40.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.182][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:40.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:40.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.189][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:40.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:40.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.194][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:40.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:40.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.199][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:40.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:40.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.213][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [168609923, 2-(3,5-dihydroxyanilino)ethene-1,1,2-tricarbonitrile, 2-(3,5-dihydroxyanilino)ethene-1,1,2-tricarbonitrile, 2-(3,5-dihydroxyanilino)ethene-1,1,2-tricarbonitrile, 2-[[3,5-bis(oxidanyl)phenyl]amino]ethene-1,1,2-tricarbonitrile, ...].
biodb.DEBUG[2023-10-14 11:10:40.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:40.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:40.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:40.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:40.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:40.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:40.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:40.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:40.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:40.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:40.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:40.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:40.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:40.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.247][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:40.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:40.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.252][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:40.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:40.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.258][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:40.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:40.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.263][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:40.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:40.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.268][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:40.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:40.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.273][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:40.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:40.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:40.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:40.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:40.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:40.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.290][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:40.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:40.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.296][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:40.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:40.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.303][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:40.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:40.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.308][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:40.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:40.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.314][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:40.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:40.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.319][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:40.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:40.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:40.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:40.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.329][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:40.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:40.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.334][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:40.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:40.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:40.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:40.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:40.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:40.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:40.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:40.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:40.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:40.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.367][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:40.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:40.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.373][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:40.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:40.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.379][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:40.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:40.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.384][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:40.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:40.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.390][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:40.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:40.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.395][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:40.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:40.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.401][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:40.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:40.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.406][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:40.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:40.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.411][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:40.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:40.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.416][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:40.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:40.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.421][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:40.422][private$selectFields]
biodb.TRACE[2023-10-14 11:10:40.423][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:40.425][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:40.426][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:40.427][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:40.429][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:40.430][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.431][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.435][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:40.438][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:40.439][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.440][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.442][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:40.443][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:40.444][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.446][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.447][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:40.449][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:40.451][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.452][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.454][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:40.455][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:40.456][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.458][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.459][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:40.460][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:40.462][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.463][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.464][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:40.465][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:40.467][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.468][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.469][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:40.470][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:40.472][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.473][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.474][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:40.476][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:40.477][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.478][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.479][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:40.481][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:40.482][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.483][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.484][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:40.486][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:40.487][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.488][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.490][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:40.491][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:40.492][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.493][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.495][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:40.496][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:40.497][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.498][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.500][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:40.501][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:40.502][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.503][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.505][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:40.506][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:40.507][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.509][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.510][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:40.511][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:40.513][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.514][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.515][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:40.517][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:40.518][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.519][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.520][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:40.522][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:40.523][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.524][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.525][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:40.527][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:40.528][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.530][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.531][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:40.532][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:40.533][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.535][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.536][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:40.537][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:40.539][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.540][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.541][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:40.542][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:40.544][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.545][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.546][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:40.547][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:40.549][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.550][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.551][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:40.552][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:40.554][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.555][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.556][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:40.558][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:40.559][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.560][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.561][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:40.563][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:40.564][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.565][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.566][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:40.568][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:40.569][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.570][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.571][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:40.573][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:40.574][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.575][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.577][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:40.578][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:40.579][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.581][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.582][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:40.583][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:40.584][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.586][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.587][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:40.588][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:40.589][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.591][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.592][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:40.593][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:40.595][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.596][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.597][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:40.599][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:40.600][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.601][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.603][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:40.604][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:40.605][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.606][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.608][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:40.609][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:40.610][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:40.612][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:40.613][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.615][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.617][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:40.619][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:40.621][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.624][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.625][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:40.627][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:40.628][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.630][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.633][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:40.635][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:40.637][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.638][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.640][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:40.641][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:40.642][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.644][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.645][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:40.647][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:40.648][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.649][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.651][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:40.652][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:40.653][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.654][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.656][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:40.657][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:40.658][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.660][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.661][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:40.662][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:40.664][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.665][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.666][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:40.667][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:40.669][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.670][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.671][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:40.673][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:40.674][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.675][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.676][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:40.678][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:40.679][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.680][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.681][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:40.683][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:40.684][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.685][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.687][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:40.689][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:40.691][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.692][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.693][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:40.696][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:40.697][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.698][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.700][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:40.701][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:40.703][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.704][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.706][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-10-14 11:10:40.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:40.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:40.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:40.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:40.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:40.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:40.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:40.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:40.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:40.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:40.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.734][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:40.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:40.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:40.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:40.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.744][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:40.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:40.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.749][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:40.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:40.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:40.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:40.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:40.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:40.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.765][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:40.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:40.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.771][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:40.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:40.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.776][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:40.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:40.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:40.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:40.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:40.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:40.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.803][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:40.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:40.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.811][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:40.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:40.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.818][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:40.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:40.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.824][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:40.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:40.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.829][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:40.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:40.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:40.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:40.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.844][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:40.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:40.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:40.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:40.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.858][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:40.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:40.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.866][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:40.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:40.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:40.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:40.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.877][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:40.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:40.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.884][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:40.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:40.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.889][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:40.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:40.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:40.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:40.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:40.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:40.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:40.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:40.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:40.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:40.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:40.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:40.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:40.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:40.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.937][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:40.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:40.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.942][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:40.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:40.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.947][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:40.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:40.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.953][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:40.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:40.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.959][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:40.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:40.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.964][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:40.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:40.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.970][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:40.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:40.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.977][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:40.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:40.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.982][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:40.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:40.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.988][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:40.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:40.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:40.993][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:40.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:40.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:40.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.000][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:41.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:41.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.015][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [168608633, 2-(2,5-dihydroxyanilino)ethene-1,1,2-tricarbonitrile, 2-(2,5-dihydroxyanilino)ethene-1,1,2-tricarbonitrile, 2-(2,5-dihydroxyanilino)ethene-1,1,2-tricarbonitrile, 2-[[2,5-bis(oxidanyl)phenyl]amino]ethene-1,1,2-tricarbonitrile, ...].
biodb.DEBUG[2023-10-14 11:10:41.017][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:41.018][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-10-14 11:10:41.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:41.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:41.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:41.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:41.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.036][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:41.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:41.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:41.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:41.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:41.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:41.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:41.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:41.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:41.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:41.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:41.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:41.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:41.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:41.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:41.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:41.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:41.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:41.082][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:41.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:41.127][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:41.132][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:41.135][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2023-10-14 11:10:41.137][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:41.140][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2023-10-14 11:10:41.144][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:41.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:41.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:41.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:41.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:41.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:41.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:41.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:41.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:41.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:41.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:41.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:41.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.178][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:41.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:41.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:41.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:41.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.187][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:41.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:41.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:41.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:41.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.198][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:41.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:41.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.203][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:41.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:41.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:41.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:41.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.213][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:41.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:41.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.218][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:41.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:41.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.223][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:41.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:41.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.228][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:41.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:41.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.233][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:41.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:41.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.247][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:41.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:41.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.253][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:41.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:41.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:41.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:41.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:41.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:41.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.275][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:41.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:41.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.281][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:41.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:41.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:41.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:41.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:41.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:41.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:41.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:41.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:41.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:41.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.311][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:41.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:41.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.319][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:41.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:41.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.325][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:41.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:41.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.330][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:41.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:41.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.335][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:41.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:41.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.340][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:41.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:41.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.346][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:41.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:41.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.352][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:41.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:41.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.357][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:41.358][private$selectFields]
biodb.TRACE[2023-10-14 11:10:41.359][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:41.360][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:41.362][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:41.363][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:41.364][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:41.365][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.367][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.368][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:41.370][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:41.371][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.373][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.374][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:41.375][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:41.376][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.378][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.380][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:41.381][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:41.382][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.384][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.385][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:41.387][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:41.388][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.389][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.390][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:41.392][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:41.394][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.396][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.398][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:41.401][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:41.403][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.405][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.406][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:41.408][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:41.409][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.411][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.412][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:41.414][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:41.415][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.416][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.418][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:41.420][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:41.422][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.425][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.426][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:41.428][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:41.430][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.431][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.432][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:41.433][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:41.435][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.436][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.437][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:41.439][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:41.440][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.442][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.443][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:41.444][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:41.446][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.447][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.449][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:41.450][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:41.451][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.452][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.454][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:41.455][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:41.456][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.458][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.459][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:41.460][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:41.462][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.463][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.464][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:41.465][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:41.467][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.468][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.469][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:41.470][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:41.472][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.473][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.474][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:41.476][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:41.477][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.478][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.479][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:41.481][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:41.482][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.483][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.485][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:41.486][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:41.488][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.489][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.491][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:41.493][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:41.495][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.498][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.499][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:41.500][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:41.502][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.503][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.504][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:41.505][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:41.506][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.508][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.509][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:41.510][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:41.511][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.513][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.514][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:41.515][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:41.516][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.518][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.520][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:41.521][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:41.522][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.523][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.525][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:41.526][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:41.527][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.528][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.529][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:41.531][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:41.532][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.533][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.534][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:41.536][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:41.537][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.538][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.539][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:41.541][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:41.542][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.543][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.544][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:41.546][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:41.547][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:41.548][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:41.549][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.550][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.552][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:41.553][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:41.554][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.556][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.557][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:41.558][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:41.560][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.561][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.562][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:41.563][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:41.564][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.566][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.567][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:41.569][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:41.570][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.571][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.573][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:41.574][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:41.576][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.577][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.579][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:41.581][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:41.583][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.585][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.586][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:41.587][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:41.588][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.590][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.591][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:41.592][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:41.593][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.595][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.597][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:41.600][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:41.602][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.603][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.604][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:41.606][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:41.607][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.609][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.610][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:41.611][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:41.612][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.614][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.615][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:41.616][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:41.617][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.619][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.620][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:41.621][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:41.622][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.624][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.625][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:41.626][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:41.627][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.629][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.630][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:41.631][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:41.632][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.633][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.635][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-10-14 11:10:41.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:41.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:41.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:41.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:41.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:41.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:41.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.651][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:41.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:41.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.656][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:41.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:41.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:41.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:41.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.666][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:41.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:41.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.671][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:41.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:41.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.676][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:41.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:41.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.689][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:41.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:41.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.694][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:41.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:41.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:41.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:41.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.704][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:41.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:41.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.709][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:41.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:41.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:41.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:41.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:41.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:41.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.725][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:41.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:41.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.731][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:41.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:41.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.736][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:41.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:41.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.741][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:41.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:41.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.746][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:41.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:41.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:41.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:41.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.757][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:41.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:41.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.762][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:41.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:41.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.770][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:41.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:41.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.775][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:41.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:41.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:41.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:41.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.787][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:41.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:41.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.793][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:41.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:41.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.798][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:41.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:41.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:41.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:41.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:41.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:41.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:41.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:41.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:41.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:41.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:41.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:41.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:41.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:41.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.856][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:41.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:41.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.861][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:41.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:41.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.867][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:41.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:41.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.873][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:41.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:41.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.879][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:41.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:41.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.885][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:41.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:41.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.890][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:41.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:41.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.895][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:41.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:41.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.900][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:41.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:41.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.905][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:41.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:41.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.911][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:41.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:41.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.916][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:41.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:41.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.937][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [168654156, N-(2-methyl-3-pyrrolidin-1-yl-phenyl)formamide, N-[2-methyl-3-(1-pyrrolidinyl)phenyl]formamide, N-(2-methyl-3-pyrrolidin-1-ylphenyl)formamide, N-(2-methyl-3-pyrrolidin-1-yl-phenyl)methanamide, ...].
biodb.DEBUG[2023-10-14 11:10:41.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:41.942][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:41.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:41.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:41.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:41.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:41.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:41.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:41.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:41.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:41.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:41.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.976][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:41.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:41.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.985][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:41.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:41.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:41.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:41.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:41.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:41.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:42.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:42.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:42.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:42.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:42.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:42.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.019][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:42.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:42.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:42.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:42.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.033][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:42.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:42.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.042][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:42.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:42.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.050][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:42.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:42.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.055][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:42.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:42.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:42.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:42.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.065][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:42.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:42.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:42.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:42.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:42.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:42.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.080][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:42.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:42.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.089][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:42.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:42.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:42.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:42.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:42.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:42.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:42.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:42.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.124][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:42.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:42.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.131][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:42.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:42.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.138][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:42.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:42.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.145][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:42.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:42.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.151][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:42.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:42.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.158][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:42.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:42.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.164][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:42.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:42.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.170][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:42.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:42.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.175][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:42.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:42.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.188][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:42.190][private$selectFields]
biodb.TRACE[2023-10-14 11:10:42.191][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:42.192][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:42.194][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:42.195][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:42.196][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:42.197][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.199][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.200][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:42.201][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:42.202][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.204][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.205][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:42.206][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:42.208][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.209][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.210][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:42.212][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:42.213][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.214][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.215][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:42.217][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:42.218][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.219][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.220][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:42.222][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:42.223][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.224][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.225][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:42.227][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:42.228][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.229][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.230][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:42.232][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:42.233][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.234][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.236][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:42.237][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:42.238][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.239][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.241][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:42.242][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:42.243][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.244][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.246][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:42.247][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:42.248][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.249][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.250][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:42.252][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:42.253][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.254][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.256][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:42.257][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:42.258][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.259][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.261][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:42.262][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:42.263][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.264][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.266][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:42.267][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:42.268][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.270][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.271][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:42.272][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:42.273][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.275][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.276][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:42.277][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:42.278][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.280][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.281][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:42.282][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:42.283][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.285][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.286][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:42.287][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:42.289][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.290][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.291][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:42.293][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:42.294][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.295][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.296][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:42.298][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:42.299][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.300][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.301][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:42.303][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:42.304][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.305][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.307][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:42.308][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:42.309][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.310][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.312][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:42.313][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:42.314][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.315][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.316][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:42.318][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:42.319][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.320][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.322][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:42.323][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:42.324][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.325][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.327][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:42.328][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:42.329][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.330][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.332][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:42.333][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:42.334][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.335][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.337][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:42.338][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:42.339][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.340][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.341][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:42.343][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:42.344][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.345][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.346][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:42.348][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:42.349][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.350][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.351][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:42.353][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:42.354][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.355][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.356][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:42.358][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:42.359][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:42.360][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:42.362][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.363][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.365][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:42.368][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:42.370][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.372][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.374][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:42.377][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:42.379][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.381][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.383][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:42.385][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:42.386][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.388][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.389][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:42.390][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:42.392][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.393][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.394][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:42.395][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:42.397][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.398][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.401][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:42.403][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:42.405][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.406][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.407][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:42.409][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:42.410][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.411][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.412][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:42.414][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:42.415][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.416][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.417][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:42.419][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:42.420][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.421][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.423][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:42.424][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:42.425][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.426][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.428][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:42.429][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:42.430][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.431][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.433][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:42.434][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:42.435][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.436][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.438][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:42.439][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:42.440][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.442][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.444][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:42.446][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:42.448][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.451][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.453][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:42.455][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:42.458][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.459][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.461][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-10-14 11:10:42.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:42.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:42.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:42.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:42.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:42.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:42.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.478][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:42.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:42.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:42.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:42.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.488][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:42.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:42.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.494][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:42.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:42.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.499][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:42.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:42.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.504][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:42.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:42.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.509][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:42.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:42.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.515][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:42.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:42.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:42.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:42.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:42.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:42.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:42.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:42.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.538][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:42.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:42.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:42.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:42.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.549][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:42.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:42.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.555][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:42.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:42.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.560][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:42.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:42.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.565][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:42.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:42.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.570][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:42.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:42.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:42.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:42.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.580][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:42.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:42.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:42.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:42.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:42.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:42.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:42.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:42.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:42.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:42.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.616][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:42.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:42.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.625][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:42.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:42.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.634][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:42.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:42.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:42.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:42.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:42.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:42.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:42.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:42.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:42.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:42.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:42.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:42.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:42.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:42.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.674][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:42.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:42.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.679][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:42.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:42.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.684][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:42.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:42.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.691][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:42.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:42.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.696][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:42.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:42.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.702][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:42.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:42.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.707][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:42.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:42.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.713][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:42.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:42.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.718][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:42.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:42.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.723][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:42.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:42.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.728][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:42.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:42.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.736][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:42.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:42.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.753][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [168653588, N-[2-(cyclopentylamino)phenyl]formamide, N-[2-(cyclopentylamino)phenyl]formamide, N-[2-(cyclopentylamino)phenyl]formamide, N-[2-(cyclopentylamino)phenyl]methanamide, ...].
biodb.DEBUG[2023-10-14 11:10:42.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:42.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:42.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:42.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:42.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:42.768][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:42.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:42.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:42.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:42.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:42.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:42.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:42.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:42.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.788][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:42.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:42.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:42.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:42.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:42.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:42.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.804][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:42.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:42.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:42.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:42.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:42.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:42.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:42.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:42.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:42.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:42.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.830][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:42.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:42.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.835][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:42.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:42.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.841][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:42.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:42.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.846][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:42.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:42.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.852][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:42.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:42.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.858][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:42.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:42.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.863][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:42.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:42.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.868][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:42.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:42.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.874][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:42.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:42.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:42.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:42.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:42.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:42.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.889][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:42.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:42.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:42.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:42.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.908][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:42.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:42.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.913][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:42.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:42.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.919][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:42.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:42.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:42.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:42.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.929][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:42.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:42.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.938][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:42.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:42.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.947][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:42.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:42.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.953][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:42.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:42.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.963][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:42.965][private$selectFields]
biodb.TRACE[2023-10-14 11:10:42.967][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:42.968][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:42.970][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:42.971][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:42.972][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:42.974][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.975][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.976][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:42.977][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:42.979][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.980][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.981][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:42.982][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:42.983][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.985][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.986][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:42.987][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:42.988][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.990][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.991][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:42.992][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:42.993][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:42.995][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:42.996][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:42.998][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:42.999][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.000][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.001][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:43.003][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:43.004][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.005][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.006][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:43.008][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:43.010][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.011][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.012][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:43.014][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:43.015][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.016][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.017][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:43.019][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:43.020][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.021][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.022][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:43.024][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:43.025][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.026][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.027][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:43.029][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:43.030][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.031][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.032][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:43.034][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:43.035][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.036][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.038][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:43.039][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:43.040][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.041][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.043][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:43.044][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:43.045][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.046][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.047][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:43.049][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:43.058][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.060][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.062][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:43.063][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:43.064][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.066][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.067][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:43.068][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:43.070][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.071][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.072][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:43.074][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:43.075][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.076][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.078][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:43.080][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:43.082][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.083][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.085][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:43.087][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:43.089][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.090][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.091][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:43.093][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:43.094][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.095][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.096][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:43.098][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:43.099][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.100][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.101][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:43.103][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:43.105][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.106][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.107][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:43.109][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:43.110][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.111][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.113][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:43.115][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:43.116][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.118][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.119][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:43.121][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:43.123][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.124][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.126][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:43.128][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:43.129][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.131][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.132][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:43.134][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:43.136][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.137][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.139][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:43.141][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:43.142][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.143][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.144][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:43.146][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:43.147][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.148][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.150][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:43.152][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:43.153][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.154][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.156][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:43.157][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:43.158][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:43.160][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:43.161][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.162][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.163][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:43.166][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:43.168][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.170][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.172][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:43.173][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:43.174][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.175][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.177][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:43.178][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:43.179][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.181][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.182][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:43.184][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:43.185][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.186][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.187][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:43.189][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:43.190][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.191][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.193][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:43.194][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:43.195][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.196][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.198][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:43.200][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:43.202][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.204][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.206][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:43.208][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:43.209][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.211][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.213][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:43.214][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:43.216][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.217][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.219][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:43.220][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:43.222][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.223][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.224][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:43.225][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:43.226][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.228][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.229][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:43.230][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:43.231][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.233][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.234][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:43.235][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:43.237][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.239][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.241][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:43.243][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:43.245][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.247][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.249][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:43.251][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:43.252][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.254][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.255][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-10-14 11:10:43.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:43.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:43.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:43.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:43.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:43.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:43.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.275][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:43.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:43.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.281][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:43.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:43.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:43.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:43.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.291][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:43.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:43.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.297][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:43.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:43.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.302][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:43.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:43.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:43.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:43.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.313][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:43.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:43.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.319][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:43.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:43.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:43.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:43.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:43.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:43.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.335][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:43.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:43.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.341][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:43.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:43.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.346][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:43.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:43.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.354][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:43.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:43.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.364][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:43.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:43.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.372][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:43.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:43.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.377][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:43.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:43.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.382][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:43.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:43.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.387][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:43.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:43.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.392][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:43.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:43.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:43.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:43.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:43.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:43.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:43.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:43.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.412][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:43.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:43.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.417][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:43.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:43.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.423][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:43.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:43.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:43.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:43.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:43.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:43.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:43.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:43.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:43.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:43.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:43.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:43.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:43.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:43.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.469][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:43.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:43.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.474][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:43.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:43.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.479][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:43.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:43.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.485][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:43.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:43.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.491][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:43.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:43.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.496][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:43.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:43.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.503][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:43.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:43.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.512][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:43.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:43.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.530][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:43.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:43.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.537][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:43.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:43.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.543][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:43.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:43.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.549][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:43.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:43.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.564][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [168651976, N-(1,3,3-trimethylindolin-5-yl)formamide, N-(1,3,3-trimethyl-2H-indol-5-yl)formamide, N-(1,3,3-trimethyl-2H-indol-5-yl)formamide, N-(1,3,3-trimethyl-2H-indol-5-yl)methanamide, ...].
biodb.DEBUG[2023-10-14 11:10:43.566][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:43.567][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:10:43.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:43.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:43.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:43.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:43.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:43.586][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:43.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:43.636][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:43.641][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:43.643][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2023-10-14 11:10:43.645][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:43.647][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2023-10-14 11:10:43.650][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:43.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:43.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:43.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:43.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:43.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:43.666][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:43.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:43.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:43.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:43.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:43.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:43.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.679][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:43.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:43.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.685][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:43.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:43.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:43.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:43.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.695][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:43.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:43.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:43.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:43.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:43.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:43.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:43.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:43.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.716][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:43.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:43.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:43.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:43.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.727][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:43.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:43.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.732][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:43.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:43.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.737][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:43.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:43.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.742][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:43.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:43.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.747][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:43.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:43.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.753][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:43.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:43.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.761][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:43.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:43.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.766][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:43.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:43.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.770][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:43.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:43.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.775][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:43.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:43.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.780][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:43.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:43.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:43.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:43.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:43.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:43.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.795][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:43.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:43.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.800][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:43.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:43.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.805][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:43.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:43.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:43.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:43.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.815][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:43.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:43.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.820][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:43.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:43.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.825][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:43.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:43.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.830][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:43.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:43.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.835][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:43.836][private$selectFields]
biodb.TRACE[2023-10-14 11:10:43.837][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:43.838][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:43.839][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:43.841][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:43.842][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:43.843][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.844][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.846][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:43.847][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:43.848][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.849][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.850][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:43.852][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:43.853][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.854][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.855][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:43.857][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:43.858][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.859][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.860][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:43.862][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:43.863][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.864][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.865][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:43.867][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:43.869][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.871][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.874][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:43.876][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:43.877][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.878][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.880][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:43.881][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:43.882][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.883][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.885][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:43.886][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:43.887][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.889][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.890][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:43.891][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:43.893][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.894][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.895][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:43.896][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:43.898][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.899][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.900][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:43.902][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:43.903][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.904][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.905][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:43.907][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:43.908][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.909][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.910][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:43.912][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:43.913][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.914][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.915][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:43.917][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:43.918][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.919][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.920][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:43.922][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:43.923][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.924][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.925][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:43.927][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:43.928][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.929][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.930][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:43.931][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:43.933][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.934][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.942][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:43.944][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:43.946][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.947][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.949][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:43.950][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:43.951][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.953][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.954][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:43.955][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:43.957][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.958][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.959][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:43.961][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:43.962][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.963][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.964][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:43.966][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:43.967][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.968][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.969][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:43.971][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:43.972][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.974][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.976][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:43.978][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:43.980][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.982][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.984][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:43.986][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:43.987][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.989][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.990][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:43.992][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:43.994][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:43.995][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:43.996][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:43.997][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:43.999][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.000][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.001][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:44.003][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:44.004][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.005][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.006][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:44.007][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:44.009][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.010][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.011][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:44.012][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:44.013][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.015][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.016][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:44.017][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:44.018][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.020][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.021][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:44.022][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:44.023][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:44.025][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:44.026][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.027][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.028][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:44.029][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:44.031][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.032][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.033][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:44.035][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:44.036][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.037][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.038][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:44.040][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:44.041][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.042][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.044][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:44.046][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:44.048][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.050][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.052][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:44.053][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:44.054][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.056][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.057][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:44.058][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:44.059][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.061][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.062][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:44.063][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:44.064][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.065][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.067][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:44.068][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:44.069][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.070][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.071][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:44.073][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:44.074][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.075][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.076][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:44.078][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:44.079][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.080][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.081][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:44.082][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:44.084][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.085][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.086][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:44.087][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:44.088][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.090][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.091][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:44.092][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:44.093][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.094][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.096][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:44.097][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:44.098][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.099][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.101][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:44.102][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:44.103][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.104][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.106][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-10-14 11:10:44.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:44.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:44.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:44.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:44.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:44.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:44.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.127][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:44.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:44.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.134][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:44.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:44.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:44.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:44.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:44.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:44.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.152][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:44.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:44.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.159][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:44.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:44.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.168][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:44.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:44.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.174][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:44.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:44.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.181][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:44.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:44.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:44.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:44.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.194][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:44.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:44.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:44.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:44.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:44.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:44.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:44.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:44.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.216][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:44.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:44.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.222][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:44.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:44.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.227][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:44.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:44.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.232][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:44.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:44.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:44.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:44.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:44.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:44.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.248][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:44.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:44.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.254][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:44.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:44.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:44.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:44.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:44.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:44.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.270][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:44.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:44.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.276][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:44.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:44.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.281][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:44.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:44.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:44.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:44.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:44.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:44.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.297][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:44.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:44.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:44.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:44.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:44.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:44.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:44.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:44.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.319][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:44.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:44.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.324][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:44.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:44.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.330][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:44.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:44.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.335][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:44.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:44.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.341][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:44.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:44.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.348][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:44.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:44.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.354][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:44.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:44.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.359][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:44.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:44.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.364][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:44.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:44.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.370][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:44.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:44.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.386][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:44.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:44.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.396][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:44.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:44.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.415][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [168654162, 5-chloro-2-formamido-N,N-dimethyl-benzamide, 5-chloro-2-formamido-N,N-dimethylbenzamide, 5-chloro-2-formamido-N,N-dimethylbenzamide, 5-chloranyl-2-formamido-N,N-dimethyl-benzamide, ...].
biodb.DEBUG[2023-10-14 11:10:44.417][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:44.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:44.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:44.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:44.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:44.433][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:44.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:44.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:44.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:44.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:44.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:44.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:44.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:44.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.461][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:44.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:44.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.467][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:44.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:44.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:44.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:44.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.478][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:44.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:44.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:44.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:44.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.493][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:44.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:44.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.503][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:44.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:44.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.512][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:44.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:44.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.520][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:44.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:44.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.526][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:44.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:44.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.532][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:44.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:44.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.537][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:44.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:44.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.543][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:44.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:44.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:44.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:44.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.555][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:44.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:44.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.560][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:44.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:44.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.566][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:44.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:44.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:44.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:44.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.577][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:44.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:44.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:44.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:44.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:44.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:44.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.595][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:44.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:44.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.601][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:44.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:44.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.607][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:44.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:44.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.613][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:44.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:44.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.621][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:44.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:44.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.627][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:44.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:44.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.633][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:44.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:44.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.643][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:44.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:44.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.652][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:44.654][private$selectFields]
biodb.TRACE[2023-10-14 11:10:44.655][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:44.656][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:44.658][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:44.659][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:44.661][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:44.662][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.664][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.666][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:44.667][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:44.669][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.670][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.672][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:44.673][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:44.675][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.676][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.677][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:44.679][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:44.680][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.681][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.683][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:44.684][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:44.685][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.687][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.688][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:44.690][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:44.691][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.692][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.693][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:44.695][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:44.697][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.698][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.700][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:44.701][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:44.703][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.704][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.705][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:44.707][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:44.708][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.709][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.711][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:44.713][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:44.714][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.716][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.717][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:44.719][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:44.720][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.721][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.723][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:44.724][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:44.725][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.727][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.728][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:44.730][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:44.731][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.732][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.734][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:44.735][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:44.737][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.739][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.741][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:44.744][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:44.746][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.748][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.751][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:44.753][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:44.756][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.758][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.759][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:44.761][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:44.762][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.764][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.766][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:44.769][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:44.770][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.772][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.773][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:44.774][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:44.776][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.777][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.779][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:44.780][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:44.781][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.783][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.784][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:44.786][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:44.787][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.788][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.789][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:44.791][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:44.792][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.794][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.795][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:44.796][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:44.798][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.799][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.801][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:44.802][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:44.803][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.805][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.806][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:44.807][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:44.809][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.810][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.811][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:44.813][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:44.814][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.816][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.817][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:44.818][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:44.820][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.821][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.822][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:44.824][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:44.825][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.827][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.828][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:44.830][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:44.831][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.833][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.835][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:44.838][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:44.840][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.843][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.845][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:44.847][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:44.850][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.852][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.854][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:44.857][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:44.859][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.861][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.864][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:44.866][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:44.867][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:44.869][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:44.870][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.872][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.873][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:44.875][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:44.876][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.877][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.879][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:44.880][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:44.881][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.895][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.897][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:44.899][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:44.901][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.902][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.904][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:44.905][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:44.907][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.908][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.910][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:44.912][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:44.913][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.914][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.916][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:44.917][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:44.919][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.920][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.922][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:44.923][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:44.925][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.926][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.928][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:44.929][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:44.931][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.932][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.934][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:44.935][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:44.937][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.938][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.940][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:44.941][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:44.942][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.944][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.946][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:44.948][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:44.950][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.951][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.953][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:44.954][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:44.955][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.957][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.958][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:44.960][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:44.961][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.962][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.964][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:44.965][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:44.967][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.968][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.969][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:44.971][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:44.972][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.974][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.975][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-10-14 11:10:44.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:44.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:44.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:44.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:44.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:44.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:44.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:44.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:44.997][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:45.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:45.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:45.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:45.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:45.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:45.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.019][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:45.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:45.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:45.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:45.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.031][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:45.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:45.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.037][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:45.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:45.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.046][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:45.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:45.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.052][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:45.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:45.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.058][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:45.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:45.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:45.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:45.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:45.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:45.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.076][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:45.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:45.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:45.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:45.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.092][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:45.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:45.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.099][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:45.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:45.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.107][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:45.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:45.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.117][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:45.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:45.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.123][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:45.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:45.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:45.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:45.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.139][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:45.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:45.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.145][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:45.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:45.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.151][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:45.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:45.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.157][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:45.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:45.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.165][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:45.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:45.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.170][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:45.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:45.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.176][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:45.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:45.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:45.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:45.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:45.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:45.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:45.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:45.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:45.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:45.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:45.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:45.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:45.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:45.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.215][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:45.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:45.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.221][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:45.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:45.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.226][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:45.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:45.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.233][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:45.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:45.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.238][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:45.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:45.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.244][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:45.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:45.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.250][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:45.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:45.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.255][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:45.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:45.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.261][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:45.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:45.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.267][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:45.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:45.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.273][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:45.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:45.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.278][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:45.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:45.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.297][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [168652975, N-(2-chloro-4-formamido-phenyl)propanamide, N-(2-chloro-4-formamidophenyl)propanamide, N-(2-chloro-4-formamidophenyl)propanamide, N-(2-chloranyl-4-formamido-phenyl)propanamide, ...].
biodb.DEBUG[2023-10-14 11:10:45.300][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:45.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:45.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:45.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:45.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:45.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:45.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:45.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:45.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:45.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:45.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:45.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:45.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:45.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.339][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:45.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:45.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.347][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:45.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:45.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:45.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:45.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.358][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:45.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:45.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.364][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:45.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:45.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.373][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:45.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:45.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:45.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:45.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.398][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:45.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:45.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:45.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:45.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.409][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:45.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:45.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.414][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:45.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:45.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.420][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:45.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:45.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.425][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:45.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:45.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:45.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:45.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.435][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:45.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:45.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.441][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:45.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:45.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.448][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:45.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:45.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.453][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:45.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:45.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:45.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:45.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:45.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:45.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:45.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:45.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.476][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:45.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:45.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.481][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:45.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:45.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.486][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:45.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:45.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.492][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:45.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:45.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.497][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:45.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:45.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.502][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:45.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:45.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.507][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:45.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:45.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.513][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:45.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:45.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.518][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:45.519][private$selectFields]
biodb.TRACE[2023-10-14 11:10:45.521][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:45.522][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:45.523][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:45.525][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:45.526][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:45.527][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.529][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.530][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:45.531][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:45.533][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.534][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.535][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:45.537][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:45.538][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.539][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.540][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:45.542][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:45.543][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.544][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.546][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:45.547][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:45.548][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.550][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.551][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:45.552][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:45.554][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.555][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.556][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:45.557][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:45.559][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.560][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.561][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:45.563][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:45.564][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.565][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.566][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:45.568][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:45.569][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.570][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.572][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:45.573][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:45.574][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.576][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.577][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:45.578][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:45.580][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.581][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.582][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:45.584][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:45.585][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.586][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.588][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:45.590][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:45.593][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.595][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.597][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:45.600][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:45.602][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.604][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.606][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:45.608][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:45.609][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.610][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.612][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:45.613][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:45.615][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.616][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.619][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:45.621][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:45.623][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.626][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.628][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:45.629][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:45.630][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.632][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.633][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:45.634][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:45.636][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.637][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.638][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:45.639][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:45.641][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.642][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.643][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:45.645][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:45.646][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.647][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.648][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:45.650][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:45.651][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.652][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.653][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:45.655][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:45.656][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.657][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.659][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:45.662][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:45.664][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.666][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.669][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:45.671][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:45.672][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.674][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.675][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:45.677][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:45.678][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.679][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.681][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:45.682][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:45.684][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.685][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.686][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:45.688][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:45.689][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.690][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.691][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:45.693][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:45.694][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.695][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.696][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:45.698][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:45.699][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.700][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.701][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:45.703][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:45.704][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.705][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.707][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:45.708][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:45.709][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.711][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.713][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:45.714][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:45.716][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:45.717][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:45.718][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.720][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.721][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:45.722][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:45.723][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.725][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.726][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:45.727][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:45.728][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.730][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.731][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:45.732][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:45.733][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.735][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.736][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:45.737][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:45.738][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.739][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.741][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:45.742][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:45.743][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.744][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.746][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:45.747][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:45.748][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.749][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.751][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:45.752][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:45.753][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.754][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.756][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:45.757][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:45.758][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.759][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.761][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:45.762][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:45.763][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.764][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.766][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:45.767][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:45.768][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.770][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.772][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:45.773][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:45.774][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.776][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.777][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:45.778][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:45.779][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.781][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.782][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:45.783][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:45.784][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.786][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.787][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:45.788][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:45.789][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.790][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.792][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:45.793][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:45.794][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.795][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.797][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-10-14 11:10:45.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:45.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:45.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:45.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:45.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:45.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:45.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:45.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:45.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.820][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:45.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:45.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.833][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:45.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:45.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.839][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:45.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:45.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.845][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:45.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:45.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.850][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:45.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:45.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.855][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:45.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:45.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:45.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:45.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:45.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:45.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:45.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:45.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.878][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:45.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:45.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.883][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:45.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:45.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:45.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:45.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.893][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:45.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:45.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:45.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:45.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.904][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:45.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:45.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.910][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:45.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:45.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.915][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:45.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:45.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.921][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:45.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:45.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.926][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:45.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:45.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:45.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:45.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.936][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:45.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:45.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:45.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:45.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:45.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:45.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.951][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:45.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:45.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.957][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:45.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:45.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.962][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:45.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:45.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:45.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:45.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.973][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:45.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:45.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.977][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:45.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:45.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.983][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:45.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:45.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:45.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:45.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:45.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:45.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:45.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:45.997][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:45.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:46.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.003][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:46.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:46.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.008][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:46.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:46.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.014][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:46.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:46.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.019][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:46.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:46.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.024][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:46.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:46.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.029][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:46.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:46.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.034][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:46.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:46.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.039][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:46.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:46.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.044][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:46.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:46.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.048][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:46.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:46.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.053][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:46.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:46.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.066][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [168651635, N-(4,5-dimethoxy-2-nitro-phenyl)formamide, N-(4,5-dimethoxy-2-nitrophenyl)formamide, N-(4,5-dimethoxy-2-nitrophenyl)formamide, N-(4,5-dimethoxy-2-nitro-phenyl)methanamide, ...].
biodb.DEBUG[2023-10-14 11:10:46.067][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:46.068][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:10:46.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:46.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:46.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:46.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:46.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:46.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:46.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:46.127][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:46.131][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:46.133][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2023-10-14 11:10:46.134][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:46.136][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2023-10-14 11:10:46.139][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:46.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:46.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:46.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:46.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:46.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:46.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:46.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:46.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:46.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:46.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:46.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:46.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.166][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:46.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:46.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:46.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:46.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.176][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:46.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:46.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.181][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:46.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:46.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.186][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:46.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:46.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.190][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:46.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:46.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.195][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:46.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:46.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:46.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:46.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:46.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:46.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.210][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:46.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:46.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.224][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:46.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:46.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.229][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:46.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:46.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.234][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:46.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:46.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.239][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:46.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:46.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:46.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:46.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:46.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:46.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.254][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:46.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:46.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.260][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:46.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:46.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:46.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:46.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:46.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:46.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:46.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:46.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:46.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:46.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.285][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:46.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:46.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.290][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:46.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:46.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.295][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:46.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:46.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:46.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:46.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.305][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:46.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:46.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.310][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:46.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:46.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.315][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:46.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:46.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.320][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:46.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:46.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.325][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:46.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:46.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.330][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:46.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:46.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.335][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:46.337][private$selectFields]
biodb.TRACE[2023-10-14 11:10:46.338][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:46.339][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:46.340][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:46.341][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:46.343][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:46.344][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.345][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.346][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:46.348][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:46.349][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.350][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.351][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:46.352][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:46.354][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.355][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.356][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:46.357][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:46.358][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.360][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.361][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:46.362][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:46.363][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.364][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.366][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:46.367][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:46.368][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.369][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.371][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:46.372][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:46.373][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.374][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.375][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:46.377][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:46.378][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.379][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.380][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:46.381][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:46.383][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.384][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.385][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:46.386][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:46.387][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.389][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.390][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:46.391][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:46.392][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.393][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.395][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:46.396][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:46.398][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.399][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.401][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:46.403][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:46.404][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.406][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.407][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:46.409][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:46.410][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.411][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.413][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:46.414][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:46.415][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.416][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.417][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:46.419][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:46.420][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.421][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.422][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:46.424][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:46.425][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.426][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.427][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:46.429][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:46.430][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.431][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.432][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:46.434][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:46.435][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.436][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.437][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:46.438][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:46.439][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.441][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.442][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:46.443][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:46.444][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.445][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.447][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:46.448][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:46.449][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.450][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.451][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:46.453][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:46.454][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.455][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.456][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:46.457][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:46.459][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.460][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.461][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:46.462][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:46.463][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.464][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.466][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:46.467][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:46.468][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.469][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.470][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:46.472][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:46.473][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.474][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.475][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:46.477][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:46.478][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.479][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.480][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:46.481][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:46.483][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.484][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.485][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:46.486][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:46.487][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.489][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.490][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:46.491][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:46.492][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.493][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.495][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:46.496][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:46.497][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.498][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.499][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:46.501][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:46.502][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.503][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.504][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:46.505][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:46.506][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.508][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.509][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:46.510][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:46.511][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:46.513][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:46.514][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.515][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.516][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:46.518][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:46.519][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.520][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.521][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:46.523][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:46.524][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.525][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.526][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:46.528][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:46.529][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.530][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.531][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:46.532][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:46.533][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.535][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.536][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:46.537][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:46.538][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.539][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.541][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:46.542][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:46.543][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.544][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.545][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:46.547][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:46.548][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.549][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.550][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:46.551][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:46.552][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.554][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.555][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:46.556][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:46.557][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.558][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.560][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:46.561][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:46.562][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.563][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.564][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:46.566][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:46.567][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.568][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.569][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:46.571][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:46.572][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.573][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.574][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:46.575][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:46.576][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.578][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.579][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:46.580][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:46.581][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.582][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.584][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:46.585][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:46.586][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.587][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.588][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-10-14 11:10:46.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:46.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:46.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:46.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:46.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:46.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:46.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.613][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:46.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:46.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:46.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:46.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:46.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:46.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:46.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:46.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.634][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:46.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:46.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:46.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:46.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:46.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:46.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.649][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:46.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:46.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.654][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:46.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:46.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.659][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:46.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:46.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.664][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:46.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:46.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.669][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:46.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:46.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.674][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:46.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:46.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.679][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:46.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:46.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.684][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:46.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:46.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.689][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:46.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:46.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.694][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:46.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:46.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.699][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:46.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:46.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.704][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:46.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:46.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.709][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:46.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:46.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.714][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:46.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:46.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.719][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:46.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:46.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.724][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:46.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:46.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.729][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:46.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:46.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.734][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:46.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:46.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.741][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:46.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:46.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.750][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:46.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:46.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:46.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:46.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:46.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:46.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:46.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:46.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.772][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:46.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:46.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:46.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:46.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.787][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:46.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:46.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.793][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:46.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:46.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.798][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:46.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:46.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.803][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:46.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:46.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.809][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:46.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:46.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.814][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:46.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:46.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.819][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:46.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:46.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.826][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:46.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:46.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.832][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:46.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:46.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.837][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:46.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:46.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.842][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:46.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:46.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.847][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:46.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:46.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.853][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:46.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:46.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.868][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [168654156, N-(2-methyl-3-pyrrolidin-1-yl-phenyl)formamide, N-[2-methyl-3-(1-pyrrolidinyl)phenyl]formamide, N-(2-methyl-3-pyrrolidin-1-ylphenyl)formamide, N-(2-methyl-3-pyrrolidin-1-yl-phenyl)methanamide, ...].
biodb.DEBUG[2023-10-14 11:10:46.870][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:46.872][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:46.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:46.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:46.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:46.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:46.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:46.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:46.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:46.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:46.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:46.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:46.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:46.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.911][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:46.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:46.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.917][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:46.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:46.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.924][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:46.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:46.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.930][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:46.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:46.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.935][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:46.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:46.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.940][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:46.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:46.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.945][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:46.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:46.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.950][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:46.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:46.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.956][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:46.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:46.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.964][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:46.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:46.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.971][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:46.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:46.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.978][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:46.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:46.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:46.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:46.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.991][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:46.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:46.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:46.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:46.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:46.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:47.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.005][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:47.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:47.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.012][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:47.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:47.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:47.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:47.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:47.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:47.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:47.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:47.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:47.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:47.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.043][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:47.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:47.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.063][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:47.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:47.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.071][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:47.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:47.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.080][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:47.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:47.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.087][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:47.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:47.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.092][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:47.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:47.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.098][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:47.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:47.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.104][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:47.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:47.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.109][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:47.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:47.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.115][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:47.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:47.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.121][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:47.123][private$selectFields]
biodb.TRACE[2023-10-14 11:10:47.125][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:47.127][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:47.128][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:47.130][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:47.131][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:47.132][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.134][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.135][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:47.136][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:47.137][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.139][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.141][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:47.144][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:47.146][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.147][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.148][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:47.151][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:47.153][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.155][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.157][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:47.159][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:47.160][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.162][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.165][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:47.167][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:47.168][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.169][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.170][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:47.172][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:47.173][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.174][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.175][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:47.177][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:47.178][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.179][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.181][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:47.182][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:47.183][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.184][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.186][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:47.187][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:47.188][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.189][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.190][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:47.192][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:47.193][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.194][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.195][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:47.197][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:47.198][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.199][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.200][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:47.202][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:47.203][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.205][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.207][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:47.208][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:47.209][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.211][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.212][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:47.213][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:47.215][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.216][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.217][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:47.218][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:47.220][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.221][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.222][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:47.224][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:47.225][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.227][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.228][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:47.229][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:47.231][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.232][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.233][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:47.234][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:47.236][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.237][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.238][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:47.239][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:47.241][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.242][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.243][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:47.244][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:47.245][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.247][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.248][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:47.249][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:47.250][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.252][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.253][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:47.255][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:47.257][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.258][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.260][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:47.261][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:47.262][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.263][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.264][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:47.266][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:47.267][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.268][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.269][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:47.271][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:47.272][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.273][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.274][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:47.276][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:47.277][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.278][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.279][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:47.280][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:47.282][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.283][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.284][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:47.285][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:47.287][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.288][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.289][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:47.290][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:47.292][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.293][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.294][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:47.295][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:47.296][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.298][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.299][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:47.300][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:47.302][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.303][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.304][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:47.305][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:47.306][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.308][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.309][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:47.310][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:47.311][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.312][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.314][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:47.315][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:47.316][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:47.318][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:47.319][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.320][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.321][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:47.322][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:47.323][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.325][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.326][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:47.327][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:47.328][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.329][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.331][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:47.332][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:47.334][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.335][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.336][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:47.338][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:47.339][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.340][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.341][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:47.343][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:47.344][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.345][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.346][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:47.347][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:47.349][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.350][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.352][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:47.354][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:47.355][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.356][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.358][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:47.359][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:47.360][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.362][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.363][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:47.365][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:47.366][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.367][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.369][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:47.370][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:47.371][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.373][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.374][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:47.376][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:47.377][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.379][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.380][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:47.382][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:47.383][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.384][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.386][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:47.387][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:47.389][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.390][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.392][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:47.393][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:47.395][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.396][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.397][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:47.399][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:47.400][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.402][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.403][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-10-14 11:10:47.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:47.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:47.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:47.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:47.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:47.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:47.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.426][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:47.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:47.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:47.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:47.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:47.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:47.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.445][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:47.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:47.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:47.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:47.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:47.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:47.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.461][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:47.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:47.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.467][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:47.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:47.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:47.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:47.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:47.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:47.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.485][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:47.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:47.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.491][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:47.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:47.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.497][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:47.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:47.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.512][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:47.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:47.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:47.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:47.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.525][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:47.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:47.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.531][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:47.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:47.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.537][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:47.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:47.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:47.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:47.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.548][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:47.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:47.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.553][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:47.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:47.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:47.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:47.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.563][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:47.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:47.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.569][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:47.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:47.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.574][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:47.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:47.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.579][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:47.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:47.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.584][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:47.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:47.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:47.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:47.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:47.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:47.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:47.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:47.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:47.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:47.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:47.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:47.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:47.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:47.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.624][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:47.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:47.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.629][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:47.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:47.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.634][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:47.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:47.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.639][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:47.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:47.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.644][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:47.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:47.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.649][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:47.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:47.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.654][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:47.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:47.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.659][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:47.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:47.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.664][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:47.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:47.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.670][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:47.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:47.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.675][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:47.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:47.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.680][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:47.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:47.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.693][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [168653588, N-[2-(cyclopentylamino)phenyl]formamide, N-[2-(cyclopentylamino)phenyl]formamide, N-[2-(cyclopentylamino)phenyl]formamide, N-[2-(cyclopentylamino)phenyl]methanamide, ...].
biodb.DEBUG[2023-10-14 11:10:47.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:47.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:47.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:47.704][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:47.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:47.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:47.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:47.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:47.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:47.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:47.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:47.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:47.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:47.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.725][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:47.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:47.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:47.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:47.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.735][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:47.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:47.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.740][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:47.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:47.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.746][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:47.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:47.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.751][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:47.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:47.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.756][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:47.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:47.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:47.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:47.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.766][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:47.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:47.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.771][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:47.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:47.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.776][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:47.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:47.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:47.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:47.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:47.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:47.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.791][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:47.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:47.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.796][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:47.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:47.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.801][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:47.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:47.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.806][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:47.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:47.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:47.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:47.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:47.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:47.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:47.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:47.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:47.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:47.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.830][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:47.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:47.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.835][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:47.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:47.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.840][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:47.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:47.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.846][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:47.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:47.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.851][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:47.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:47.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.856][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:47.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:47.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.861][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:47.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:47.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.866][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:47.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:47.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.871][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:47.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:47.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.876][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:47.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:47.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.881][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:47.882][private$selectFields]
biodb.TRACE[2023-10-14 11:10:47.883][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:47.884][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:47.885][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:47.887][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:47.888][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:47.889][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.890][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.892][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:47.893][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:47.894][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.895][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.896][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:47.898][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:47.899][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.900][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.909][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:47.911][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:47.912][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.914][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.915][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:47.917][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:47.918][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.920][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.921][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:47.922][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:47.923][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.925][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.926][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:47.927][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:47.929][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.930][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.931][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:47.932][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:47.934][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.935][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.936][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:47.937][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:47.939][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.940][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.941][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:47.942][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:47.944][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.945][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.946][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:47.947][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:47.949][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.950][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.951][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:47.952][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:47.954][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.955][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.956][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:47.957][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:47.959][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.960][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.961][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:47.963][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:47.964][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.965][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.966][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:47.968][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:47.969][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.970][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.971][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:47.973][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:47.974][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.975][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.976][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:47.977][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:47.979][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.980][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.981][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:47.982][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:47.984][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.985][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.986][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:47.987][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:47.989][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.990][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.991][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:47.992][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:47.994][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:47.995][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:47.996][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:47.997][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:47.998][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.000][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.001][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:48.002][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:48.003][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.005][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.006][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:48.007][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:48.008][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.009][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.011][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:48.012][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:48.013][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.014][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.016][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:48.017][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:48.018][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.019][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.020][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:48.022][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:48.023][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.024][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.025][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:48.027][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:48.028][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.029][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.030][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:48.032][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:48.033][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.034][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.035][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:48.036][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:48.038][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.039][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.040][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:48.041][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:48.043][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.044][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.045][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:48.046][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:48.047][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.049][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.050][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:48.051][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:48.052][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.054][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.055][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:48.056][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:48.057][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.059][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.060][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:48.061][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:48.062][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.064][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.065][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:48.066][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:48.067][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:48.069][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:48.070][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.071][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.072][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:48.074][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:48.075][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.076][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.077][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:48.079][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:48.080][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.081][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.082][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:48.084][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:48.085][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.086][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.087][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:48.089][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:48.090][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.091][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.092][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:48.094][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:48.095][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.096][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.097][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:48.099][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:48.100][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.101][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.102][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:48.104][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:48.105][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.106][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.107][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:48.109][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:48.110][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.111][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.112][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:48.113][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:48.115][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.117][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.119][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:48.121][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:48.122][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.123][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.125][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:48.126][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:48.127][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.128][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.130][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:48.131][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:48.132][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.133][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.135][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:48.136][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:48.137][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.138][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.140][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:48.141][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:48.142][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.143][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.145][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:48.146][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:48.147][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.148][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.150][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-10-14 11:10:48.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:48.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:48.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:48.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:48.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:48.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:48.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.167][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:48.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:48.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.172][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:48.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:48.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:48.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:48.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.182][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:48.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:48.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.187][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:48.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:48.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.192][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:48.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:48.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.198][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:48.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:48.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.203][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:48.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:48.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:48.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:48.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.213][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:48.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:48.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.218][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:48.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:48.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.223][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:48.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:48.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.228][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:48.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:48.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.233][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:48.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:48.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.238][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:48.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:48.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.244][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:48.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:48.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.249][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:48.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:48.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.254][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:48.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:48.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:48.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:48.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:48.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:48.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.270][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:48.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:48.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.275][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:48.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:48.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.280][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:48.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:48.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.285][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:48.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:48.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.291][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:48.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:48.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.296][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:48.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:48.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.309][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:48.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:48.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:48.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:48.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:48.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:48.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:48.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:48.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:48.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:48.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:48.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:48.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:48.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:48.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.348][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:48.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:48.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.353][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:48.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:48.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.358][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:48.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:48.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.364][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:48.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:48.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.369][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:48.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:48.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.374][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:48.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:48.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.380][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:48.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:48.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.385][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:48.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:48.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.390][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:48.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:48.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.395][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:48.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:48.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.400][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:48.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:48.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.405][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:48.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:48.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.418][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [168651976, N-(1,3,3-trimethylindolin-5-yl)formamide, N-(1,3,3-trimethyl-2H-indol-5-yl)formamide, N-(1,3,3-trimethyl-2H-indol-5-yl)formamide, N-(1,3,3-trimethyl-2H-indol-5-yl)methanamide, ...].
biodb.DEBUG[2023-10-14 11:10:48.420][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:48.421][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:10:48.425][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:48.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:48.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:48.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:48.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:48.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:48.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:48.477][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-10-14 11:10:48.481][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:10:48.482][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2023-10-14 11:10:48.484][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:48.486][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2023-10-14 11:10:48.489][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:10:48.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:48.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:48.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:48.501][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:48.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:48.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:48.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:48.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:48.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:48.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:48.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:48.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:48.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:48.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:48.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:48.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:48.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:48.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:48.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:48.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.538][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:48.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:48.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:48.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:48.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:48.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:48.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.554][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:48.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:48.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:48.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:48.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.564][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:48.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:48.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.569][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:48.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:48.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.574][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:48.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:48.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:48.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:48.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:48.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:48.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.588][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:48.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:48.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.593][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:48.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:48.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.598][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:48.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:48.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.603][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:48.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:48.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:48.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:48.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:48.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:48.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:48.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:48.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:48.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:48.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.628][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:48.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:48.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.633][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:48.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:48.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.638][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:48.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:48.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.644][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:48.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:48.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.651][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:48.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:48.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.656][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:48.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:48.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.664][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:48.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:48.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.669][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:48.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:48.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.674][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:48.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:48.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.679][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:48.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:48.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.684][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:48.685][private$selectFields]
biodb.TRACE[2023-10-14 11:10:48.686][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:48.687][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:48.688][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:48.690][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:48.691][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:48.692][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.694][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.695][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:48.696][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:48.705][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.707][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.710][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:48.712][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:48.713][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.715][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.716][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:48.717][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:48.718][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.720][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.721][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:48.723][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:48.724][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.725][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.726][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:48.728][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:48.729][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.730][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.731][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:48.733][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:48.734][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.735][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.737][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:48.738][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:48.740][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.741][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.743][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:48.744][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:48.745][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.746][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.748][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:48.749][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:48.750][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.751][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.753][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:48.756][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:48.757][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.758][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.759][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:48.761][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:48.762][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.763][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.765][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:48.766][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:48.767][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.769][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.770][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:48.771][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:48.772][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.774][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.775][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:48.776][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:48.777][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.779][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.780][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:48.781][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:48.783][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.786][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.788][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:48.790][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:48.792][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.793][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.795][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:48.796][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:48.798][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.799][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.800][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:48.802][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:48.803][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.805][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.806][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:48.808][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:48.809][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.810][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.812][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:48.813][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:48.816][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.817][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.818][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:48.820][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:48.821][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.822][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.824][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:48.826][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:48.827][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.828][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.829][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:48.831][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:48.832][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.833][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.835][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:48.836][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:48.837][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.839][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.840][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:48.841][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:48.843][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.844][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.845][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:48.847][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:48.848][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.849][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.851][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:48.852][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:48.853][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.855][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.856][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:48.857][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:48.859][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.860][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.861][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:48.863][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:48.864][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.865][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.867][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:48.868][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:48.869][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.871][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.872][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:48.874][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:48.875][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.876][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.878][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:48.880][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:48.881][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.882][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.884][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:48.885][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:48.887][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.888][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.889][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:48.891][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:48.892][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:48.894][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:48.895][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.896][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.897][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:48.899][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:48.900][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.902][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.903][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:48.904][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:48.906][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.907][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.908][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:48.910][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:48.911][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.912][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.914][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:48.915][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:48.916][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.918][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.919][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:48.920][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:48.922][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.923][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.925][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:48.927][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:48.929][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.931][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.934][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:48.936][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:48.938][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.940][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.942][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:48.945][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:48.947][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.949][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.951][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:48.952][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:48.954][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.955][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.957][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:48.960][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:48.962][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.964][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.966][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:48.969][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:48.970][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.971][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.973][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:48.974][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:48.976][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.977][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.978][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:48.980][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:48.981][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.982][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.983][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:48.985][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:48.986][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.988][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.989][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:48.990][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:48.992][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:48.993][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:48.995][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-10-14 11:10:48.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:48.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:48.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:49.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:49.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:49.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:49.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:49.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:49.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.018][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:49.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:49.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.024][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:49.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:49.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:49.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:49.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:49.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:49.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.040][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:49.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:49.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.046][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:49.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:49.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.051][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:49.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:49.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.058][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:49.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:49.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:49.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:49.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:49.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:49.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.075][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:49.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:49.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:49.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:49.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.086][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:49.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:49.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.091][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:49.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:49.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.097][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:49.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:49.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.103][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:49.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:49.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.109][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:49.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:49.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.114][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:49.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:49.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:49.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:49.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:49.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:49.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.131][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:49.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:49.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.136][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:49.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:49.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:49.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:49.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.148][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:49.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:49.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.163][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:49.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:49.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.169][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:49.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:49.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:49.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:49.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.183][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:49.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:49.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:49.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:49.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:49.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:49.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:49.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:49.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:49.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:49.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.212][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:49.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:49.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.219][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:49.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:49.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.225][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:49.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:49.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.231][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:49.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:49.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.237][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:49.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:49.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.243][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:49.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:49.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.248][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:49.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:49.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.254][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:49.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:49.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.260][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:49.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:49.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.265][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:49.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:49.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.271][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:49.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:49.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.278][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:49.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:49.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.292][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [168654162, 5-chloro-2-formamido-N,N-dimethyl-benzamide, 5-chloro-2-formamido-N,N-dimethylbenzamide, 5-chloro-2-formamido-N,N-dimethylbenzamide, 5-chloranyl-2-formamido-N,N-dimethyl-benzamide, ...].
biodb.DEBUG[2023-10-14 11:10:49.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:49.296][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:49.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:49.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:49.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:49.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:49.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:49.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:49.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:49.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:49.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:49.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.324][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:49.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:49.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:49.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:49.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:49.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:49.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.341][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:49.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:49.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.348][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:49.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:49.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:49.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:49.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:49.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:49.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.366][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:49.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:49.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.372][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:49.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:49.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.378][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:49.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:49.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.389][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:49.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:49.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.396][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:49.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:49.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:49.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:49.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:49.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:49.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:49.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:49.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.421][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:49.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:49.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.426][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:49.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:49.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.431][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:49.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:49.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:49.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:49.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:49.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:49.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:49.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:49.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:49.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:49.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.460][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:49.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:49.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.465][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:49.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:49.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.473][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:49.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:49.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.481][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:49.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:49.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.486][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:49.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:49.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.492][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:49.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:49.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.497][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:49.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:49.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.504][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:49.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:49.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.512][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:49.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:49.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.517][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:49.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:49.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.522][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:49.524][private$selectFields]
biodb.TRACE[2023-10-14 11:10:49.525][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:49.526][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:49.527][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:49.529][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:49.530][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:49.531][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.533][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.534][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:49.535][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:49.536][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.538][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.539][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:49.541][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:49.542][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.543][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.544][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:49.546][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:49.547][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.548][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.549][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:49.551][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:49.553][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.554][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.556][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:49.557][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:49.559][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.560][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.561][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:49.562][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:49.564][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.565][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.566][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:49.567][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:49.568][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.570][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.571][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:49.572][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:49.574][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.575][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.576][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:49.577][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:49.579][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.580][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.581][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:49.582][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:49.584][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.585][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.586][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:49.588][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:49.589][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.590][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.591][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:49.593][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:49.594][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.595][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.597][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:49.598][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:49.599][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.601][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.602][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:49.603][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:49.604][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.613][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.615][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:49.617][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:49.618][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.620][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.621][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:49.622][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:49.624][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.625][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.626][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:49.628][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:49.629][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.630][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.631][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:49.633][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:49.634][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.635][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.637][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:49.638][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:49.639][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.640][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.642][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:49.643][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:49.644][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.645][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.647][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:49.648][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:49.649][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.651][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.652][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:49.653][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:49.655][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.656][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.657][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:49.658][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:49.660][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.661][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.662][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:49.664][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:49.665][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.666][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.668][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:49.669][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:49.670][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.672][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.673][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:49.674][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:49.675][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.677][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.678][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:49.679][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:49.680][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.682][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.683][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:49.684][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:49.686][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.687][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.688][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:49.690][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:49.691][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.692][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.694][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:49.695][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:49.696][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.698][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.699][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:49.700][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:49.702][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.703][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.704][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:49.706][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:49.708][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.710][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.712][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:49.715][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:49.717][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.718][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.720][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:49.721][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:49.722][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:49.724][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:49.725][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.726][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.728][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:49.729][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:49.731][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.732][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.734][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:49.735][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:49.737][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.739][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.740][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:49.742][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:49.743][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.744][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.745][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:49.747][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:49.748][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.750][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.751][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:49.752][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:49.754][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.755][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.756][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:49.758][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:49.759][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.761][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.762][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:49.763][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:49.764][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.766][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.767][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:49.769][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:49.770][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.771][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.773][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:49.774][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:49.775][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.777][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.778][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:49.780][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:49.782][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.784][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.786][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:49.788][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:49.790][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.792][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.794][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:49.796][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:49.798][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.799][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.800][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:49.801][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:49.803][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.804][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.805][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:49.807][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:49.808][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.809][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.810][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:49.812][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:49.813][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.814][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.815][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-10-14 11:10:49.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:49.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:49.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:49.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:49.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:49.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:49.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.832][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:49.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:49.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.837][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:49.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:49.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.842][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:49.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:49.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:49.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:49.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.853][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:49.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:49.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:49.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:49.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:49.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:49.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.868][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:49.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:49.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:49.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:49.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.878][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:49.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:49.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.883][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:49.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:49.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:49.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:49.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.894][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:49.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:49.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.899][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:49.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:49.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:49.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:49.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.909][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:49.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:49.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.914][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:49.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:49.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.919][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:49.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:49.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.925][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:49.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:49.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.930][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:49.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:49.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:49.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:49.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:49.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:49.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:49.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:49.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:49.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:49.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.956][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:49.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:49.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.961][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:49.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:49.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.966][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:49.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:49.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:49.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:49.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.976][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:49.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:49.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:49.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:49.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:49.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:49.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:49.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:49.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:50.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:50.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:50.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:50.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.012][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:50.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:50.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.017][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:50.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:50.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.022][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:50.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:50.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.027][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:50.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:50.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.033][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:50.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:50.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.051][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:50.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:50.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.058][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:50.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:50.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.064][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:50.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:50.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.069][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:50.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:50.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.075][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:50.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:50.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.080][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:50.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:50.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.085][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:50.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:50.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.098][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [168652975, N-(2-chloro-4-formamido-phenyl)propanamide, N-(2-chloro-4-formamidophenyl)propanamide, N-(2-chloro-4-formamidophenyl)propanamide, N-(2-chloranyl-4-formamido-phenyl)propanamide, ...].
biodb.DEBUG[2023-10-14 11:10:50.100][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:50.101][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:50.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:50.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:50.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:50.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:50.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:50.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:50.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:50.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:50.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:50.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.132][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:50.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:50.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.137][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:50.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:50.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.142][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:50.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:50.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:50.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:50.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.152][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:50.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:50.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:50.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:50.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.161][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:50.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:50.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.167][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:50.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:50.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.172][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:50.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:50.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:50.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:50.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.181][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:50.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:50.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.186][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:50.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:50.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.191][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:50.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:50.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.196][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:50.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:50.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.201][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:50.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:50.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.206][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:50.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:50.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.211][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:50.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:50.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.216][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:50.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:50.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:50.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:50.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:50.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:50.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:50.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:50.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:50.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:50.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.240][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:50.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:50.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.245][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:50.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:50.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.250][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:50.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:50.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.255][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:50.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:50.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.259][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:50.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:50.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.264][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:50.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:50.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.269][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:50.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:50.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.274][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:50.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:50.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.279][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:50.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:50.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.284][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:50.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:50.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.289][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:50.290][private$selectFields]
biodb.TRACE[2023-10-14 11:10:50.291][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:10:50.292][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:10:50.293][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:50.295][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:50.296][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:50.297][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.298][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.299][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:50.301][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:50.302][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.303][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.304][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:50.306][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:50.307][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.308][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.309][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:50.310][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:50.312][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.313][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.314][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:50.315][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:50.316][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.317][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.319][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:50.320][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:50.321][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.322][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.323][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:50.325][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:50.326][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.327][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.328][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:50.329][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:50.331][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.332][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.333][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:50.334][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:50.335][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.336][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.338][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:50.339][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:50.340][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.341][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.342][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:50.344][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:50.345][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.346][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.347][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:50.348][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:50.349][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.351][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.352][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:50.353][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:50.354][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.355][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.357][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:50.358][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:50.359][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.360][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.361][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:50.363][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:50.364][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.365][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.366][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:50.367][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:50.369][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.370][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.371][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:50.372][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:50.373][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.374][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.376][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:50.377][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:50.378][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.379][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.380][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:50.382][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:50.383][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.384][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.385][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:50.386][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:50.387][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.389][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.390][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:50.391][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:50.392][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.393][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.395][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:50.396][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:50.397][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.398][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.399][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:50.401][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:50.402][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.403][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.404][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:50.405][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:50.406][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.408][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.409][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:50.410][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:50.411][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.412][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.413][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:50.415][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:50.416][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.417][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.418][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:50.419][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:50.421][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.422][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.423][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:50.424][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:50.425][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.434][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.435][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:50.437][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:50.439][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.440][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.441][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:50.442][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:50.444][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.445][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.446][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:50.447][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:50.449][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.450][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.451][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:50.452][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:50.453][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.455][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.456][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:50.457][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:50.458][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.459][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.461][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:10:50.462][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:10:50.463][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.464][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.466][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:50.467][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-10-14 11:10:50.468][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:50.469][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:50.470][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.472][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.473][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:50.474][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:50.475][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.477][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.478][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:50.479][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:50.480][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.481][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.483][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:50.484][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:50.485][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.486][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.488][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:50.489][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:50.490][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.491][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.492][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:50.493][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:50.495][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.496][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.497][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:50.498][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:50.499][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.501][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.502][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:50.503][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:50.504][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.506][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.507][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:50.509][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:50.510][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.512][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.514][ef$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:50.517][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:50.520][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.522][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.523][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:50.524][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:50.526][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.527][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.529][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:50.530][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:50.531][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.532][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.534][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:50.535][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:50.536][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.537][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.538][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:50.540][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:50.541][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.542][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.544][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:50.545][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:50.546][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.547][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.548][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:50.550][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:50.551][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.552][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.553][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-10-14 11:10:50.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:50.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:50.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:50.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:50.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:50.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:50.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.576][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:50.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:50.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.581][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:50.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:50.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.586][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:50.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-10-14 11:10:50.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:50.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:50.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.596][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:50.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:50.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.601][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:50.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-10-14 11:10:50.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:50.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:50.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.616][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:50.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:50.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.621][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:50.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-10-14 11:10:50.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:50.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:50.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.631][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:50.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:50.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:50.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-10-14 11:10:50.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.642][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:50.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:50.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.647][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:50.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:50.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.652][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:50.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-10-14 11:10:50.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.658][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:50.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:50.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.663][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:50.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:50.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.669][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:10:50.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:10:50.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:50.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:50.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:50.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:50.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.685][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:10:50.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:10:50.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.690][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:50.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:50.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.695][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:50.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:50.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.700][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:10:50.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:10:50.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.705][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:50.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:50.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.710][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:50.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:50.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.716][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-10-14 11:10:50.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-10-14 11:10:50.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:50.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:50.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:50.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:50.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:50.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:10:50.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:50.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:50.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:50.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:50.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:50.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:10:50.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.753][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:50.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:50.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.757][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:50.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:50.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.763][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:10:50.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:10:50.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.768][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:50.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:50.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.774][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:50.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:50.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.779][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:50.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:50.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.785][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:50.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:50.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.789][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:50.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:50.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.795][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:50.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-10-14 11:10:50.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.800][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:50.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:50.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.805][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:50.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:50.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.811][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:50.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-10-14 11:10:50.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.826][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [168651635, N-(4,5-dimethoxy-2-nitro-phenyl)formamide, N-(4,5-dimethoxy-2-nitrophenyl)formamide, N-(4,5-dimethoxy-2-nitrophenyl)formamide, N-(4,5-dimethoxy-2-nitro-phenyl)methanamide, ...].
biodb.DEBUG[2023-10-14 11:10:50.827][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:10:50.828][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-10-14 11:10:50.842][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-10-14 11:10:50.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-10-14 11:10:50.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:50.849][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-10-14 11:10:50.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-10-14 11:10:50.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:50.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-10-14 11:10:50.859][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2023-10-14 11:10:50.861][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.comp from the request scheduler
biodb.INFO [2023-10-14 11:10:50.863][self$deleteConn] Connector "ncbi.pubchem.comp" deleted.
biodb.DEBUG[2023-10-14 11:10:50.864][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2023-10-14 11:10:50.866][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:50.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:50.868][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:50.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:50.871][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:50.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2023-10-14 11:10:50.877][biodb::testContext]
biodb.INFO [2023-10-14 11:10:50.878][biodb::testContext] ********************************************************************************
biodb.INFO [2023-10-14 11:10:50.879][biodb::testContext] Test context - Pubchem Subst long tests
biodb.INFO [2023-10-14 11:10:50.881][biodb::testContext] ********************************************************************************
biodb.INFO [2023-10-14 11:10:50.882][biodb::testContext]
biodb.INFO [2023-10-14 11:10:50.885][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.8.1.
biodb.DEBUG[2023-10-14 11:10:50.887][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.17-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2023-10-14 11:10:50.893][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-10-14 11:10:50.894][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2023-10-14 11:10:50.896][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2023-10-14 11:10:50.897][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:50.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:50.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:50.900][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2023-10-14 11:10:50.918][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2023-10-14 11:10:50.919][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:50.921][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:50.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:50.923][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2023-10-14 11:10:50.924][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2023-10-14 11:10:50.926][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:50.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:50.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:50.929][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2023-10-14 11:10:50.930][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2023-10-14 11:10:50.932][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2023-10-14 11:10:50.933][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:50.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:50.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:50.936][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2023-10-14 11:10:50.938][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2023-10-14 11:10:50.939][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2023-10-14 11:10:50.940][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:50.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:50.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:50.943][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2023-10-14 11:10:50.945][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2023-10-14 11:10:50.946][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:50.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:50.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:50.949][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2023-10-14 11:10:50.950][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2023-10-14 11:10:50.952][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2023-10-14 11:10:50.953][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:50.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:50.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:50.957][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2023-10-14 11:10:50.958][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2023-10-14 11:10:50.959][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:50.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:50.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:50.963][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2023-10-14 11:10:50.965][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2023-10-14 11:10:50.966][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2023-10-14 11:10:50.967][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:50.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:50.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:50.970][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2023-10-14 11:10:50.972][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2023-10-14 11:10:50.973][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2023-10-14 11:10:50.974][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2023-10-14 11:10:50.975][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2023-10-14 11:10:50.977][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2023-10-14 11:10:50.978][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:50.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:50.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:50.984][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2023-10-14 11:10:50.985][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2023-10-14 11:10:50.987][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:50.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:50.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:50.990][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2023-10-14 11:10:50.991][self$set] Set key entries.sep to "|".
biodb.DEBUG[2023-10-14 11:10:50.992][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:50.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:50.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:50.997][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2023-10-14 11:10:50.999][self$set] Set key offline to FALSE.
biodb.DEBUG[2023-10-14 11:10:51.000][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.005][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2023-10-14 11:10:51.007][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2023-10-14 11:10:51.008][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.011][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2023-10-14 11:10:51.012][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2023-10-14 11:10:51.014][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.017][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2023-10-14 11:10:51.019][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2023-10-14 11:10:51.023][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2023-10-14 11:10:51.025][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.028][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2023-10-14 11:10:51.030][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2023-10-14 11:10:51.031][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2023-10-14 11:10:51.032][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.036][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2023-10-14 11:10:51.038][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-10-14 11:10:51.057][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2023-10-14 11:10:51.059][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.061][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-10-14 11:10:51.063][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.065][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-10-14 11:10:51.066][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-10-14 11:10:51.069][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-10-14 11:10:51.070][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-10-14 11:10:51.072][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-10-14 11:10:51.074][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.076][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2023-10-14 11:10:51.077][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-10-14 11:10:51.079][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:10:51.081][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.082][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-10-14 11:10:51.082][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-10-14 11:10:51.082][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-10-14 11:10:51.082][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-10-14 11:10:51.082][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-10-14 11:10:51.084][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-10-14 11:10:51.086][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:10:51.087][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:10:51.088][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-10-14 11:10:51.089][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:10:51.090][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:10:51.092][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-10-14 11:10:51.093][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:10:51.094][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-10-14 11:10:51.095][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-10-14 11:10:51.097][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-10-14 11:10:51.098][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:10:51.100][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2023-10-14 11:10:51.102][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-10-14 11:10:51.103][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2023-10-14 11:10:51.105][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.106][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-10-14 11:10:51.107][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.109][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-10-14 11:10:51.110][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-10-14 11:10:51.112][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-10-14 11:10:51.113][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-10-14 11:10:51.114][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-10-14 11:10:51.116][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.117][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2023-10-14 11:10:51.118][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-10-14 11:10:51.120][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:10:51.121][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.122][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-10-14 11:10:51.122][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-10-14 11:10:51.122][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-10-14 11:10:51.122][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-10-14 11:10:51.122][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-10-14 11:10:51.124][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-10-14 11:10:51.125][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:10:51.126][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:10:51.127][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-10-14 11:10:51.129][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:10:51.130][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:10:51.131][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-10-14 11:10:51.133][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:10:51.134][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-10-14 11:10:51.135][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-10-14 11:10:51.137][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-10-14 11:10:51.138][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:10:51.140][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2023-10-14 11:10:51.142][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.143][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2023-10-14 11:10:51.144][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.146][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-10-14 11:10:51.147][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.148][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-10-14 11:10:51.150][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-10-14 11:10:51.151][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-10-14 11:10:51.152][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-10-14 11:10:51.153][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-10-14 11:10:51.155][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-10-14 11:10:51.156][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2023-10-14 11:10:51.157][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-10-14 11:10:51.159][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:10:51.160][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.161][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:10:51.163][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-10-14 11:10:51.164][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:10:51.165][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:10:51.166][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-10-14 11:10:51.167][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:10:51.169][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:10:51.170][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-10-14 11:10:51.171][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:10:51.173][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-10-14 11:10:51.174][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-10-14 11:10:51.175][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-10-14 11:10:51.176][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:10:51.178][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2023-10-14 11:10:51.180][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.181][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2023-10-14 11:10:51.182][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.184][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-10-14 11:10:51.185][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.187][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-10-14 11:10:51.188][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-10-14 11:10:51.189][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-10-14 11:10:51.190][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-10-14 11:10:51.192][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-10-14 11:10:51.193][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-10-14 11:10:51.194][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2023-10-14 11:10:51.196][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-10-14 11:10:51.197][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:10:51.198][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.199][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:10:51.201][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-10-14 11:10:51.202][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:10:51.203][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:10:51.204][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-10-14 11:10:51.206][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:10:51.207][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:10:51.208][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-10-14 11:10:51.209][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:10:51.211][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-10-14 11:10:51.212][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-10-14 11:10:51.213][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-10-14 11:10:51.214][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:10:51.216][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-10-14 11:10:51.217][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.220][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:51.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:51.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.226][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:51.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:51.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.232][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:51.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:51.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.238][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:51.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:51.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.255][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:51.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:51.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.264][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:51.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:51.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.270][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:51.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:51.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.278][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:51.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:51.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.285][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:51.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:51.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.291][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:51.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:51.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.298][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:51.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:51.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.306][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:51.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:51.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.317][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:51.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:51.321][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.323][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:51.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:51.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.329][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:51.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:51.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.335][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:51.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:51.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.341][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:51.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:51.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.347][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2023-10-14 11:10:51.349][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2023-10-14 11:10:51.352][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2023-10-14 11:10:51.355][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2023-10-14 11:10:51.357][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-10-14 11:10:51.359][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2023-10-14 11:10:51.362][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2023-10-14 11:10:51.364][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2023-10-14 11:10:51.365][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2023-10-14 11:10:51.367][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2023-10-14 11:10:51.369][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-10-14 11:10:51.371][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2023-10-14 11:10:51.373][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2023-10-14 11:10:51.374][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2023-10-14 11:10:51.376][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-10-14 11:10:51.378][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-10-14 11:10:51.379][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2023-10-14 11:10:51.381][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2023-10-14 11:10:51.383][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-10-14 11:10:51.385][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2023-10-14 11:10:51.386][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2023-10-14 11:10:51.388][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2023-10-14 11:10:51.390][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2023-10-14 11:10:51.391][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2023-10-14 11:10:51.393][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2023-10-14 11:10:51.395][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2023-10-14 11:10:51.397][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2023-10-14 11:10:51.398][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2023-10-14 11:10:51.400][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2023-10-14 11:10:51.402][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2023-10-14 11:10:51.404][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2023-10-14 11:10:51.406][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2023-10-14 11:10:51.408][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2023-10-14 11:10:51.409][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2023-10-14 11:10:51.411][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2023-10-14 11:10:51.413][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2023-10-14 11:10:51.415][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2023-10-14 11:10:51.417][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2023-10-14 11:10:51.418][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2023-10-14 11:10:51.420][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2023-10-14 11:10:51.422][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2023-10-14 11:10:51.423][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2023-10-14 11:10:51.425][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2023-10-14 11:10:51.427][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2023-10-14 11:10:51.428][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2023-10-14 11:10:51.430][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-10-14 11:10:51.432][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2023-10-14 11:10:51.434][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2023-10-14 11:10:51.435][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2023-10-14 11:10:51.437][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2023-10-14 11:10:51.439][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2023-10-14 11:10:51.440][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2023-10-14 11:10:51.442][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2023-10-14 11:10:51.444][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2023-10-14 11:10:51.446][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2023-10-14 11:10:51.448][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2023-10-14 11:10:51.449][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2023-10-14 11:10:51.451][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2023-10-14 11:10:51.453][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2023-10-14 11:10:51.454][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2023-10-14 11:10:51.456][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2023-10-14 11:10:51.458][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2023-10-14 11:10:51.459][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2023-10-14 11:10:51.461][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2023-10-14 11:10:51.463][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2023-10-14 11:10:51.466][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2023-10-14 11:10:51.467][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-10-14 11:10:51.469][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-10-14 11:10:51.471][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2023-10-14 11:10:51.473][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2023-10-14 11:10:51.474][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2023-10-14 11:10:51.476][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2023-10-14 11:10:51.480][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2023-10-14 11:10:51.483][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2023-10-14 11:10:51.486][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2023-10-14 11:10:51.488][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2023-10-14 11:10:51.490][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2023-10-14 11:10:51.492][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2023-10-14 11:10:51.496][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2023-10-14 11:10:51.499][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2023-10-14 11:10:51.501][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2023-10-14 11:10:51.503][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2023-10-14 11:10:51.505][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2023-10-14 11:10:51.507][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2023-10-14 11:10:51.509][initialize] This is biodb version 1.8.1.
biodb.DEBUG[2023-10-14 11:10:51.511][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-10-14 11:10:51.513][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:51.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:51.517][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.521][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:51.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:51.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:51.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:51.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.529][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:51.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:51.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:51.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:51.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.538][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:51.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:51.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:51.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:51.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.546][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:51.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:51.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:51.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:51.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.555][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:51.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:51.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:51.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:51.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.564][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:51.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:51.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:51.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:51.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.572][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:51.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:51.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:51.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:51.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.584][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:51.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:51.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:51.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:51.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.592][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:51.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:51.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:51.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:51.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.600][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:51.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:51.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:51.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:51.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.610][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:51.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:51.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:51.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:51.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.618][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:51.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:51.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:51.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:51.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.626][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:51.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:51.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:51.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:51.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.638][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:51.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:51.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:51.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:51.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.647][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:51.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:51.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:51.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:51.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.655][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:51.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:51.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:51.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:51.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.663][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:10:51.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:51.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:51.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:51.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:51.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:10:51.673][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.17-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2023-10-14 11:10:51.676][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2023-10-14 11:10:51.687][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.689][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2023-10-14 11:10:51.691][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.692][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-10-14 11:10:51.694][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.695][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-10-14 11:10:51.696][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.698][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-10-14 11:10:51.699][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2023-10-14 11:10:51.700][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-10-14 11:10:51.702][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.703][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2023-10-14 11:10:51.704][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-10-14 11:10:51.706][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2023-10-14 11:10:51.706][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2023-10-14 11:10:51.707][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-10-14 11:10:51.708][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:10:51.710][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-10-14 11:10:51.711][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:10:51.713][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:10:51.714][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-10-14 11:10:51.715][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:10:51.716][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:10:51.718][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-10-14 11:10:51.719][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2023-10-14 11:10:51.719][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2023-10-14 11:10:51.720][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-10-14 11:10:51.721][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-10-14 11:10:51.723][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.724][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:10:51.726][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2023-10-14 11:10:51.728][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.729][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2023-10-14 11:10:51.730][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.732][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-10-14 11:10:51.733][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.734][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-10-14 11:10:51.736][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.737][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-10-14 11:10:51.738][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-10-14 11:10:51.740][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-10-14 11:10:51.741][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.742][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2023-10-14 11:10:51.743][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-10-14 11:10:51.745][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2023-10-14 11:10:51.745][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2023-10-14 11:10:51.745][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2023-10-14 11:10:51.745][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2023-10-14 11:10:51.745][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2023-10-14 11:10:51.745][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2023-10-14 11:10:51.746][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-10-14 11:10:51.747][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-10-14 11:10:51.749][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-10-14 11:10:51.750][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:10:51.751][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:10:51.752][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-10-14 11:10:51.753][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:10:51.754][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:10:51.756][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-10-14 11:10:51.757][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-10-14 11:10:51.757][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2023-10-14 11:10:51.758][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-10-14 11:10:51.760][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-10-14 11:10:51.761][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.762][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:10:51.764][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2023-10-14 11:10:51.766][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-10-14 11:10:51.768][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2023-10-14 11:10:51.769][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.770][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-10-14 11:10:51.772][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.773][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-10-14 11:10:51.774][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.776][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-10-14 11:10:51.777][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-10-14 11:10:51.778][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-10-14 11:10:51.780][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.781][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2023-10-14 11:10:51.782][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-10-14 11:10:51.783][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2023-10-14 11:10:51.783][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:10:51.783][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:10:51.783][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:10:51.783][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:10:51.783][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:10:51.783][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:10:51.783][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:10:51.783][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:10:51.783][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:10:51.783][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2023-10-14 11:10:51.783][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:10:51.783][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:10:51.783][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-10-14 11:10:51.785][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-10-14 11:10:51.786][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-10-14 11:10:51.786][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-10-14 11:10:51.786][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-10-14 11:10:51.788][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2023-10-14 11:10:51.789][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:10:51.790][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:10:51.792][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-10-14 11:10:51.793][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:10:51.794][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:10:51.795][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-10-14 11:10:51.797][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-10-14 11:10:51.797][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2023-10-14 11:10:51.797][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2023-10-14 11:10:51.798][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-10-14 11:10:51.799][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-10-14 11:10:51.800][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.802][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2023-10-14 11:10:51.803][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2023-10-14 11:10:51.806][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.808][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2023-10-14 11:10:51.810][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.813][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-10-14 11:10:51.814][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.815][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-10-14 11:10:51.817][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.818][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-10-14 11:10:51.820][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-10-14 11:10:51.821][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-10-14 11:10:51.822][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.824][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2023-10-14 11:10:51.825][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-10-14 11:10:51.826][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2023-10-14 11:10:51.826][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2023-10-14 11:10:51.828][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-10-14 11:10:51.830][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:10:51.831][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2023-10-14 11:10:51.832][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:10:51.833][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:10:51.835][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-10-14 11:10:51.836][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:10:51.837][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:10:51.838][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-10-14 11:10:51.840][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-10-14 11:10:51.840][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2023-10-14 11:10:51.840][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2023-10-14 11:10:51.841][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-10-14 11:10:51.842][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-10-14 11:10:51.844][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-10-14 11:10:51.845][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2023-10-14 11:10:51.846][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2023-10-14 11:10:51.848][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-10-14 11:10:51.850][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-10-14 11:10:51.852][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2023-10-14 11:10:51.854][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-10-14 11:10:51.856][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2023-10-14 11:10:51.862][super$initialize] Initialize connector ncbi.pubchem.subst.
biodb.DEBUG[2023-10-14 11:10:51.863][super$initialize] Register connector ncbi.pubchem.subst with the request scheduler
biodb.DEBUG[2023-10-14 11:10:51.866][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.subst.
biodb.DEBUG[2023-10-14 11:10:51.869][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2023-10-14 11:10:51.871][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2023-10-14 11:10:51.872][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2023-10-14 11:10:51.874][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2023-10-14 11:10:51.876][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2023-10-14 11:10:51.877][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2023-10-14 11:10:51.879][rule$addConnector] Connector "ncbi.pubchem.subst" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2023-10-14 11:10:51.900][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.subst for database class ncbi.pubchem.subst .
biodb.INFO [2023-10-14 11:10:51.910][biodb::testThat]
biodb.INFO [2023-10-14 11:10:51.912][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2023-10-14 11:10:51.914][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:10:51.915][biodb::testThat]
biodb.TRACE[2023-10-14 11:10:51.919][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.17-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.subst-3-content.xml".
biodb.DEBUG[2023-10-14 11:10:51.921][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:10:51.926][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2023-10-14 11:10:51.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:51.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:51.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:51.939][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:51.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:51.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:51.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:51.946][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:51.948][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:51.949][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:51.950][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:51.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:51.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:51.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:51.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:51.957][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:51.959][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:51.960][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:51.961][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:51.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:51.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:51.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:51.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:51.968][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-10-14 11:10:51.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-10-14 11:10:51.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:51.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:51.973][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-10-14 11:10:51.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-10-14 11:10:51.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:51.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:51.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:51.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:51.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:51.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:51.984][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-10-14 11:10:51.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-10-14 11:10:51.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:51.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:51.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:51.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:51.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:51.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:51.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:51.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:51.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:51.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:52.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:52.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:52.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:52.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:52.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:52.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:52.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:52.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:52.024][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3.
biodb.TRACE[2023-10-14 11:10:52.027][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:10:52.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:10:52.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.032][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:10:52.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:10:52.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.037][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:10:52.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:10:52.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.042][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:10:52.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:10:52.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.048][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:10:52.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:10:52.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.055][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-10-14 11:10:52.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-10-14 11:10:52.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.062][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-10-14 11:10:52.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-10-14 11:10:52.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:52.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:52.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.081][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-10-14 11:10:52.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-10-14 11:10:52.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:52.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:52.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:52.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:52.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:52.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:52.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:52.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:52.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:52.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:52.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:52.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:52.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.140][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-10-14 11:10:52.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-10-14 11:10:52.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.145][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-10-14 11:10:52.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-10-14 11:10:52.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.151][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-10-14 11:10:52.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-10-14 11:10:52.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:52.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:52.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:52.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:52.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:52.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:52.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.184][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:52.185][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:52.186][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.188][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:52.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:52.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.207][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:52.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:52.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.214][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:52.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:52.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.219][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:52.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:52.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.224][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:52.226][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:52.227][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.228][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.229][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:52.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:52.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.246][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:52.248][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:52.250][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.253][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.262][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:52.263][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:52.265][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.266][ef$get] fields variable is a list.
biodb.INFO [2023-10-14 11:10:52.280][biodb::testThat]
biodb.INFO [2023-10-14 11:10:52.282][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2023-10-14 11:10:52.283][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:10:52.284][biodb::testThat]
biodb.DEBUG[2023-10-14 11:10:52.288][private$loadEntries] Creating entries from ids [1]: "3".
biodb.DEBUG[2023-10-14 11:10:52.290][conn$getEntryContent] Get PubChem Substance entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:10:52.294][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3".
biodb.TRACE[2023-10-14 11:10:52.296][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:10:52.308][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.subst-e80afa72f6aa7425ca0c72f99f7b9d75/3.xml".
biodb.DEBUG[2023-10-14 11:10:52.309][conn$getEntryContent] 1 PubChem Substance entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:10:52.311][self$createEntryFromContent] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:10:52.313][self$createEntryFromContent] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2023-10-14 11:10:52.315][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:10:52.316][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:52.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:52.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:52.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:52.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:52.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:10:52.333][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:52.334][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:52.336][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.337][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:52.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:52.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.344][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:52.345][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:52.346][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.348][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.350][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:52.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-10-14 11:10:52.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.355][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-10-14 11:10:52.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-10-14 11:10:52.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.360][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-10-14 11:10:52.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-10-14 11:10:52.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:52.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:52.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.370][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-10-14 11:10:52.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-10-14 11:10:52.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:52.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:52.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:52.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:52.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:52.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:52.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:52.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:52.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:52.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:52.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:10:52.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:10:52.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:10:52.408][self$createEntryFromContent] Accession numbers: 3.
biodb.TRACE[2023-10-14 11:10:52.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-10-14 11:10:52.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-10-14 11:10:52.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-10-14 11:10:52.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-10-14 11:10:52.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-10-14 11:10:52.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-10-14 11:10:52.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-10-14 11:10:52.438][biodb::testThat]
biodb.INFO [2023-10-14 11:10:52.439][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2023-10-14 11:10:52.441][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:10:52.442][biodb::testThat]
biodb.INFO [2023-10-14 11:10:52.453][biodb::testThat]
biodb.INFO [2023-10-14 11:10:52.454][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2023-10-14 11:10:52.455][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:10:52.457][biodb::testThat]
biodb.WARN [2023-10-14 11:10:52.464][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2023-10-14 11:10:52.471][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2023-10-14 11:10:52.489][biodb::testThat]
biodb.INFO [2023-10-14 11:10:52.491][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2023-10-14 11:10:52.493][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:10:52.494][biodb::testThat]
biodb.TRACE[2023-10-14 11:10:52.512][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:10:52.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:10:52.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.517][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:10:52.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:10:52.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.524][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:10:52.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:10:52.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.530][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:10:52.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:10:52.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.535][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:10:52.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:10:52.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.541][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-10-14 11:10:52.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-10-14 11:10:52.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.546][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-10-14 11:10:52.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-10-14 11:10:52.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.562][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:10:52.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:10:52.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.568][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-10-14 11:10:52.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-10-14 11:10:52.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.573][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:10:52.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-10-14 11:10:52.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.578][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:10:52.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:10:52.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.583][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:10:52.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:10:52.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.589][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-10-14 11:10:52.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-10-14 11:10:52.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:10:52.594][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-10-14 11:10:52.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-10-14 11:10:52.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:10:52.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-10-14 11:10:52.608][biodb::testThat]
biodb.INFO [2023-10-14 11:10:52.610][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2023-10-14 11:10:52.611][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:10:52.612][biodb::testThat]
biodb.INFO [2023-10-14 11:10:52.625][biodb::testThat]
biodb.INFO [2023-10-14 11:10:52.626][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2023-10-14 11:10:52.628][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:10:52.629][biodb::testThat]
biodb.INFO [2023-10-14 11:10:52.643][biodb::testThat]
biodb.INFO [2023-10-14 11:10:52.644][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2023-10-14 11:10:52.646][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:10:52.647][biodb::testThat]
biodb.DEBUG[2023-10-14 11:10:52.653][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/substance/3".
biodb.DEBUG[2023-10-14 11:10:52.719][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/substance/3.
biodb.INFO [2023-10-14 11:10:52.828][biodb::testThat]
biodb.INFO [2023-10-14 11:10:52.830][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2023-10-14 11:10:52.831][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:10:52.832][biodb::testThat]
biodb.DEBUG[2023-10-14 11:10:52.910][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=3&t=l.
biodb.INFO [2023-10-14 11:10:52.971][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2023-10-14 11:10:52.972][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.subst from the request scheduler
biodb.INFO [2023-10-14 11:10:52.974][self$deleteConn] Connector "ncbi.pubchem.subst" deleted.
biodb.DEBUG[2023-10-14 11:10:52.975][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2023-10-14 11:10:52.976][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:10:52.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:10:52.979][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:10:52.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:10:52.981][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:10:52.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1030 ]

[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1030 ]
> 
> proc.time()
   user  system elapsed 
  64.57    2.70  101.32

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.4.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.17-bioc-longtests/meat/biodbNcbi.Rcheck'
* using R version 4.3.1 (2023-06-16 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
    gcc.exe (GCC) 12.2.0
    GNU Fortran (GCC) 12.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using options '--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error'
* checking for file 'biodbNcbi/DESCRIPTION' ... OK
* this is package 'biodbNcbi' version '1.4.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbNcbi' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.1Mb
  sub-directories of 1Mb or more:
    testref   7.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in 'longtests' ... WARNING
'library' or 'require' call not declared from: 'biodbNci'
* checking tests in 'longtests' ...
  Running 'testthat.R'
 OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  'F:/biocbuild/bbs-3.17-bioc-longtests/meat/biodbNcbi.Rcheck/00check.log'
for details.

Installation output

biodbNcbi.Rcheck/00install.out

* installing *source* package 'biodbNcbi' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbNcbi)